Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 0.0e+00 2652.1 1309 100.0
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 0.0e+00 1146.0 1310 51.2
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 7.9e-250 868.2 1460 40.3
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 2.7e-141 507.7 1335 32.3
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 6.7e-140 503.1 1393 31.6
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 7.1e-126 456.4 1416 30.9
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.1e-113 414.5 559 46.9
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 3.2e-110 404.4 1403 28.8
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 6.1e-109 400.2 1403 28.9
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 3.1e-105 387.9 1466 28.2
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 4.2e-102 377.5 1413 28.1
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 1.3e-95 355.9 1409 28.0
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 2.9e-95 354.8 1390 27.9
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 4.2e-94 350.9 1404 27.1
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 5.5e-94 350.5 1404 28.2
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 2.2e-90 338.6 1392 27.1
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 8.2e-90 336.7 1405 27.6
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 1.2e-88 332.8 1407 28.4
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.2e-85 322.8 1396 27.3
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 8.8e-84 316.6 1417 26.4
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 4.4e-83 314.3 1430 26.8
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 2.2e-82 312.0 1394 27.5
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 2.2e-82 312.0 1379 26.6
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 2.8e-82 311.6 1348 27.2
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 2.4e-81 308.5 1392 27.2
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 4.1e-81 307.8 1413 27.2
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.0e-80 305.4 1346 27.0
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 7.7e-80 303.5 1027 28.2
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 1.9e-78 298.9 1398 26.5
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.5e-78 298.5 1417 25.9
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 5.5e-78 297.4 1386 26.4
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 5.2e-76 290.8 1426 25.9
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 8.9e-76 290.0 1345 26.7
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.4e-75 288.1 1416 26.1
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.4e-75 287.7 1422 25.7
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 2.2e-74 285.4 1308 26.8
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.6e-72 279.3 1362 25.6
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 7.8e-72 276.9 1379 25.6
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.3e-71 276.2 1381 25.8
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.5e-70 272.7 1379 25.5
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 4.4e-67 261.2 1465 24.8
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.1e-65 256.5 1286 26.3
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 8.3e-58 230.3 1398 24.9
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 1.1e-57 229.9 1030 27.2
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 9.2e-57 226.9 1370 25.2
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 1.3e-55 223.0 1224 25.7
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.5e-54 218.8 1331 24.7
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.1e-52 213.4 1179 24.8
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 2.6e-51 208.8 1362 23.5
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 6.4e-50 204.1 241 43.6
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 2.4e-49 202.2 868 26.8
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 7.1e-49 200.7 1323 23.7
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.0e-47 196.8 1337 24.2
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 1.7e-47 196.1 1391 24.7
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 7.3e-46 190.7 1370 22.9
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.2e-45 189.9 1303 22.9
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 1.4e-44 186.4 1351 23.0
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 1.8e-44 186.0 1350 23.3
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 2.4e-44 185.7 1140 25.9
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 5.2e-44 184.5 1338 23.4
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 2.6e-43 182.2 1368 23.9
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 3.4e-43 181.8 1295 24.0
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 1.7e-42 179.5 1368 23.8
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 8.4e-42 177.2 1331 23.7
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 6.0e-40 171.0 1371 23.4
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 1.3e-39 169.9 1329 23.0
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 1.3e-39 169.9 1304 23.8
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 1.5e-38 166.4 1348 22.8
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 2.5e-38 165.6 1303 23.8
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 7.3e-38 164.1 964 25.8
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 2.8e-37 162.2 1353 23.7
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.1e-36 160.2 1313 22.5
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 1.8e-36 159.5 1362 24.2
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 9.0e-36 157.1 1392 22.8
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 5.8e-35 154.5 400 32.2
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 1.3e-34 153.3 1354 22.7
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 6.4e-34 151.0 1388 22.6
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.3e-31 143.3 1329 23.3
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 1.7e-31 142.9 1381 23.2
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.0e-31 142.1 1403 23.4
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.9e-31 141.7 1387 22.9
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.9e-31 141.7 1386 23.3
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 1.6e-29 136.3 1294 23.0
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 6.2e-29 134.4 1204 22.1
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 2.4e-28 132.5 835 24.8
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 4.0e-28 131.7 1319 23.2
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.3e-28 131.3 1360 22.5
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 6.9e-28 131.0 1341 22.8
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 4.9e-26 124.8 1329 21.9
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.1e-25 123.6 765 24.8
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 9.3e-25 120.6 1332 21.8
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 2.1e-24 119.4 626 25.1
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 2.7e-24 119.0 1339 22.6
TAR626G1566 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.7e-24 119.0 216 39.4
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 3.5e-24 118.6 1352 23.0
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 6.0e-24 117.9 1409 23.1
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 7.9e-24 117.5 1349 21.6
Aqoxy4G01254 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 3.0e-23 115.5 408 31.1
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 8.7e-23 114.0 1335 22.1
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 4.3e-22 111.7 590 26.1
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.6e-21 109.8 553 26.0
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 2.8e-21 109.0 670 23.3
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 1.8e-20 106.3 1376 21.5
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 3.1e-20 105.5 569 26.0
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 5.3e-20 104.8 221 34.4
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 1.5e-19 103.2 1370 21.8
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 1.3e-18 100.1 107 48.6
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.3e-18 100.1 1271 22.4
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 1.7e-18 99.8 1430 21.7
Dinv30475 Davidia involucrata HOM05D024977 ORTHO05D003767 1.1e-17 97.1 479 25.3
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 1.4e-17 96.7 1313 22.5
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 5.5e-17 94.7 118 42.4
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 2.7e-16 92.4 811 23.2
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 3.5e-16 92.0 233 30.5
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 1.0e-15 90.5 121 39.7
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.8e-15 89.7 249 30.1
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 3.0e-15 89.0 178 35.4
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 7.4e-14 84.3 95 41.1
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 1.3e-13 83.6 128 38.3
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 2.8e-13 82.4 93 43.0
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 4.8e-13 81.6 1355 21.5
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 4.8e-13 81.6 104 43.3
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 6.2e-13 81.3 105 43.8
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 6.2e-13 81.3 97 44.3
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 6.2e-13 81.3 95 45.3
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 6.2e-13 81.3 95 45.3
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 6.2e-13 81.3 95 45.3
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 6.2e-13 81.3 93 47.3
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 8.2e-13 80.9 95 38.9
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.1e-12 80.5 105 41.9
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 2.4e-12 79.3 546 24.4
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 2.4e-12 79.3 546 24.4
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 2.4e-12 79.3 546 24.4
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 3.1e-12 79.0 88 45.5
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 3.1e-12 79.0 93 46.2
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 4.0e-12 78.6 158 31.0
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 6.9e-12 77.8 57 56.1
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 6.9e-12 77.8 109 39.4
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 9.0e-12 77.4 156 31.4
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 1.2e-11 77.0 80 45.0
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 1.5e-11 76.6 92 43.5
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 1.5e-11 76.6 92 43.5
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 1.5e-11 76.6 95 40.0
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 2.6e-11 75.9 167 29.3
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 3.4e-11 75.5 81 48.1
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 4.5e-11 75.1 110 46.4
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 4.5e-11 75.1 124 37.9
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 5.8e-11 74.7 81 48.1
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 7.6e-11 74.3 60 51.7
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 1.0e-10 73.9 81 48.1
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.2e-10 72.8 104 42.3
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 2.9e-10 72.4 929 22.3
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 3.8e-10 72.0 71 46.5
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 6.5e-10 71.2 110 36.4
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 6.5e-10 71.2 98 42.9
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 7.1e-09 67.8 558 23.3
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 9.3e-09 67.4 86 39.5
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.2e-08 67.0 86 37.2
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 1.6e-08 66.6 659 22.9
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 1.6e-08 66.6 57 52.6
SEGI_37840 Sequoiadendron giganteum HOM05D028836 ORTHO05D003767 2.1e-08 66.2 92 40.2
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 2.1e-08 66.2 119 36.1
Rhsim08G0224300 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.7e-08 65.9 125 35.2
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 2.7e-08 65.9 62 41.9
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 3.5e-08 65.5 114 37.7
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 6.1e-08 64.7 112 35.7
CDE05G2697 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 1.3e-07 63.5 699 23.7
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 1.8e-07 63.2 663 23.5
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 3.0e-07 62.4 76 42.1
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 5.1e-07 61.6 83 39.8
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 1.5e-06 60.1 109 33.0
Zm00001eb417870 Zea mays HOM05D018893 ORTHO05D020945 4.3e-06 58.5 98 33.7
VMungo0647G2380 Vigna mungo HOM05D058389 ORTHO05D003767 7.4e-06 57.8 93 35.5


User provided reference genes

Program Settings