Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.1e-102 376.7 194 100.0
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 9.8e-48 194.1 148 68.9
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 5.2e-33 145.2 155 53.5
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 6.0e-29 131.7 155 50.3
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 5.8e-24 115.2 144 46.5
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 2.9e-23 112.8 169 43.8
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 7.1e-22 108.2 162 42.6
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 4.6e-21 105.5 152 45.4
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 6.0e-21 105.1 155 47.1
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 7.8e-21 104.8 152 46.1
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 7.8e-21 104.8 152 42.8
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 1.3e-20 104.0 152 46.1
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.3e-20 104.0 152 46.1
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 1.7e-20 103.6 152 46.1
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.9e-20 102.4 152 45.4
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 5.1e-20 102.1 153 41.2
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 6.6e-20 101.7 152 43.4
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 8.6e-20 101.3 152 44.7
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 2.5e-19 99.8 152 42.8
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 3.3e-19 99.4 152 44.7
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 7.3e-19 98.2 153 43.1
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 9.6e-19 97.8 152 42.8
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 9.6e-19 97.8 155 41.9
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 1.2e-18 97.4 128 46.1
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-18 97.4 155 41.9
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 2.1e-18 96.7 154 42.2
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 2.1e-18 96.7 185 39.5
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 2.1e-18 96.7 153 45.8
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.7e-18 95.5 152 41.4
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 4.7e-18 95.5 156 41.0
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 4.7e-18 95.5 159 39.0
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 8.1e-18 94.7 153 42.5
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 3.1e-17 92.8 167 43.1
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 3.1e-17 92.8 158 40.5
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 3.1e-17 92.8 155 42.6
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 4.0e-17 92.4 155 40.6
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 3.4e-16 89.4 152 41.4
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 4.4e-16 89.0 152 41.4
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 9.9e-16 87.8 155 40.6
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 9.9e-16 87.8 152 40.1
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.7e-15 87.0 163 41.1
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 2.2e-15 86.7 158 38.0
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 3.8e-15 85.9 152 39.5
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 8.4e-15 84.7 154 40.3
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 1.1e-14 84.3 153 40.5
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.4e-14 84.0 152 42.1
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 3.2e-14 82.8 155 41.3
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 4.2e-14 82.4 154 39.6
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 5.4e-14 82.0 153 39.2
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 9.3e-14 81.3 156 38.5
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 9.3e-14 81.3 155 39.4
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 2.7e-13 79.7 152 37.5
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 3.5e-13 79.3 166 39.8
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 4.6e-13 79.0 103 43.7
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 4.6e-13 79.0 153 38.6
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 1.3e-12 77.4 157 36.3
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.3e-12 77.4 165 35.8
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 1.7e-12 77.0 157 40.8
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 2.3e-12 76.6 160 37.5
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.3e-12 76.6 153 36.6
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.3e-12 76.6 165 35.8
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 2.3e-12 76.6 162 35.8
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 3.0e-12 76.3 156 35.3
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 3.0e-12 76.3 160 36.2
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 3.0e-12 76.3 152 38.8
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.9e-12 75.9 153 37.9
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.9e-12 75.9 153 37.9
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.9e-12 75.9 152 38.2
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.9e-12 75.9 153 36.6
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 3.9e-12 75.9 152 36.2
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.1e-12 75.5 153 35.3
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 5.1e-12 75.5 152 37.5
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 5.1e-12 75.5 164 37.2
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.6e-12 75.1 152 38.2
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.6e-12 75.1 152 38.2
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 8.7e-12 74.7 152 38.8
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 8.7e-12 74.7 162 33.3
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 1.1e-11 74.3 152 36.8
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-11 74.3 152 38.2
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-11 74.3 152 38.2
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 1.1e-11 74.3 157 36.3
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.5e-11 73.9 153 36.6
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.3e-11 71.6 152 34.9
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 7.3e-11 71.6 152 40.8
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 7.3e-11 71.6 166 37.3
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 7.3e-11 71.6 153 35.9
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 7.3e-11 71.6 153 35.9
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.6e-11 71.2 156 35.3
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 9.6e-11 71.2 152 34.2
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.6e-10 70.5 153 34.6
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 1.6e-10 70.5 162 35.8
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 2.1e-10 70.1 155 35.5
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 2.1e-10 70.1 152 34.9
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 2.8e-10 69.7 159 34.6
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 2.8e-10 69.7 159 34.0
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 4.8e-10 68.9 152 35.5
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 4.8e-10 68.9 155 38.1
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 6.2e-10 68.6 159 34.6
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 6.2e-10 68.6 159 34.6
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 1.4e-09 67.4 147 36.1
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 1.4e-09 67.4 151 34.4
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 1.8e-09 67.0 152 34.9
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.8e-09 67.0 148 32.4
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.8e-09 67.0 152 34.9
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.8e-09 67.0 163 36.8
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 2.4e-09 66.6 67 55.2
ATR0037G046 Amborella trichopoda HOM05D004036 ORTHO05D004576 3.1e-09 66.2 157 31.8
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 3.1e-09 66.2 152 34.2
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 4.0e-09 65.9 160 32.5
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 5.3e-09 65.5 152 34.2
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 1.5e-08 63.9 152 34.2
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 1.5e-08 63.9 157 35.7
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.0e-08 63.5 157 31.2
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 2.6e-08 63.2 152 35.5
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 3.4e-08 62.8 159 35.2
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 4.5e-08 62.4 159 33.3
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 7.6e-08 61.6 105 39.0
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 7.6e-08 61.6 152 33.6
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 7.6e-08 61.6 152 33.6
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 7.6e-08 61.6 158 32.3
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 7.6e-08 61.6 159 34.6
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 9.9e-08 61.2 163 31.9
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 9.9e-08 61.2 40 75.0
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 2.2e-07 60.1 159 33.3
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 2.2e-07 60.1 159 32.1
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 3.8e-07 59.3 155 32.3
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 3.8e-07 59.3 147 33.3
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 3.8e-07 59.3 148 31.1
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 4.9e-07 58.9 164 28.7
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 6.4e-07 58.5 154 33.1
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 6.4e-07 58.5 196 28.6
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 1.1e-06 57.8 159 30.8
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 1.1e-06 57.8 164 28.7
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-06 57.8 45 57.8
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-06 57.8 45 57.8
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 3.2e-06 56.2 161 29.2
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 3.2e-06 56.2 161 29.2
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 4.2e-06 55.8 158 31.0
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 4.2e-06 55.8 158 33.5
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 4.2e-06 55.8 157 30.6
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 5.4e-06 55.5 161 29.2
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 7.1e-06 55.1 153 30.7
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 7.1e-06 55.1 163 33.7
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 7.1e-06 55.1 152 32.2
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 9.3e-06 54.7 159 31.4
C04p56020 Brassica napus HOM05D000001 ORTHO05D004044 9.3e-06 54.7 160 28.1
BolC4t27135H Brassica oleracea HOM05D000001 ORTHO05D004044 9.3e-06 54.7 160 28.1


User provided reference genes

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