Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11883 Nelumbo nucifera HOM05D001608 ORTHO05D014300 2.8e-42 174.9 87 100.0
Nn1g03451 Nelumbo nucifera HOM05D001608 ORTHO05D002070 2.4e-17 92.0 54 85.2
Nn1g07232 Nelumbo nucifera HOM05D001608 ORTHO05D002070 1.1e-14 83.2 54 77.8
TAR626G1379 Trochodendron aralioides HOM05D001608 ORTHO05D002070 3.9e-12 74.7 54 72.2
TAR624G0321 Trochodendron aralioides HOM05D001608 ORTHO05D002070 5.6e-11 70.9 54 72.2
Dinv22245 Davidia involucrata HOM05D001608 ORTHO05D002070 7.3e-11 70.5 54 72.2
Duzib170G0224 Durio zibethinus HOM05D001608 ORTHO05D002070 1.3e-10 69.7 54 68.5
Manes.15G068100 Manihot esculenta HOM05D001608 ORTHO05D002070 1.6e-10 69.3 54 66.7
Thecc.09G223800 Theobroma cacao HOM05D001608 ORTHO05D002070 2.1e-10 68.9 54 66.7
Carub.0003s2076 Capsella rubella HOM05D001608 ORTHO05D002070 4.8e-10 67.8 54 63.0
Aa31LG8G7610 Aethionema arabicum HOM05D001608 ORTHO05D002070 6.2e-10 67.4 54 63.0
MD16G1004000 Malus domestica HOM05D001608 ORTHO05D002070 1.1e-09 66.6 53 66.0
Gohir.D13G219300 Gossypium hirsutum HOM05D001608 ORTHO05D002070 1.4e-09 66.2 52 67.3
Gorai.013G250200 Gossypium raimondii HOM05D001608 ORTHO05D002070 1.4e-09 66.2 52 67.3
FAN12G2715 Fragaria x ananassa HOM05D001608 ORTHO05D002070 1.8e-09 65.9 54 64.8
QL08p008729 Quercus lobata HOM05D001608 ORTHO05D014300 1.8e-09 65.9 54 64.8
QL09p024286 Quercus lobata HOM05D001608 ORTHO05D002070 1.8e-09 65.9 54 64.8
Potri.011G086800 Populus trichocarpa HOM05D001608 ORTHO05D002070 2.4e-09 65.5 55 67.3
TAR629G2112 Trochodendron aralioides HOM05D001608 ORTHO05D002070 2.4e-09 65.5 54 64.8
GSVIVG01037696001 Vitis vinifera HOM05D001608 ORTHO05D014300 2.4e-09 65.5 54 61.1
Cfa020305 Carpinus fangiana HOM05D001608 ORTHO05D002070 3.1e-09 65.1 54 63.0
CiPaw.12G132100 Carya illinoinensis HOM05D001608 ORTHO05D002070 3.1e-09 65.1 54 64.8
MBI10_g29395_MAGBIO Magnolia biondii HOM05D001608 ORTHO05D002070 3.1e-09 65.1 54 66.7
AL3G34720 Arabidopsis lyrata HOM05D001608 ORTHO05D002070 4.0e-09 64.7 54 61.1
Gohir.A13G215600 Gossypium hirsutum HOM05D001608 ORTHO05D002070 4.0e-09 64.7 52 65.4
AT3G20800 Arabidopsis thaliana HOM05D001608 ORTHO05D002070 5.3e-09 64.3 54 61.1
Thhalv10021160m.g Eutrema salsugineum HOM05D001608 ORTHO05D002070 5.3e-09 64.3 54 61.1
MD13G1003400 Malus domestica HOM05D001608 ORTHO05D002070 5.3e-09 64.3 54 64.8
Actinidia26615 Actinidia chinensis HOM05D001608 ORTHO05D014300 6.9e-09 63.9 55 65.5
Actinidia35363 Actinidia chinensis HOM05D001608 ORTHO05D014300 6.9e-09 63.9 55 65.5
A05p27980 Brassica napus HOM05D001608 ORTHO05D002070 6.9e-09 63.9 54 63.0
BraA05t21681Z Brassica rapa HOM05D001608 ORTHO05D002070 6.9e-09 63.9 54 63.0
Sp3g18820 Schrenkiella parvula HOM05D001608 ORTHO05D002070 6.9e-09 63.9 54 61.1
Prupe.1G349000 Prunus persica HOM05D001608 ORTHO05D002070 9.0e-09 63.5 54 64.8
FAN07G2124 Fragaria x ananassa HOM05D001608 ORTHO05D002070 1.2e-08 63.2 54 64.8
FAN17G1764 Fragaria x ananassa HOM05D001608 ORTHO05D002070 1.2e-08 63.2 54 64.8
BcaB06g26150 Brassica carinata HOM05D001608 ORTHO05D002070 1.5e-08 62.8 54 63.0
FvH4_4g37120 Fragaria vesca HOM05D001608 ORTHO05D002070 1.5e-08 62.8 54 63.0
RcHm_v2.0_Chr4g0446921 Rosa chinensis HOM05D001608 ORTHO05D002070 1.5e-08 62.8 54 64.8
Ciclev10010530m.g Citrus clementina HOM05D001608 ORTHO05D002070 2.0e-08 62.4 56 67.9
Manes.03G133200 Manihot esculenta HOM05D001608 ORTHO05D002070 2.0e-08 62.4 54 63.0
BcaC09g49022 Brassica carinata HOM05D001608 ORTHO05D002070 4.4e-08 61.2 54 61.1
A01p34020 Brassica napus HOM05D001608 ORTHO05D002070 4.4e-08 61.2 54 61.1
C01p43420 Brassica napus HOM05D001608 ORTHO05D002070 4.4e-08 61.2 54 61.1
BraA01t03506Z Brassica rapa HOM05D001608 ORTHO05D002070 4.4e-08 61.2 54 61.1
Cpa.g.sc84.105 Carica papaya HOM05D001608 ORTHO05D002070 4.4e-08 61.2 55 61.8
BcaB04g20627 Brassica carinata HOM05D001608 ORTHO05D002070 5.8e-08 60.8 54 61.1
BcaC05g28280 Brassica carinata HOM05D001608 ORTHO05D002070 5.8e-08 60.8 54 63.0
C05p43280 Brassica napus HOM05D001608 ORTHO05D002070 5.8e-08 60.8 54 63.0
BolC5t33060H Brassica oleracea HOM05D001608 ORTHO05D002070 5.8e-08 60.8 54 63.0
CSS0031204 Camellia sinensis var. sinensis HOM05D001608 ORTHO05D002070 5.8e-08 60.8 54 61.1
Gorai.010G128500 Gossypium raimondii HOM05D001608 ORTHO05D002070 5.8e-08 60.8 54 59.3
ClCG09G010980 Citrullus lanatus HOM05D001608 ORTHO05D002070 7.6e-08 60.5 54 59.3
Nn6g35169 Nelumbo nucifera HOM05D001608 ORTHO05D002070 7.6e-08 60.5 54 59.3
MELO3C013140.2 Cucumis melo HOM05D001608 ORTHO05D002070 9.9e-08 60.1 54 59.3
CsaV3_7G022000 Cucumis sativus L. HOM05D001608 ORTHO05D002070 9.9e-08 60.1 54 59.3
Rhsim06G0220400 Rhododendron simsii HOM05D001608 ORTHO05D002070 9.9e-08 60.1 54 55.6
TWI39G0872 Tripterygium wilfordii HOM05D001608 ORTHO05D002070 9.9e-08 60.1 57 56.1
Potri.001G359300 Populus trichocarpa HOM05D001608 ORTHO05D002070 1.3e-07 59.7 57 61.4
Gohir.A06G108700 Gossypium hirsutum HOM05D001608 ORTHO05D002070 1.7e-07 59.3 54 57.4
Sed0022863 Sechium edule HOM05D001608 ORTHO05D002070 1.7e-07 59.3 54 57.4
Eucgr.F00722 Eucalyptus grandis HOM05D001608 ORTHO05D002070 2.2e-07 58.9 55 61.8
Gohir.D06G112700 Gossypium hirsutum HOM05D001608 ORTHO05D002070 2.2e-07 58.9 54 57.4
CARHR096640 Cardamine hirsuta HOM05D001608 ORTHO05D002070 2.9e-07 58.5 55 56.4
Cc05_g14080 Coffea canephora HOM05D001608 ORTHO05D002070 2.9e-07 58.5 58 60.3
Nn2g13904 Nelumbo nucifera HOM05D001608 ORTHO05D002070 2.9e-07 58.5 51 58.8
PGR031G1391 Punica granatum HOM05D001608 ORTHO05D002070 3.8e-07 58.2 59 59.3
HPP92_000964 Vanilla planifolia HOM05D001608 ORTHO05D002070 3.8e-07 58.2 55 58.2
Actinidia32267 Actinidia chinensis HOM05D001608 ORTHO05D002070 6.4e-07 57.4 54 59.3
Sabra16G0237000 Salix brachista HOM05D001608 ORTHO05D002070 6.4e-07 57.4 57 59.6
arahy.Tifrunner.gnm1.ann1.NRH3QV Arachis hypogaea HOM05D001608 ORTHO05D002070 8.4e-07 57.0 60 56.7
arahy.Tifrunner.gnm1.ann1.RCKD5T Arachis hypogaea HOM05D001608 ORTHO05D002070 8.4e-07 57.0 60 56.7
TWI38G1473 Tripterygium wilfordii HOM05D001608 ORTHO05D002070 8.4e-07 57.0 57 54.4
THA.LOC104817897 Tarenaya hassleriana HOM05D001608 ORTHO05D002070 1.4e-06 56.2 54 57.4
COL.COLO4_09899 Corchorus olitorius HOM05D001608 ORTHO05D002070 2.4e-06 55.5 45 64.4
Lalb_Chr15g0081501 Lupinus albus HOM05D001608 ORTHO05D002070 3.2e-06 55.1 69 52.2
Sc16g0005850 Simmondsia chinensis HOM05D001608 ORTHO05D002070 3.2e-06 55.1 55 63.6
TWI38G0984 Tripterygium wilfordii HOM05D001608 ORTHO05D002070 4.2e-06 54.7 58 55.2
CiPaw.11G192700 Carya illinoinensis HOM05D001608 ORTHO05D002070 5.4e-06 54.3 45 62.2
SHI26583 Sapria himalayana HOM05D001608 ORTHO05D002070 5.4e-06 54.3 54 55.6
vmacro02213 Vaccinium macrocarpon HOM05D001608 ORTHO05D002070 7.1e-06 53.9 56 53.6


User provided reference genes

Program Settings