Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 4.1e-113 411.4 206 100.0
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 1.8e-100 369.4 206 88.8
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 8.4e-98 360.5 205 85.4
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 5.4e-97 357.8 206 84.5
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 9.3e-97 357.1 205 84.9
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 2.1e-96 355.9 205 83.9
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 2.7e-96 355.5 205 85.9
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 5.1e-95 351.3 205 84.9
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 5.1e-95 351.3 205 83.4
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 8.7e-95 350.5 205 84.9
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.1e-94 350.1 205 82.4
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.9e-94 349.4 205 84.4
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 2.5e-94 349.0 205 84.4
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 2.5e-94 349.0 205 82.9
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 2.5e-94 349.0 205 83.4
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 4.3e-94 348.2 205 82.9
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 4.3e-94 348.2 205 82.9
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 5.6e-94 347.8 205 84.4
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 1.6e-93 346.3 205 82.0
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 2.8e-93 345.5 205 80.0
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 4.8e-93 344.7 205 82.4
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 4.8e-93 344.7 205 82.0
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.4e-92 343.2 205 80.0
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 1.8e-92 342.8 205 80.5
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 3.1e-92 342.0 205 81.5
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 5.3e-92 341.3 205 80.5
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 6.9e-92 340.9 205 80.0
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 6.9e-92 340.9 205 79.5
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 9.0e-92 340.5 205 79.5
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 1.2e-91 340.1 205 79.5
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 2.0e-91 339.3 205 80.5
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 3.4e-91 338.6 205 78.5
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 4.5e-91 338.2 205 80.5
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 9.9e-91 337.0 209 81.8
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 9.9e-91 337.0 205 79.0
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 9.9e-91 337.0 205 79.0
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 1.3e-90 336.7 205 79.5
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 1.3e-90 336.7 205 77.6
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 1.3e-90 336.7 205 79.5
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 1.3e-90 336.7 205 78.5
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 1.7e-90 336.3 205 79.0
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 1.7e-90 336.3 205 79.5
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 2.9e-90 335.5 205 78.5
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 3.8e-90 335.1 205 77.1
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 4.9e-90 334.7 205 78.0
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 4.9e-90 334.7 205 76.1
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 4.9e-90 334.7 205 78.5
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 6.4e-90 334.3 205 78.0
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 8.4e-90 334.0 205 78.0
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 8.4e-90 334.0 205 78.0
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 1.1e-89 333.6 205 76.1
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 1.4e-89 333.2 205 78.0
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 1.9e-89 332.8 205 77.6
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.4e-89 332.4 205 77.6
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.4e-89 332.4 205 77.6
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 3.2e-89 332.0 205 76.6
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 4.2e-89 331.6 205 79.0
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 4.2e-89 331.6 205 77.6
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 2.1e-88 329.3 205 78.0
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 2.7e-88 328.9 205 76.1
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 4.6e-88 328.2 205 77.6
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 4.6e-88 328.2 203 78.8
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 7.9e-88 327.4 205 79.0
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 1.0e-87 327.0 206 77.2
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 1.3e-87 326.6 205 77.1
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 3.0e-87 325.5 205 77.1
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 3.0e-87 325.5 205 77.1
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 3.9e-87 325.1 205 76.1
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 6.7e-87 324.3 205 76.6
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 8.7e-87 323.9 205 75.6
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 8.7e-87 323.9 205 76.6
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 1.1e-86 323.6 205 75.6
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.1e-86 323.6 226 69.9
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 1.5e-86 323.2 205 77.1
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 1.9e-86 322.8 205 76.6
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 1.9e-86 322.8 205 75.1
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 2.5e-86 322.4 205 76.1
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 2.5e-86 322.4 205 76.6
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 2.5e-86 322.4 216 74.1
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 7.4e-86 320.9 210 74.8
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.6e-85 319.7 208 76.0
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 1.6e-85 319.7 211 74.4
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 2.8e-85 318.9 205 76.1
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 3.7e-85 318.5 205 75.1
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 3.7e-85 318.5 205 74.6
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 1.4e-84 316.6 205 76.6
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 6.9e-84 314.3 205 74.6
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 7.6e-83 310.8 186 79.6
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 4.9e-82 308.1 205 76.1
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 1.4e-81 306.6 205 74.1
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 2.5e-81 305.8 205 77.6
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 3.5e-80 302.0 203 69.5
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 4.3e-78 295.0 214 67.3
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 1.3e-77 293.5 203 67.5
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 4.1e-76 288.5 166 83.1
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 7.6e-75 284.3 178 78.7
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 2.9e-74 282.3 203 67.0
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 2.9e-74 282.3 207 65.2
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 2.1e-72 276.2 166 80.7
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 2.7e-72 275.8 169 75.7
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 3.6e-72 275.4 186 74.2
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 4.6e-72 275.0 203 65.5
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 6.1e-72 274.6 205 67.3
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 3.0e-71 272.3 203 65.0
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 2.5e-65 252.7 249 55.4
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 1.6e-64 250.0 163 75.5
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 6.7e-63 244.6 157 74.5
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 6.3e-61 238.0 157 74.5
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 1.7e-58 229.9 189 61.4
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 7.9e-56 221.1 211 53.6
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 1.1e-52 210.7 133 73.7
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 1.0e-50 204.1 182 55.5
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.5e-49 200.3 208 51.0
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 1.4e-47 193.7 153 63.4
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 1.3e-45 187.2 142 67.6
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 3.7e-45 185.7 123 74.0
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 3.7e-45 185.7 123 74.0
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 1.6e-43 180.3 210 51.0
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 8.3e-37 157.9 223 39.5
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 8.3e-37 157.9 223 39.5
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 1.4e-36 157.1 95 77.9
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 3.3e-25 119.4 194 37.1
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 2.2e-21 106.7 102 52.9
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 3.2e-20 102.8 86 59.3
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.2e-20 102.8 65 70.8
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 7.3e-17 91.7 53 83.0
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 7.3e-17 91.7 52 84.6
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 1.2e-16 90.9 53 84.9
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 1.4e-15 87.4 73 60.3
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 3.4e-14 82.8 44 88.6
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 4.4e-14 82.4 57 66.7
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 5.4e-12 75.5 135 42.2
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 4.6e-11 72.4 38 89.5
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 1.5e-09 67.4 46 67.4
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 8.1e-08 61.6 38 78.9
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 1.8e-07 60.5 39 82.1
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 4.0e-07 59.3 34 82.4
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 9.9e-06 54.7 36 63.9


User provided reference genes

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