Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-62 243.0 113 100.0
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 1.2e-18 96.7 111 43.2
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 2.8e-18 95.5 111 41.4
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 2.3e-17 92.4 107 41.1
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 6.8e-17 90.9 115 39.1
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 8.9e-17 90.5 102 42.2
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 1.2e-16 90.1 107 43.9
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 1.2e-16 90.1 112 41.1
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 7.5e-16 87.4 123 38.2
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 9.8e-16 87.0 110 40.9
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 3.7e-15 85.1 101 43.6
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 4.9e-15 84.7 99 44.4
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 4.9e-15 84.7 109 39.4
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 6.4e-15 84.3 118 39.0
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 6.4e-15 84.3 111 43.2
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 6.4e-15 84.3 110 46.4
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.1e-14 83.6 112 39.3
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 1.1e-14 83.6 114 39.5
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 2.4e-14 82.4 115 38.3
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.2e-14 82.0 114 41.2
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 3.2e-14 82.0 102 40.2
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 3.2e-14 82.0 113 38.9
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 4.1e-14 81.6 93 40.9
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 5.4e-14 81.3 100 44.0
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 7.0e-14 80.9 102 40.2
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 7.0e-14 80.9 102 40.2
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 9.2e-14 80.5 102 40.2
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 9.2e-14 80.5 114 40.4
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 1.6e-13 79.7 113 37.2
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 2.0e-13 79.3 119 37.0
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 2.7e-13 79.0 113 37.2
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 3.5e-13 78.6 92 42.4
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 3.5e-13 78.6 116 38.8
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 3.5e-13 78.6 116 35.3
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 3.5e-13 78.6 112 38.4
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 6.0e-13 77.8 107 37.4
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 6.0e-13 77.8 116 35.3
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 7.8e-13 77.4 108 39.8
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 7.8e-13 77.4 107 37.4
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 7.8e-13 77.4 118 34.7
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 7.8e-13 77.4 112 36.6
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 1.0e-12 77.0 113 35.4
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 1.3e-12 76.6 109 38.5
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 2.3e-12 75.9 128 34.4
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 3.0e-12 75.5 123 33.3
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 3.0e-12 75.5 116 34.5
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 3.0e-12 75.5 114 36.0
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 5.0e-12 74.7 106 43.4
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 8.6e-12 73.9 124 33.9
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.5e-11 73.2 104 38.5
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 1.5e-11 73.2 112 33.9
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 1.9e-11 72.8 81 45.7
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 3.3e-11 72.0 104 38.5
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 4.3e-11 71.6 114 33.3
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 5.6e-11 71.2 115 34.8
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 9.5e-11 70.5 125 31.2
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.2e-10 70.1 87 41.4
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 1.6e-10 69.7 110 37.3
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 1.6e-10 69.7 99 34.3
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 2.1e-10 69.3 101 33.7
PGR102G1467 Punica granatum HOM05D005672 ORTHO05D003038 2.1e-10 69.3 115 35.7
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.8e-10 68.9 99 39.4
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.8e-10 68.9 112 35.7
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 4.7e-10 68.2 112 34.8
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 6.2e-10 67.8 112 34.8
Nn8g39241 Nelumbo nucifera HOM05D005672 ORTHO05D003038 6.2e-10 67.8 114 37.7
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 8.1e-10 67.4 104 36.5
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 1.1e-09 67.0 119 31.9
Nn8g39242 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-09 67.0 114 38.6
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 1.1e-09 67.0 112 37.5
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 1.1e-09 67.0 112 37.5
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 1.4e-09 66.6 73 42.5
Nn8g39243 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.8e-09 66.2 113 37.2
Peaxi162Scf00207g00940 Petunia axillaris HOM05D005672 ORTHO05D003038 2.3e-09 65.9 106 36.8
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 6.8e-09 64.3 107 33.6
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 6.8e-09 64.3 107 33.6
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 8.9e-09 63.9 97 37.1
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 1.5e-08 63.2 108 36.1
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 2.0e-08 62.8 114 33.3
MELO3C023363.2 Cucumis melo HOM05D005672 ORTHO05D003038 5.8e-08 61.2 120 28.3
CAN.G438.58 Capsicum annuum HOM05D005672 ORTHO05D003038 9.9e-08 60.5 125 31.2
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 1.3e-07 60.1 95 40.0
Sed0004804 Sechium edule HOM05D005672 ORTHO05D003038 1.3e-07 60.1 83 37.3
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 2.9e-07 58.9 116 31.0
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 8.3e-07 57.4 64 48.4
DCAR_026309 Daucus carota HOM05D005672 ORTHO05D003038 3.2e-06 55.5 105 29.5
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 4.1e-06 55.1 114 30.7
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 4.1e-06 55.1 72 40.3
Migut.I00852 Erythranthe guttata HOM05D005672 ORTHO05D003038 5.4e-06 54.7 79 35.4


User provided reference genes

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