Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 6.9e-242 840.1 396 100.0
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 3.3e-215 751.5 396 86.9
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 4.9e-211 737.6 397 86.9
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 3.8e-208 728.0 397 84.4
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.5e-207 723.4 397 84.4
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.2e-204 716.5 393 81.7
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 4.4e-204 714.5 398 82.9
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 4.4e-204 714.5 392 81.9
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 7.5e-204 713.8 391 82.6
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.0e-201 705.7 397 81.6
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 4.6e-201 704.5 392 80.9
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.0e-200 703.4 395 81.0
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 1.0e-200 703.4 392 80.6
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.3e-200 702.2 392 82.4
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 3.9e-200 701.4 393 79.9
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 5.0e-200 701.0 391 80.1
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 5.0e-200 701.0 397 80.6
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 8.6e-200 700.3 392 80.4
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 8.6e-200 700.3 400 80.8
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 8.6e-200 700.3 395 82.0
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 3.3e-199 698.4 401 79.6
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 4.3e-199 698.0 390 82.3
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 4.3e-199 698.0 403 81.9
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 1.6e-198 696.0 394 81.7
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 1.6e-198 696.0 395 81.3
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 2.1e-198 695.7 393 78.9
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 3.6e-198 694.9 389 81.2
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 6.2e-198 694.1 400 81.0
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 6.2e-198 694.1 401 78.8
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 6.2e-198 694.1 387 80.9
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 8.0e-198 693.7 393 79.9
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 1.1e-197 693.3 393 80.2
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 1.4e-197 693.0 397 78.6
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 1.8e-197 692.6 399 80.5
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.8e-197 692.6 395 79.7
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.8e-197 692.6 393 80.4
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.8e-197 692.6 395 81.3
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 4.0e-197 691.4 379 83.4
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 5.2e-197 691.0 393 80.7
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 1.2e-196 689.9 394 80.5
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 1.5e-196 689.5 402 80.6
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 2.6e-196 688.7 399 79.2
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 2.6e-196 688.7 394 80.2
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 2.6e-196 688.7 385 81.8
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.4e-196 688.3 400 80.2
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 5.8e-196 687.6 394 80.7
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 7.5e-196 687.2 386 81.9
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 7.5e-196 687.2 400 79.8
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 7.5e-196 687.2 397 79.8
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 7.5e-196 687.2 396 80.3
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 9.8e-196 686.8 397 79.8
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.3e-195 686.4 387 81.4
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 1.7e-195 686.0 395 80.5
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 2.2e-195 685.6 392 79.3
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 2.2e-195 685.6 400 80.0
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.9e-195 685.3 397 79.8
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 3.7e-195 684.9 399 78.4
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 3.7e-195 684.9 376 82.7
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 3.7e-195 684.9 393 79.9
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 3.7e-195 684.9 399 78.7
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 4.9e-195 684.5 395 78.7
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 8.3e-195 683.7 397 77.8
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 8.3e-195 683.7 393 79.1
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.4e-194 682.9 379 82.3
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 2.4e-194 682.2 399 78.4
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 3.2e-194 681.8 382 81.7
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 5.4e-194 681.0 397 80.9
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 9.2e-194 680.2 376 82.4
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 9.2e-194 680.2 399 79.7
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 9.2e-194 680.2 399 77.7
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 2.0e-193 679.1 379 82.1
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 2.0e-193 679.1 399 78.4
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 2.7e-193 678.7 399 77.9
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 2.7e-193 678.7 379 81.8
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 4.6e-193 677.9 397 78.1
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 4.6e-193 677.9 376 81.9
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 1.0e-192 676.8 399 78.7
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.0e-192 676.8 394 78.9
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 1.7e-192 676.0 395 79.7
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 6.6e-192 674.1 386 80.6
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 8.6e-192 673.7 395 78.7
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 1.1e-191 673.3 396 78.8
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 1.5e-191 672.9 388 79.6
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 2.5e-191 672.2 400 77.8
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 4.3e-191 671.4 392 77.8
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 4.3e-191 671.4 393 78.9
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 7.3e-191 670.6 366 82.0
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 1.2e-190 669.8 400 78.0
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 1.2e-190 669.8 400 78.0
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 1.6e-190 669.5 366 82.0
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 1.6e-190 669.5 375 81.3
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 2.1e-190 669.1 387 79.3
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.1e-190 669.1 409 76.8
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 2.1e-190 669.1 392 79.3
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 2.8e-190 668.7 400 77.2
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 2.8e-190 668.7 400 77.0
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 2.8e-190 668.7 390 77.4
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 4.7e-190 667.9 390 78.7
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 2.3e-189 665.6 376 81.6
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 3.1e-189 665.2 388 79.4
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 8.9e-189 663.7 361 82.0
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 8.9e-189 663.7 463 68.0
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 5.8e-188 661.0 379 78.6
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 7.5e-188 660.6 400 77.2
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 7.5e-188 660.6 387 77.8
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 9.9e-188 660.2 388 78.6
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.4e-186 655.6 395 76.7
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 1.1e-183 646.7 431 71.2
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 2.5e-183 645.6 384 75.8
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.6e-182 642.9 390 75.9
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 4.0e-181 638.3 393 73.3
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 5.8e-180 634.4 399 72.7
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.3e-179 633.3 386 78.2
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 2.1e-177 625.9 322 87.3
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 8.7e-176 620.5 349 82.8
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 8.7e-176 620.5 375 74.9
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 2.5e-175 619.0 380 75.8
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 3.3e-175 618.6 389 73.0
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 1.5e-172 609.8 322 85.7
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 1.3e-166 590.1 391 70.8
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 4.2e-162 575.1 377 70.6
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 3.9e-160 568.5 333 76.3
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 7.4e-159 564.3 289 86.9
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.8e-158 562.4 289 86.9
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.4e-157 560.1 289 86.9
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 6.2e-150 534.6 286 82.9
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 2.1e-145 519.6 302 80.5
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.9e-143 513.1 270 86.3
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 9.7e-143 510.8 334 66.8
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.0e-141 504.2 352 70.5
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 2.9e-123 446.0 354 54.8
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 4.2e-122 442.2 285 68.8
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 9.4e-122 441.0 257 79.0
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 1.6e-121 440.3 258 79.5
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.7e-119 431.8 259 78.0
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.3e-110 404.1 376 49.5
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.6e-97 360.5 318 52.5
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.8e-94 349.7 210 78.1
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.5e-90 336.7 338 47.6
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 5.4e-69 265.8 137 85.4
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 5.6e-66 255.8 179 69.3
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 4.4e-55 219.5 119 81.5
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.2e-54 217.2 109 89.0
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 9.3e-53 211.8 124 77.4
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 4.8e-49 199.5 127 74.0
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.8e-48 197.6 137 65.0
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 4.8e-33 146.4 85 78.8
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.4e-32 144.8 85 77.6
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 2.1e-28 131.0 80 71.2
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 3.3e-26 123.6 101 58.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 2.9e-14 84.0 52 73.1
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 1.3e-06 58.5 71 42.3


User provided reference genes

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