Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11886 Nelumbo nucifera HOM05D008081 ORTHO05D010223 4.0e-229 797.7 396 100.0
Aqoxy7G01970 Aquilegia oxysepala HOM05D008081 ORTHO05D010223 3.1e-149 532.3 398 67.3
MBI04_g33811_MAGBIO Magnolia biondii HOM05D008081 ORTHO05D010223 3.4e-148 528.9 395 66.1
PSO765G0202 Papaver somniferum HOM05D008081 ORTHO05D010223 8.7e-144 514.2 397 64.7
PSO349G0241 Papaver somniferum HOM05D008081 ORTHO05D010223 2.5e-143 512.7 399 64.9
TAR383G0366 Trochodendron aralioides HOM05D008081 ORTHO05D010223 2.9e-139 499.2 396 65.2
DCAR_009223 Daucus carota HOM05D008081 ORTHO05D010223 3.9e-128 462.2 401 58.4
Cc06_g09100 Coffea canephora HOM05D008081 ORTHO05D010223 1.3e-123 447.2 403 55.3
Ca_02616_v3 Cicer arietinum L. HOM05D008081 ORTHO05D010223 2.1e-121 439.9 398 57.8
Eucgr.L02382 Eucalyptus grandis HOM05D008081 ORTHO05D010223 6.1e-121 438.3 393 56.7
Hma1.2p1_0018F.1_g012950 Hydrangea macrophylla HOM05D008081 ORTHO05D010223 8.8e-120 434.5 393 55.5
QL02p086958 Quercus lobata HOM05D008081 ORTHO05D010223 1.1e-119 434.1 399 56.4
Medtr2g055250 Medicago truncatula HOM05D008081 ORTHO05D010223 2.0e-119 433.3 399 56.1
Psat1g025520 Pisum sativum HOM05D008081 ORTHO05D010223 5.7e-119 431.8 397 56.7
Glyma.06G213000 Glycine max HOM05D008081 ORTHO05D010223 9.7e-119 431.0 402 55.7
CANSAT56G1336 Cannabis sativa HOM05D008081 ORTHO05D010223 4.8e-118 428.7 397 52.4
Manes.14G127800 Manihot esculenta HOM05D008081 ORTHO05D010223 6.3e-118 428.3 398 56.0
Glyma.04G150400 Glycine max HOM05D008081 ORTHO05D010223 7.0e-117 424.9 401 55.1
HanXRQChr10g0316871 Helianthus annuus HOM05D008081 ORTHO05D010223 4.5e-116 422.2 395 52.9
Lj1g0011101 Lotus japonicus HOM05D008081 ORTHO05D010223 4.5e-116 422.2 408 55.9
Lsat_1_v5_gn_5_98420 Lactuca sativa HOM05D008081 ORTHO05D010223 7.7e-116 421.4 399 53.9
Duzib168G0460 Durio zibethinus HOM05D008081 ORTHO05D010223 2.9e-115 419.5 395 53.9
ECA234G2703 Erigeron canadensis HOM05D008081 ORTHO05D010223 3.8e-115 419.1 400 52.8
Nitab4.5_0000282g0020 Nicotiana tabacum HOM05D008081 ORTHO05D010223 3.8e-115 419.1 396 52.3
Phvul.009G199400 Phaseolus vulgaris HOM05D008081 ORTHO05D010223 6.1e-113 411.8 389 55.0
Thecc.09G118700 Theobroma cacao HOM05D008081 ORTHO05D010223 8.0e-113 411.4 397 53.4
VMungo1309G1591 Vigna mungo HOM05D008081 ORTHO05D010223 2.0e-111 406.8 402 53.2
Lalb_Chr01g0020971 Lupinus albus HOM05D008081 ORTHO05D010223 5.7e-111 405.2 397 52.1
COL.COLO4_34977 Corchorus olitorius HOM05D008081 ORTHO05D010223 1.1e-109 401.0 393 52.9
GSVIVG01015465001 Vitis vinifera HOM05D008081 ORTHO05D010223 4.1e-109 399.1 387 51.4
PGR142G1327 Punica granatum HOM05D008081 ORTHO05D010223 7.0e-109 398.3 388 52.3
CSS0001106 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 1.3e-107 394.0 319 58.9
Atru.chr7.1264 Acer truncatum HOM05D008081 ORTHO05D010223 1.7e-107 393.7 407 50.9
CSS0008637 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 8.5e-107 391.3 319 58.6
Potri.018G071900 Populus trichocarpa HOM05D008081 ORTHO05D010223 1.5e-106 390.6 400 53.2
Sabra18G0062600 Salix brachista HOM05D008081 ORTHO05D010223 1.5e-106 390.6 399 52.4
TWI34G1060 Tripterygium wilfordii HOM05D008081 ORTHO05D010223 6.1e-105 385.2 398 51.3
Gohir.D06G057200 Gossypium hirsutum HOM05D008081 ORTHO05D010223 6.8e-104 381.7 395 51.4
Ciclev10008639m.g Citrus clementina HOM05D008081 ORTHO05D010223 3.4e-103 379.4 400 50.0
Gorai.010G066900 Gossypium raimondii HOM05D008081 ORTHO05D010223 4.4e-103 379.0 395 51.4
Oeu032197.1 Olea europaea HOM05D008081 ORTHO05D010223 5.7e-103 378.6 397 49.1
Gohir.A06G059000 Gossypium hirsutum HOM05D008081 ORTHO05D010223 4.8e-102 375.6 395 50.9
Cpa.g.sc75.87 Carica papaya HOM05D008081 ORTHO05D010223 8.3e-102 374.8 367 54.2
Os01g0647000 Oryza sativa ssp. japonica HOM05D008081 ORTHO05D010223 1.4e-101 374.0 393 49.1
Actinidia09389 Actinidia chinensis HOM05D008081 ORTHO05D010223 2.0e-100 370.2 396 47.7
CSS0031360 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 2.0e-100 370.2 319 56.1
Nitab4.5_0003085g0020 Nicotiana tabacum HOM05D008081 ORTHO05D010223 2.0e-100 370.2 361 51.0
PGSC0003DMG400015624 Solanum tuberosum HOM05D008081 ORTHO05D010223 2.3e-99 366.7 400 47.8
Zm00001eb158500 Zea mays HOM05D008081 ORTHO05D010223 2.9e-99 366.3 399 48.6
Sopen08g011800 Solanum pennellii HOM05D008081 ORTHO05D010223 1.1e-98 364.4 402 46.3
Solyc08g041700.1 Solanum lycopersicum HOM05D008081 ORTHO05D010223 2.5e-98 363.2 402 46.0
Eucgr.C01103 Eucalyptus grandis HOM05D008081 ORTHO05D010223 1.4e-96 357.5 322 55.3
Carub.0006s1834 Capsella rubella HOM05D008081 ORTHO05D010223 4.9e-94 349.0 394 48.0
BolC2t06998H Brassica oleracea HOM05D008081 ORTHO05D010223 4.1e-93 345.9 393 47.3
Thhalv10013658m.g Eutrema salsugineum HOM05D008081 ORTHO05D010223 9.2e-93 344.7 393 47.3
BNapus_Darmor_BZH_scaffold_38p01920 Brassica napus HOM05D008081 ORTHO05D010223 1.6e-92 344.0 393 47.1
AT5G19970 Arabidopsis thaliana HOM05D008081 ORTHO05D010223 3.5e-92 342.8 393 47.1
Sp6g24410 Schrenkiella parvula HOM05D008081 ORTHO05D010223 2.3e-91 340.1 395 46.8
A02p05940 Brassica napus HOM05D008081 ORTHO05D010223 8.6e-91 338.2 393 46.6
BraA02t05546Z Brassica rapa HOM05D008081 ORTHO05D010223 8.6e-91 338.2 393 46.6
AL6G31500 Arabidopsis lyrata HOM05D008081 ORTHO05D010223 3.0e-83 313.2 365 46.6
Peaxi162Scf00292g00051 Petunia axillaris HOM05D008081 ORTHO05D010223 6.6e-83 312.0 294 51.4
Thhalv10013905m.g Eutrema salsugineum HOM05D008081 ORTHO05D010223 4.3e-82 309.3 364 45.3
CSS0020794 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 2.1e-81 307.0 392 43.6
Dinv36582 Davidia involucrata HOM05D008081 ORTHO05D010223 2.1e-81 307.0 313 52.4
CARHR192880 Cardamine hirsuta HOM05D008081 ORTHO05D010223 3.6e-81 306.2 369 44.7
THA.LOC104815107 Tarenaya hassleriana HOM05D008081 ORTHO05D010223 1.5e-79 300.8 402 41.0
Aa31LG4G11630 Aethionema arabicum HOM05D008081 ORTHO05D010223 5.1e-75 285.8 352 43.5
ATR0083G076 Amborella trichopoda HOM05D008081 ORTHO05D010223 7.3e-74 282.0 387 39.0
TPR.G30892 Trifolium pratense HOM05D008081 ORTHO05D010223 8.1e-49 198.7 206 50.0
BcaB05g22890 Brassica carinata HOM05D008081 ORTHO05D010223 4.3e-42 176.4 240 40.4
BcaC03g13723 Brassica carinata HOM05D008081 ORTHO05D010223 2.5e-26 124.0 139 45.3
SMO116G0409 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 1.3e-09 68.6 397 21.4
SEGI_09302 Sequoiadendron giganteum HOM05D017074 ORTHO05D019364 2.6e-07 60.8 339 23.3


User provided reference genes

Program Settings