Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11945 Nelumbo nucifera HOM05D000334 ORTHO05D000200 2.2e-44 181.8 85 100.0
Nn8g40905 Nelumbo nucifera HOM05D000334 ORTHO05D000200 4.3e-32 141.0 82 85.4
Nn1g02517 Nelumbo nucifera HOM05D000334 ORTHO05D000200 4.2e-19 97.8 66 74.2
Nn3g19473 Nelumbo nucifera HOM05D000334 ORTHO05D000200 1.3e-15 86.3 66 63.6
TAR633G1506 Trochodendron aralioides HOM05D000334 ORTHO05D000200 3.4e-13 78.2 51 68.6
Dinv44602 Davidia involucrata HOM05D000334 ORTHO05D000200 1.0e-12 76.6 63 65.1
TAR362G0195 Trochodendron aralioides HOM05D000334 ORTHO05D000200 1.0e-12 76.6 66 54.5
MELO3C006486.2 Cucumis melo HOM05D000334 ORTHO05D000200 1.7e-12 75.9 76 52.6
CsaV3_3G012760 Cucumis sativus L. HOM05D000334 ORTHO05D000200 3.8e-12 74.7 76 51.3
ClCG05G004740 Citrullus lanatus HOM05D000334 ORTHO05D000200 6.5e-12 73.9 76 51.3
Peaxi162Scf00788g00110 Petunia axillaris HOM05D000334 ORTHO05D000200 6.5e-12 73.9 79 49.4
TAR262G0001 Trochodendron aralioides HOM05D000334 ORTHO05D000200 8.5e-12 73.6 51 70.6
TAR365G0993 Trochodendron aralioides HOM05D000334 ORTHO05D000200 8.5e-12 73.6 51 70.6
MBI04_g27057_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 1.9e-11 72.4 66 56.1
Dinv14068 Davidia involucrata HOM05D000334 ORTHO05D000200 2.5e-11 72.0 51 72.5
Hma1.2p1_0897F.1_g234250 Hydrangea macrophylla HOM05D000334 ORTHO05D000200 3.2e-11 71.6 56 66.1
Aqoxy2G03496 Aquilegia oxysepala HOM05D000334 ORTHO05D000200 4.2e-11 71.2 42 78.6
TAR636G1310 Trochodendron aralioides HOM05D000334 ORTHO05D000200 4.2e-11 71.2 66 59.1
Actinidia08454 Actinidia chinensis HOM05D000334 ORTHO05D000200 5.5e-11 70.9 51 72.5
PGR004G2560 Punica granatum HOM05D000334 ORTHO05D000200 5.5e-11 70.9 54 66.7
Actinidia40103 Actinidia chinensis HOM05D000334 ORTHO05D000200 7.2e-11 70.5 51 68.6
Prupe.8G233100 Prunus persica HOM05D000334 ORTHO05D000200 9.4e-11 70.1 66 50.0
Sed0007793 Sechium edule HOM05D000334 ORTHO05D000200 9.4e-11 70.1 66 53.0
vmacro15395 Vaccinium macrocarpon HOM05D000334 ORTHO05D000200 9.4e-11 70.1 51 70.6
CSS0010805 Camellia sinensis var. sinensis HOM05D000334 ORTHO05D000200 1.2e-10 69.7 51 68.6
Ciclev10005172m.g Citrus clementina HOM05D000334 ORTHO05D000200 1.2e-10 69.7 51 70.6
Rhsim02G0031800 Rhododendron simsii HOM05D000334 ORTHO05D000200 1.2e-10 69.7 54 68.5
GSVIVG01003141001 Vitis vinifera HOM05D000334 ORTHO05D000200 1.6e-10 69.3 78 48.7
Atru.chr5.1550 Acer truncatum HOM05D000334 ORTHO05D000200 2.1e-10 68.9 58 62.1
Lj3C720T18 Lonicera japonica HOM05D000334 ORTHO05D000200 2.1e-10 68.9 66 56.1
Rhsim04G0195800 Rhododendron simsii HOM05D000334 ORTHO05D000200 2.1e-10 68.9 51 68.6
RhsimUnG0084800 Rhododendron simsii HOM05D000334 ORTHO05D000200 2.1e-10 68.9 51 68.6
Actinidia05474 Actinidia chinensis HOM05D000334 ORTHO05D000200 4.6e-10 67.8 59 64.4
CAN.G749.14 Capsicum annuum HOM05D000334 ORTHO05D000200 6.1e-10 67.4 63 58.7
DCAR_027260 Daucus carota HOM05D000334 ORTHO05D000200 6.1e-10 67.4 67 56.7
Potri.005G216900 Populus trichocarpa HOM05D000334 ORTHO05D000200 6.1e-10 67.4 54 61.1
Manes.01G202700 Manihot esculenta HOM05D000334 ORTHO05D000200 7.9e-10 67.0 60 56.7
MD11G1276600 Malus domestica HOM05D000334 ORTHO05D000200 1.0e-09 66.6 55 58.2
SalBow2G2953 Salvia bowleyana HOM05D000334 ORTHO05D000200 1.0e-09 66.6 60 60.0
CSS0033897 Camellia sinensis var. sinensis HOM05D000334 ORTHO05D000200 1.4e-09 66.2 51 68.6
CSS0041713 Camellia sinensis var. sinensis HOM05D000334 ORTHO05D000200 1.4e-09 66.2 51 68.6
Duzib211G0605 Durio zibethinus HOM05D000334 ORTHO05D000200 1.4e-09 66.2 67 55.2
Potri.002G046300 Populus trichocarpa HOM05D000334 ORTHO05D000200 1.4e-09 66.2 54 59.3
Sabra05G0166400 Salix brachista HOM05D000334 ORTHO05D000200 1.4e-09 66.2 54 59.3
CiPaw.03G256300 Carya illinoinensis HOM05D000334 ORTHO05D000200 1.8e-09 65.9 50 64.0
Nitab4.5_0005057g0020 Nicotiana tabacum HOM05D000334 ORTHO05D000200 1.8e-09 65.9 54 66.7
Nitab4.5_0001497g0140 Nicotiana tabacum HOM05D000334 ORTHO05D000200 2.3e-09 65.5 66 59.1
Lj6A651T64 Lonicera japonica HOM05D000334 ORTHO05D000200 3.0e-09 65.1 52 69.2
Eucgr.H03395 Eucalyptus grandis HOM05D000334 ORTHO05D000200 3.9e-09 64.7 51 66.7
Sabra02G0037200 Salix brachista HOM05D000334 ORTHO05D000200 3.9e-09 64.7 54 59.3
Lalb_Chr21g0311931 Lupinus albus HOM05D000334 ORTHO05D000200 5.1e-09 64.3 62 59.7
Sed0003192 Sechium edule HOM05D000334 ORTHO05D000200 5.1e-09 64.3 66 51.5
Solyc09g082980.3 Solanum lycopersicum HOM05D000334 ORTHO05D000200 5.1e-09 64.3 58 67.2
Sopen09g031850 Solanum pennellii HOM05D000334 ORTHO05D000200 5.1e-09 64.3 58 67.2
Dinv22489 Davidia involucrata HOM05D000334 ORTHO05D000200 6.7e-09 63.9 66 47.0
Gohir.A08G062400 Gossypium hirsutum HOM05D000334 ORTHO05D000200 8.8e-09 63.5 55 60.0
Gohir.D08G071600 Gossypium hirsutum HOM05D000334 ORTHO05D000200 8.8e-09 63.5 55 60.0
Gorai.004G075500 Gossypium raimondii HOM05D000334 ORTHO05D000200 8.8e-09 63.5 55 60.0
Haze_24519 Corylus avellana HOM05D000334 ORTHO05D000200 1.1e-08 63.2 55 56.4
MELO3C014315.2 Cucumis melo HOM05D000334 ORTHO05D000200 1.1e-08 63.2 58 51.7
DCAR_030701 Daucus carota HOM05D000334 ORTHO05D000200 1.1e-08 63.2 43 72.1
Lalb_Chr02g0149981 Lupinus albus HOM05D000334 ORTHO05D000200 1.1e-08 63.2 71 47.9
Nn1g07295 Nelumbo nucifera HOM05D000334 ORTHO05D000200 1.1e-08 63.2 39 74.4
PGR142G1081 Punica granatum HOM05D000334 ORTHO05D000200 1.1e-08 63.2 43 74.4
RcHm_v2.0_Chr6g0289671 Rosa chinensis HOM05D000334 ORTHO05D000200 1.1e-08 63.2 66 53.0
SalBow3G3096 Salvia bowleyana HOM05D000334 ORTHO05D000200 1.1e-08 63.2 68 51.5
Aqoxy5G00375 Aquilegia oxysepala HOM05D000334 ORTHO05D000200 1.5e-08 62.8 61 54.1
Nitab4.5_0000941g0090 Nicotiana tabacum HOM05D000334 ORTHO05D000200 1.5e-08 62.8 77 49.4
ClCG07G000570 Citrullus lanatus HOM05D000334 ORTHO05D000200 1.9e-08 62.4 54 51.9
Sed0001408 Sechium edule HOM05D000334 ORTHO05D000200 1.9e-08 62.4 54 53.7
PGSC0003DMG400006081 Solanum tuberosum HOM05D000334 ORTHO05D000200 1.9e-08 62.4 43 76.7
Actinidia19975 Actinidia chinensis HOM05D000334 ORTHO05D000200 2.5e-08 62.0 53 54.7
MBI11_g28616_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 2.5e-08 62.0 67 44.8
Nitab4.5_0002446g0130 Nicotiana tabacum HOM05D000334 ORTHO05D000200 2.5e-08 62.0 51 68.6
Ciclev10020512m.g Citrus clementina HOM05D000334 ORTHO05D000200 3.3e-08 61.6 55 58.2
vmacro08392 Vaccinium macrocarpon HOM05D000334 ORTHO05D000200 3.3e-08 61.6 52 61.5
VMungo0720G1211 Vigna mungo HOM05D000334 ORTHO05D000200 3.3e-08 61.6 60 58.3
GSVIVG01018080001 Vitis vinifera HOM05D000334 ORTHO05D000200 3.3e-08 61.6 50 64.0
Oeu009112.1 Olea europaea HOM05D000334 ORTHO05D000200 4.3e-08 61.2 48 64.6
CsaV3_2G013750 Cucumis sativus L. HOM05D000334 ORTHO05D000200 5.7e-08 60.8 58 50.0
Duzib133G0145 Durio zibethinus HOM05D000334 ORTHO05D000200 5.7e-08 60.8 55 58.2
Duzib138G0775 Durio zibethinus HOM05D000334 ORTHO05D000200 5.7e-08 60.8 60 55.0
Duzib212G0279 Durio zibethinus HOM05D000334 ORTHO05D000200 5.7e-08 60.8 71 52.1
Glyma.10G179100 Glycine max HOM05D000334 ORTHO05D000200 5.7e-08 60.8 56 57.1
Manes.05G083100 Manihot esculenta HOM05D000334 ORTHO05D000200 5.7e-08 60.8 48 66.7
SalBow4G1330 Salvia bowleyana HOM05D000334 ORTHO05D000200 5.7e-08 60.8 70 50.0
Sp3g20660 Schrenkiella parvula HOM05D000334 ORTHO05D000200 5.7e-08 60.8 62 54.8
unitig_32.g11720 Utricularia gibba HOM05D000334 ORTHO05D000200 5.7e-08 60.8 60 55.0
Atru.chr4.2314 Acer truncatum HOM05D000334 ORTHO05D000200 7.4e-08 60.5 51 62.7
SGA_v2.0_scaffold101G29751 Striga asiatica HOM05D000334 ORTHO05D000200 7.4e-08 60.5 43 69.8
Oeu025780.1 Olea europaea HOM05D000334 ORTHO05D000200 9.7e-08 60.1 54 53.7
Psat6g058080 Pisum sativum HOM05D000334 ORTHO05D000200 9.7e-08 60.1 43 65.1
MSTRG.9941 Avicennia marina HOM05D000334 ORTHO05D000200 1.3e-07 59.7 61 52.5
BcaC01g03404 Brassica carinata HOM05D000334 ORTHO05D000200 1.3e-07 59.7 53 64.2
BcaC05g27998 Brassica carinata HOM05D000334 ORTHO05D000200 1.3e-07 59.7 63 55.6
C03p52920 Brassica napus HOM05D000334 ORTHO05D000200 1.3e-07 59.7 53 64.2
C05p40070 Brassica napus HOM05D000334 ORTHO05D000200 1.3e-07 59.7 63 55.6
BolC3t17556H Brassica oleracea HOM05D000334 ORTHO05D000200 1.3e-07 59.7 53 64.2
BolC5t32752H Brassica oleracea HOM05D000334 ORTHO05D000200 1.3e-07 59.7 63 55.6
Glyma.20G211100 Glycine max HOM05D000334 ORTHO05D000200 1.3e-07 59.7 45 64.4
Phvul.007G110800 Phaseolus vulgaris HOM05D000334 ORTHO05D000200 1.3e-07 59.7 51 62.7
HPP92_019483 Vanilla planifolia HOM05D000334 ORTHO05D000200 1.3e-07 59.7 46 63.0
MSTRG.21515 Avicennia marina HOM05D000334 ORTHO05D000200 1.7e-07 59.3 73 42.5
A03p43100 Brassica napus HOM05D000334 ORTHO05D000200 1.7e-07 59.3 53 64.2
BraA03t13452Z Brassica rapa HOM05D000334 ORTHO05D000200 1.7e-07 59.3 53 64.2
Ca_09718_v3 Cicer arietinum L. HOM05D000334 ORTHO05D000200 1.7e-07 59.3 61 47.5
COL.COLO4_06094 Corchorus olitorius HOM05D000334 ORTHO05D000200 1.7e-07 59.3 55 60.0
Gohir.A07G208200 Gossypium hirsutum HOM05D000334 ORTHO05D000200 1.7e-07 59.3 55 58.2
MD16G1204400 Malus domestica HOM05D000334 ORTHO05D000200 1.7e-07 59.3 59 54.2
RcHm_v2.0_Chr4g0388891 Rosa chinensis HOM05D000334 ORTHO05D000200 1.7e-07 59.3 44 68.2
Gohir.D07G214200 Gossypium hirsutum HOM05D000334 ORTHO05D000200 2.8e-07 58.5 55 58.2
Gorai.001G242200 Gossypium raimondii HOM05D000334 ORTHO05D000200 2.8e-07 58.5 55 58.2
MD13G1202800 Malus domestica HOM05D000334 ORTHO05D000200 2.8e-07 58.5 59 54.2
Prupe.1G024900 Prunus persica HOM05D000334 ORTHO05D000200 2.8e-07 58.5 69 49.3
Sc13g0004880 Simmondsia chinensis HOM05D000334 ORTHO05D000200 2.8e-07 58.5 48 62.5
AT3G22970 Arabidopsis thaliana HOM05D000334 ORTHO05D000200 3.7e-07 58.2 56 57.1
MSTRG.24714 Avicennia marina HOM05D000334 ORTHO05D000200 3.7e-07 58.2 43 62.8
BcaB06g26418 Brassica carinata HOM05D000334 ORTHO05D000200 3.7e-07 58.2 63 55.6
Carub.0003s2313 Capsella rubella HOM05D000334 ORTHO05D000200 3.7e-07 58.2 55 58.2
Cfa002313 Carpinus fangiana HOM05D000334 ORTHO05D000200 3.7e-07 58.2 57 52.6
Gohir.A08G187800 Gossypium hirsutum HOM05D000334 ORTHO05D000200 3.7e-07 58.2 55 56.4
MD02G1260100 Malus domestica HOM05D000334 ORTHO05D000200 3.7e-07 58.2 59 54.2
THA.LOC104810650 Tarenaya hassleriana HOM05D000334 ORTHO05D000200 3.7e-07 58.2 44 68.2
THA.LOC104822802 Tarenaya hassleriana HOM05D000334 ORTHO05D000200 3.7e-07 58.2 44 68.2
TWI12G0483 Tripterygium wilfordii HOM05D000334 ORTHO05D000200 3.7e-07 58.2 57 52.6
MSTRG.4078 Avicennia marina HOM05D000334 ORTHO05D000200 4.8e-07 57.8 56 60.7
CANSAT25G1951 Cannabis sativa HOM05D000334 ORTHO05D000200 4.8e-07 57.8 68 45.6
Gohir.D08G206100 Gossypium hirsutum HOM05D000334 ORTHO05D000200 4.8e-07 57.8 61 50.8
Gorai.004G218200 Gossypium raimondii HOM05D000334 ORTHO05D000200 4.8e-07 57.8 61 50.8
unitig_748.g7309 Utricularia gibba HOM05D000334 ORTHO05D000200 4.8e-07 57.8 58 53.4
Aa31LG8G9470 Aethionema arabicum HOM05D000334 ORTHO05D000200 6.3e-07 57.4 44 70.5
Ah.02g111360 Amaranthus hybridus HOM05D000334 ORTHO05D000200 6.3e-07 57.4 47 63.8
CANSAT78G0714 Cannabis sativa HOM05D000334 ORTHO05D000200 8.2e-07 57.0 66 50.0
Lalb_Chr06g0162711 Lupinus albus HOM05D000334 ORTHO05D000200 8.2e-07 57.0 57 52.6
CARHR098910 Cardamine hirsuta HOM05D000334 ORTHO05D000200 1.1e-06 56.6 55 56.4
Psat6g113840 Pisum sativum HOM05D000334 ORTHO05D000200 1.1e-06 56.6 54 53.7
TWI18G0735 Tripterygium wilfordii HOM05D000334 ORTHO05D000200 1.1e-06 56.6 57 52.6
AL3G37380 Arabidopsis lyrata HOM05D000334 ORTHO05D000200 1.4e-06 56.2 56 55.4
MSTRG.17470 Avicennia marina HOM05D000334 ORTHO05D000200 1.4e-06 56.2 47 57.4
Ca_09884_v3 Cicer arietinum L. HOM05D000334 ORTHO05D000200 1.4e-06 56.2 54 55.6
Hma1.2p1_0172F.1_g076120 Hydrangea macrophylla HOM05D000334 ORTHO05D000200 1.4e-06 56.2 51 52.9
Medtr1g076500 Medicago truncatula HOM05D000334 ORTHO05D000200 1.4e-06 56.2 44 61.4
FAN20G2804 Fragaria x ananassa HOM05D000334 ORTHO05D000200 1.8e-06 55.8 66 45.5
MD03G1256000 Malus domestica HOM05D000334 ORTHO05D000200 1.8e-06 55.8 55 54.5
TWI09G1098 Tripterygium wilfordii HOM05D000334 ORTHO05D000200 1.8e-06 55.8 66 51.5
MD07G1143500 Malus domestica HOM05D000334 ORTHO05D000200 2.4e-06 55.5 56 53.6
Peaxi162Scf00131g00064 Petunia axillaris HOM05D000334 ORTHO05D000200 2.4e-06 55.5 66 47.0
BcaB03g14638 Brassica carinata HOM05D000334 ORTHO05D000200 3.1e-06 55.1 55 54.5
CAN.G231.23 Capsicum annuum HOM05D000334 ORTHO05D000200 3.1e-06 55.1 53 56.6
CiPaw.01G193300 Carya illinoinensis HOM05D000334 ORTHO05D000200 3.1e-06 55.1 59 59.3
Lalb_Chr19g0127841 Lupinus albus HOM05D000334 ORTHO05D000200 3.1e-06 55.1 46 60.9
Oeu032625.1 Olea europaea HOM05D000334 ORTHO05D000200 3.1e-06 55.1 44 65.9
SHI10032 Sapria himalayana HOM05D000334 ORTHO05D000200 3.1e-06 55.1 50 52.0
Sc05g0001090 Simmondsia chinensis HOM05D000334 ORTHO05D000200 3.1e-06 55.1 42 69.0
TWI73G0502 Tripterygium wilfordii HOM05D000334 ORTHO05D000200 3.1e-06 55.1 43 65.1
FAN17G0756 Fragaria x ananassa HOM05D000334 ORTHO05D000200 4.1e-06 54.7 43 65.1
FAN22G0166 Fragaria x ananassa HOM05D000334 ORTHO05D000200 4.1e-06 54.7 43 65.1
Cpa.g.sc58.1 Carica papaya HOM05D000334 ORTHO05D000200 5.3e-06 54.3 48 60.4
AUR62011955 Chenopodium quinoa HOM05D000334 ORTHO05D000200 5.3e-06 54.3 45 64.4
AUR62032268 Chenopodium quinoa HOM05D000334 ORTHO05D000200 5.3e-06 54.3 45 64.4
FvH4_4g01830 Fragaria vesca HOM05D000334 ORTHO05D000200 5.3e-06 54.3 43 65.1
FAN12G0926 Fragaria x ananassa HOM05D000334 ORTHO05D000200 5.3e-06 54.3 43 65.1
QL06p000443 Quercus lobata HOM05D000334 ORTHO05D000200 5.3e-06 54.3 57 54.4
QL12p042548 Quercus lobata HOM05D000334 ORTHO05D000200 5.3e-06 54.3 63 52.4
Hund09562 Selenicereus undatus HOM05D000334 ORTHO05D000200 5.3e-06 54.3 44 65.9
Ah.11g050070 Amaranthus hybridus HOM05D000334 ORTHO05D000200 6.9e-06 53.9 55 50.9
MSTRG.18278 Avicennia marina HOM05D000334 ORTHO05D000200 6.9e-06 53.9 43 58.1
EL10Ac5g10478 Beta vulgaris HOM05D000334 ORTHO05D000200 6.9e-06 53.9 49 61.2
BcaC09g50133 Brassica carinata HOM05D000334 ORTHO05D000200 6.9e-06 53.9 51 56.9
C01p28670 Brassica napus HOM05D000334 ORTHO05D000200 6.9e-06 53.9 51 56.9
BolC1t02794H Brassica oleracea HOM05D000334 ORTHO05D000200 6.9e-06 53.9 51 56.9
BraA05t21455Z Brassica rapa HOM05D000334 ORTHO05D000200 6.9e-06 53.9 63 52.4
Oeu011515.1 Olea europaea HOM05D000334 ORTHO05D000200 6.9e-06 53.9 54 51.9
PGSC0003DMG400016273 Solanum tuberosum HOM05D000334 ORTHO05D000200 6.9e-06 53.9 53 60.4
arahy.Tifrunner.gnm1.ann1.CAKS1J Arachis hypogaea HOM05D000334 ORTHO05D000200 9.1e-06 53.5 48 64.6
Cfa008409 Carpinus fangiana HOM05D000334 ORTHO05D000200 9.1e-06 53.5 61 52.5
CiPaw.02G118400 Carya illinoinensis HOM05D000334 ORTHO05D000200 9.1e-06 53.5 59 59.3
Haze_11257 Corylus avellana HOM05D000334 ORTHO05D000200 9.1e-06 53.5 61 52.5
FAN15G3141 Fragaria x ananassa HOM05D000334 ORTHO05D000200 9.1e-06 53.5 66 43.9
Solyc06g053910.4 Solanum lycopersicum HOM05D000334 ORTHO05D000200 9.1e-06 53.5 53 60.4
Sopen06g019070 Solanum pennellii HOM05D000334 ORTHO05D000200 9.1e-06 53.5 53 60.4


User provided reference genes

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