Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 8.9e-81 303.5 151 100.0
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 2.9e-71 271.9 150 90.0
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 1.4e-70 269.6 151 86.8
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 2.4e-70 268.9 151 86.1
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 2.7e-69 265.4 153 84.3
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 2.3e-68 262.3 153 83.7
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 3.9e-68 261.5 152 82.2
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 3.9e-68 261.5 153 83.7
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.9e-68 261.5 145 87.6
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 3.9e-68 261.5 145 87.6
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 5.1e-68 261.2 145 86.9
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 6.6e-68 260.8 153 83.7
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 6.6e-68 260.8 153 83.7
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.1e-67 260.0 145 86.9
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 1.5e-67 259.6 145 86.9
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 2.5e-67 258.8 153 83.0
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 4.3e-67 258.1 153 82.4
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 7.3e-67 257.3 146 84.2
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 7.3e-67 257.3 153 83.7
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 9.6e-67 256.9 146 85.6
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 9.6e-67 256.9 153 83.0
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 9.6e-67 256.9 153 81.0
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 1.3e-66 256.5 152 82.9
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 1.3e-66 256.5 152 80.9
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.6e-66 256.1 153 83.0
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 2.1e-66 255.8 145 84.8
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 2.1e-66 255.8 143 86.7
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 2.1e-66 255.8 153 82.4
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 2.8e-66 255.4 146 82.9
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.8e-66 255.4 150 85.3
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 6.2e-66 254.2 153 81.0
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 6.2e-66 254.2 152 78.9
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 8.1e-66 253.8 147 83.7
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 1.1e-65 253.4 150 81.3
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.1e-65 253.4 150 81.3
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.1e-65 253.4 143 84.6
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 1.1e-65 253.4 152 82.2
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 1.4e-65 253.1 149 81.2
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 1.4e-65 253.1 152 80.3
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 1.8e-65 252.7 153 79.1
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 1.8e-65 252.7 152 80.3
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 1.8e-65 252.7 152 80.3
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 1.8e-65 252.7 150 82.0
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.4e-65 252.3 150 80.7
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.4e-65 252.3 143 83.9
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 2.4e-65 252.3 152 78.9
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 3.1e-65 251.9 145 84.1
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 4.0e-65 251.5 158 81.6
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 4.0e-65 251.5 143 85.3
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 5.3e-65 251.1 143 83.9
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 6.9e-65 250.8 152 79.6
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 6.9e-65 250.8 152 79.6
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 9.0e-65 250.4 152 78.9
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 9.0e-65 250.4 148 82.4
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 9.0e-65 250.4 152 79.6
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 9.0e-65 250.4 150 80.7
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 9.0e-65 250.4 152 79.6
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 1.2e-64 250.0 153 79.1
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 1.2e-64 250.0 152 78.9
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 1.5e-64 249.6 153 79.1
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 1.5e-64 249.6 153 81.0
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 2.0e-64 249.2 141 85.8
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 3.4e-64 248.4 154 79.2
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 4.5e-64 248.1 148 80.4
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 4.5e-64 248.1 141 85.1
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 4.5e-64 248.1 153 77.1
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 5.8e-64 247.7 141 83.7
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 7.6e-64 247.3 149 79.2
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 9.9e-64 246.9 141 83.7
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 1.7e-63 246.1 176 72.2
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 1.7e-63 246.1 145 81.4
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 2.9e-63 245.4 148 81.1
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 4.9e-63 244.6 153 78.4
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 6.4e-63 244.2 146 82.2
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 1.4e-62 243.0 150 76.7
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.9e-62 242.7 141 83.0
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 2.4e-62 242.3 156 75.6
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 4.2e-62 241.5 142 81.7
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 4.2e-62 241.5 141 83.0
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 5.4e-62 241.1 151 74.8
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 9.3e-62 240.4 156 75.0
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 2.7e-61 238.8 150 74.0
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 2.7e-61 238.8 153 73.2
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 2.7e-61 238.8 153 77.1
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 3.5e-61 238.4 154 72.1
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 7.9e-61 237.3 141 79.4
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 1.0e-60 236.9 156 75.0
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 1.8e-60 236.1 157 74.5
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 1.8e-60 236.1 172 68.6
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 1.8e-60 236.1 152 74.3
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 5.1e-60 234.6 160 74.4
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 1.1e-59 233.4 154 69.5
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.1e-59 233.4 153 76.5
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 1.5e-59 233.0 150 73.3
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 1.9e-59 232.6 158 71.5
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 3.3e-59 231.9 149 77.2
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 3.3e-59 231.9 151 73.5
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 4.3e-59 231.5 144 77.8
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 1.3e-58 229.9 143 78.3
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 1.3e-58 229.9 142 78.2
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 1.3e-58 229.9 161 70.2
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 6.2e-58 227.6 151 72.2
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 1.8e-57 226.1 141 77.3
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 4.0e-57 224.9 142 76.8
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 9.0e-57 223.8 142 76.1
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 1.5e-56 223.0 156 73.1
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 1.5e-56 223.0 144 75.0
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 2.9e-55 218.8 141 75.9
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 2.9e-55 218.8 141 75.9
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 2.9e-55 218.8 141 75.9
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 4.9e-55 218.0 156 71.8
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 6.4e-55 217.6 141 75.2
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 2.4e-54 215.7 141 75.2
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 2.4e-54 215.7 141 75.2
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.4e-54 215.7 148 75.7
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 9.3e-54 213.8 141 73.8
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 9.3e-54 213.8 141 73.8
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 2.1e-53 212.6 156 67.9
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 2.8e-50 202.2 191 55.5
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 1.3e-47 193.4 123 76.4
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 6.5e-47 191.0 145 68.3
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 4.6e-45 184.9 131 67.2
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 3.9e-44 181.8 149 61.1
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 3.7e-42 175.3 105 79.0
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 1.2e-37 160.2 104 75.0
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 2.7e-37 159.1 147 56.5
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 1.8e-36 156.4 92 81.5
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 6.3e-34 147.9 138 52.9
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 2.0e-32 142.9 92 71.7
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 4.5e-32 141.7 98 71.4
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 1.0e-28 130.6 147 46.3
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 1.8e-28 129.8 87 71.3
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 4.1e-25 118.6 70 77.1
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 2.9e-23 112.5 122 48.4
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 4.7e-21 105.1 122 45.9
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 9.4e-14 80.9 50 82.0
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 4.7e-13 78.6 48 77.1


User provided reference genes

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