Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1952.6 990 100.0
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1602.4 984 80.8
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1563.5 984 77.9
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1555.8 986 77.8
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1544.6 984 77.9
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1538.5 984 75.4
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1527.3 985 76.0
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1519.6 989 75.9
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1519.2 958 77.5
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1516.1 985 75.8
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1513.8 983 76.8
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1513.4 983 75.9
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1511.1 984 74.9
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1505.7 983 75.2
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1505.3 984 74.5
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1492.2 991 74.4
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1491.1 983 74.0
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1488.4 984 74.2
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1486.1 984 74.6
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1486.1 985 74.5
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1483.0 984 74.7
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1483.0 984 73.0
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1480.7 984 73.8
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1478.4 984 73.8
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1476.5 985 74.0
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1476.1 984 72.6
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1474.5 985 73.9
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1473.0 984 73.9
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1472.2 984 72.9
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1468.8 984 73.2
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1467.6 985 73.6
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1466.8 984 72.7
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1462.2 984 72.8
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1461.8 984 72.4
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1461.4 984 72.6
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1460.7 984 72.6
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1460.7 985 72.7
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1458.7 985 72.9
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1452.6 983 72.6
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1446.4 982 71.4
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1445.6 980 73.3
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1445.3 985 71.9
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1445.3 980 73.2
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1445.3 984 71.5
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1444.1 984 71.6
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1444.1 984 71.7
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1443.7 984 71.5
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1442.9 1007 70.7
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1441.4 982 71.0
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1441.0 982 71.4
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1440.6 986 70.6
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1440.2 982 70.9
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1439.5 985 71.4
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1439.5 985 72.0
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1439.1 985 71.5
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1437.2 982 70.7
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1436.8 982 71.7
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1436.0 985 71.7
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1431.8 983 71.9
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1429.1 980 72.7
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1428.7 982 70.3
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1426.0 1004 71.3
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1424.5 984 70.6
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1418.7 985 69.6
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1414.4 982 70.0
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1413.7 984 69.6
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1411.4 984 69.5
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1406.3 984 69.6
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1406.0 984 69.6
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1405.6 985 69.4
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1402.9 983 69.4
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1402.9 982 68.8
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1402.1 982 69.7
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1401.7 992 71.3
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1401.0 1081 65.7
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1399.4 984 68.9
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1399.0 983 69.2
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1396.3 982 69.0
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1393.3 984 69.4
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1392.9 982 68.2
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1392.1 984 69.1
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1391.7 997 68.5
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1390.2 982 67.9
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1388.6 992 71.1
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1387.5 985 69.1
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1385.5 982 68.6
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1385.5 982 67.8
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1385.2 985 67.6
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1384.0 985 68.9
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1381.3 953 70.0
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1380.2 1004 67.7
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1379.4 989 69.1
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1376.7 984 69.0
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1370.1 982 67.7
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1369.8 983 68.1
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1368.2 1011 67.3
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1368.2 984 67.3
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1367.8 985 68.7
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1366.3 1079 63.0
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1365.9 984 67.2
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1364.4 990 67.4
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1363.6 986 66.7
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1363.2 984 67.0
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1354.0 900 74.0
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1350.9 1015 65.7
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1349.7 990 65.9
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1347.8 984 67.3
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1346.6 984 67.3
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1341.3 977 67.2
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1339.7 951 68.0
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1334.7 999 66.2
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1304.3 984 65.4
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1298.9 966 67.1
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1288.9 989 64.2
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1284.2 981 64.1
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1280.0 984 64.8
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1273.8 964 64.7
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1265.4 982 64.6
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1259.6 897 67.9
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1258.0 1013 62.8
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1230.3 845 70.7
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1186.8 846 67.1
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1171.4 951 61.7
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1143.3 881 63.0
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 0.0e+00 1085.5 808 64.9
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 2.3e-294 1015.8 976 54.1
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 1.5e-293 1013.1 978 52.9
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 2.6e-282 975.7 659 72.5
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.2e-259 899.0 539 80.3
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.5e-258 895.6 690 62.5
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 5.0e-257 891.7 953 48.9
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 1.1e-243 847.4 658 64.0
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 3.6e-215 752.7 889 44.3
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.8e-207 726.5 528 68.0
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.6e-194 684.1 810 48.9
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.3e-180 637.9 361 86.4
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 2.6e-173 613.6 916 41.7
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.7e-159 567.8 421 67.2
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 2.2e-143 514.2 294 87.4
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 3.0e-140 503.8 294 84.0
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 4.1e-134 483.4 334 72.8
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 7.8e-133 479.2 848 34.7
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 3.9e-132 476.9 280 83.6
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 4.9e-119 433.3 255 82.4
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 1.9e-115 421.4 1053 30.4
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 2.0e-112 411.4 664 41.7
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 2.6e-104 384.4 1024 31.2
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.2e-93 349.0 319 56.1
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 1.0e-92 345.9 380 47.1
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.5e-83 315.5 257 62.3
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 2.6e-80 304.7 427 41.0
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 3.4e-80 304.3 362 48.1
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.2e-71 275.0 251 57.0
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 8.5e-63 246.5 145 91.0
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 1.1e-54 219.5 141 74.5
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 7.2e-54 216.9 182 58.2
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 1.5e-51 209.1 127 78.7
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 2.2e-50 205.3 123 80.5
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 5.0e-47 194.1 108 86.1
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 2.1e-45 188.7 123 76.4
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 2.8e-42 178.3 1034 22.3
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 2.7e-40 171.8 104 76.0
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 5.9e-40 170.6 104 76.0
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 5.9e-40 170.6 104 76.0
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 1.7e-39 169.1 200 54.0
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 3.3e-30 138.3 83 81.9
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 3.7e-26 124.8 333 30.6
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 3.0e-23 115.2 82 65.9
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 1.2e-21 109.8 121 55.4
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 1.2e-21 109.8 121 55.4
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 8.0e-21 107.1 72 77.8
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 1.2e-19 103.2 82 58.5
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 5.8e-19 100.9 62 74.2
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 1.3e-18 99.8 186 33.9
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 2.2e-18 99.0 63 76.2
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 4.9e-18 97.8 60 76.7
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 1.4e-17 96.3 70 65.7
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.7e-16 92.0 60 73.3
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 3.5e-16 91.7 53 75.5
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.0e-15 90.1 60 71.7
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 1.1e-14 86.7 137 39.4
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 2.5e-14 85.5 45 82.2
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 2.3e-07 62.4 37 78.4
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 1.1e-06 60.1 115 32.2
Psat0s4854g0040 Pisum sativum HOM05D001108 ORTHO05D001619 3.3e-06 58.5 115 32.2


User provided reference genes

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