Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11643 Nelumbo nucifera HOM05D000401 ORTHO05D000252 6.8e-45 183.7 99 100.0
Nn2g10338 Nelumbo nucifera HOM05D000401 ORTHO05D000252 7.0e-42 173.7 99 94.9
Nn5g26877 Nelumbo nucifera HOM05D000401 ORTHO05D000252 4.4e-28 127.9 99 75.8
Aqoxy4G02374 Aquilegia oxysepala HOM05D000401 ORTHO05D000252 3.3e-23 111.7 98 63.3
Thecc.09G362400 Theobroma cacao HOM05D000401 ORTHO05D000252 9.5e-23 110.2 98 62.2
MBI03_g02746_MAGBIO Magnolia biondii HOM05D000401 ORTHO05D000252 1.2e-20 103.2 97 64.9
Potri.016G134200 Populus trichocarpa HOM05D000401 ORTHO05D000252 2.0e-20 102.4 101 61.4
Manes.08G173700 Manihot esculenta HOM05D000401 ORTHO05D000252 4.4e-20 101.3 98 63.3
Potri.006G107700 Populus trichocarpa HOM05D000401 ORTHO05D000252 5.8e-20 100.9 99 65.7
TAR633G0869 Trochodendron aralioides HOM05D000401 ORTHO05D000252 5.8e-20 100.9 91 68.1
CiPaw.10G164400 Carya illinoinensis HOM05D000401 ORTHO05D000252 4.9e-19 97.8 98 59.2
COL.COLO4_16554 Corchorus olitorius HOM05D000401 ORTHO05D000252 6.4e-19 97.4 100 62.0
Sabra04G0151800 Salix brachista HOM05D000401 ORTHO05D000252 6.4e-19 97.4 101 60.4
Sabra19G0126100 Salix brachista HOM05D000401 ORTHO05D000252 6.4e-19 97.4 98 59.2
QL07p032580 Quercus lobata HOM05D000401 ORTHO05D000252 8.3e-19 97.1 99 66.7
Manes.09G116400 Manihot esculenta HOM05D000401 ORTHO05D000252 3.2e-18 95.1 98 61.2
Sabra06G0083800 Salix brachista HOM05D000401 ORTHO05D000252 3.2e-18 95.1 101 61.4
Thecc.04G154200 Theobroma cacao HOM05D000401 ORTHO05D000252 4.1e-18 94.7 98 60.2
Sabra13G0125000 Salix brachista HOM05D000401 ORTHO05D000252 7.0e-18 94.0 98 56.1
COL.COLO4_11197 Corchorus olitorius HOM05D000401 ORTHO05D000252 9.2e-18 93.6 90 62.2
TAR369G0195 Trochodendron aralioides HOM05D000401 ORTHO05D000252 9.2e-18 93.6 98 59.2
Potri.013G155200 Populus trichocarpa HOM05D000401 ORTHO05D000252 1.2e-17 93.2 99 55.6
Potri.019G128500 Populus trichocarpa HOM05D000401 ORTHO05D000252 1.6e-17 92.8 98 56.1
Duzib268G1597 Durio zibethinus HOM05D000401 ORTHO05D000252 2.7e-17 92.0 98 58.2
Glyma.11G159800 Glycine max HOM05D000401 ORTHO05D000252 2.7e-17 92.0 98 52.0
CiPaw.13G065000 Carya illinoinensis HOM05D000401 ORTHO05D000252 3.5e-17 91.7 98 55.1
Duzib212G0735 Durio zibethinus HOM05D000401 ORTHO05D000252 6.0e-17 90.9 98 58.2
Atru.chr1.2520 Acer truncatum HOM05D000401 ORTHO05D000252 7.8e-17 90.5 91 54.9
Duzib151G0166 Durio zibethinus HOM05D000401 ORTHO05D000252 7.8e-17 90.5 98 57.1
Glyma.18G054200 Glycine max HOM05D000401 ORTHO05D000252 1.0e-16 90.1 98 53.1
Phvul.006G077000 Phaseolus vulgaris HOM05D000401 ORTHO05D000252 1.3e-16 89.7 98 52.0
Hma1.2p1_1637F.1_g294920 Hydrangea macrophylla HOM05D000401 ORTHO05D000252 1.7e-16 89.4 99 52.5
Cfa017057 Carpinus fangiana HOM05D000401 ORTHO05D000252 5.0e-16 87.8 98 57.1
Dinv11382 Davidia involucrata HOM05D000401 ORTHO05D000252 5.0e-16 87.8 98 58.2
Ciclev10011867m.g Citrus clementina HOM05D000401 ORTHO05D000252 6.6e-16 87.4 101 57.4
Prupe.6G290900 Prunus persica HOM05D000401 ORTHO05D000252 6.6e-16 87.4 104 55.8
Ciclev10003798m.g Citrus clementina HOM05D000401 ORTHO05D000252 1.5e-15 86.3 101 54.5
Haze_21156 Corylus avellana HOM05D000401 ORTHO05D000252 1.5e-15 86.3 98 57.1
Peaxi162Scf00239g00023 Petunia axillaris HOM05D000401 ORTHO05D000252 1.5e-15 86.3 90 55.6
Cc01_g15220 Coffea canephora HOM05D000401 ORTHO05D000252 2.5e-15 85.5 95 51.6
CiPaw.09G219200 Carya illinoinensis HOM05D000401 ORTHO05D000252 3.3e-15 85.1 100 58.0
QL01p025102 Quercus lobata HOM05D000401 ORTHO05D000252 4.3e-15 84.7 85 55.3
Dinv11380 Davidia involucrata HOM05D000401 ORTHO05D000252 5.6e-15 84.3 98 56.1
VMungo0540G1589 Vigna mungo HOM05D000401 ORTHO05D000252 5.6e-15 84.3 98 49.0
MD11G1055200 Malus domestica HOM05D000401 ORTHO05D000252 3.6e-14 81.6 102 50.0
MD03G1053600 Malus domestica HOM05D000401 ORTHO05D000252 4.7e-14 81.3 104 50.0
Phvul.010G067800 Phaseolus vulgaris HOM05D000401 ORTHO05D000252 1.1e-13 80.1 87 62.1
VMungo1383G3319 Vigna mungo HOM05D000401 ORTHO05D000252 1.1e-13 80.1 76 60.5
VMungo0331G2036 Vigna mungo HOM05D000401 ORTHO05D000252 1.4e-13 79.7 87 63.2
Hma1.2p1_0119F.1_g056880 Hydrangea macrophylla HOM05D000401 ORTHO05D000252 1.8e-13 79.3 102 53.9
RcHm_v2.0_Chr5g0072651 Rosa chinensis HOM05D000401 ORTHO05D000252 1.8e-13 79.3 102 52.0
Cfa011818 Carpinus fangiana HOM05D000401 ORTHO05D000252 3.1e-13 78.6 96 53.1
CiPaw.14G051600 Carya illinoinensis HOM05D000401 ORTHO05D000252 3.1e-13 78.6 99 49.5
Glyma.18G215300 Glycine max HOM05D000401 ORTHO05D000252 3.1e-13 78.6 86 58.1
Rhsim13G0060700 Rhododendron simsii HOM05D000401 ORTHO05D000252 3.1e-13 78.6 85 54.1
TWI74G1058 Tripterygium wilfordii HOM05D000401 ORTHO05D000252 3.1e-13 78.6 74 60.8
Prupe.6G042700 Prunus persica HOM05D000401 ORTHO05D000252 4.0e-13 78.2 105 49.5
Lj1g0008429 Lotus japonicus HOM05D000401 ORTHO05D000252 6.8e-13 77.4 105 48.6
Dinv25323 Davidia involucrata HOM05D000215 ORTHO05D002239 1.2e-12 76.6 97 54.6
FAN16G0556 Fragaria x ananassa HOM05D000401 ORTHO05D000252 1.2e-12 76.6 103 52.4
Phvul.008G084900 Phaseolus vulgaris HOM05D000401 ORTHO05D000252 1.2e-12 76.6 94 52.1
TPR.G26924 Trifolium pratense HOM05D000401 ORTHO05D000252 1.2e-12 76.6 101 51.5
Glyma.09G276400 Glycine max HOM05D000401 ORTHO05D000252 2.0e-12 75.9 86 55.8
Dinv04838 Davidia involucrata HOM05D000401 ORTHO05D000252 2.6e-12 75.5 96 52.1
Dinv12271 Davidia involucrata HOM05D000401 ORTHO05D000252 2.6e-12 75.5 96 52.1
Glyma.02G235600 Glycine max HOM05D000401 ORTHO05D000252 2.6e-12 75.5 98 43.9
GSVIVG01030204001 Vitis vinifera HOM05D000401 ORTHO05D000252 2.6e-12 75.5 53 79.2
Lalb_Chr07g0190501 Lupinus albus HOM05D000401 ORTHO05D000252 3.4e-12 75.1 94 51.1
FvH4_3g40310 Fragaria vesca HOM05D000401 ORTHO05D000252 4.4e-12 74.7 101 49.5
FvH4_6g10140 Fragaria vesca HOM05D000401 ORTHO05D000252 4.4e-12 74.7 74 62.2
FAN02G1305 Fragaria x ananassa HOM05D000401 ORTHO05D000252 4.4e-12 74.7 74 62.2
FAN05G0957 Fragaria x ananassa HOM05D000401 ORTHO05D000252 4.4e-12 74.7 74 62.2
FAN05G5672 Fragaria x ananassa HOM05D000401 ORTHO05D000252 4.4e-12 74.7 74 62.2
FAN09G3930 Fragaria x ananassa HOM05D000401 ORTHO05D000252 4.4e-12 74.7 74 62.2
FAN11G1304 Fragaria x ananassa HOM05D000401 ORTHO05D000252 4.4e-12 74.7 103 51.5
FAN14G3433 Fragaria x ananassa HOM05D000401 ORTHO05D000252 4.4e-12 74.7 74 62.2
FAN21G2616 Fragaria x ananassa HOM05D000401 ORTHO05D000252 4.4e-12 74.7 103 51.5
FAN25G0123 Fragaria x ananassa HOM05D000401 ORTHO05D000252 4.4e-12 74.7 101 49.5
Manes.18G139400 Manihot esculenta HOM05D000401 ORTHO05D000252 4.4e-12 74.7 100 54.0
RcHm_v2.0_Chr3g0460841 Rosa chinensis HOM05D000401 ORTHO05D000252 4.4e-12 74.7 74 62.2
Glyma.01G131900 Glycine max HOM05D000401 ORTHO05D000252 5.8e-12 74.3 86 58.1
Lj6g0003199 Lotus japonicus HOM05D000401 ORTHO05D000252 5.8e-12 74.3 98 48.0
Medtr7g072630 Medicago truncatula HOM05D000401 ORTHO05D000252 5.8e-12 74.3 80 57.5
Medtr7g072875 Medicago truncatula HOM05D000401 ORTHO05D000252 5.8e-12 74.3 80 57.5
Ca_07753_v3 Cicer arietinum L. HOM05D000401 ORTHO05D000252 9.9e-12 73.6 87 54.0
TWI77G0627 Tripterygium wilfordii HOM05D000401 ORTHO05D000252 9.9e-12 73.6 94 51.1
Actinidia29044 Actinidia chinensis HOM05D000401 ORTHO05D000252 1.7e-11 72.8 96 56.2
CSS0002009 Camellia sinensis var. sinensis HOM05D000401 ORTHO05D000252 1.7e-11 72.8 81 59.3
CSS0031257 Camellia sinensis var. sinensis HOM05D000401 ORTHO05D000252 1.7e-11 72.8 81 59.3
TWI79G0773 Tripterygium wilfordii HOM05D000401 ORTHO05D000252 1.7e-11 72.8 97 50.5
Actinidia11519 Actinidia chinensis HOM05D000401 ORTHO05D000252 2.2e-11 72.4 94 55.3
Gohir.D13G241300 Gossypium hirsutum HOM05D000401 ORTHO05D000252 2.2e-11 72.4 70 62.9
Migut.J00058 Erythranthe guttata HOM05D000401 ORTHO05D000252 2.9e-11 72.0 101 49.5
Glyma.03G036600 Glycine max HOM05D000401 ORTHO05D000252 2.9e-11 72.0 102 53.9
Gorai.013G272200 Gossypium raimondii HOM05D000401 ORTHO05D000252 2.9e-11 72.0 70 62.9
Phvul.008G248300 Phaseolus vulgaris HOM05D000401 ORTHO05D000252 2.9e-11 72.0 98 44.9
Lalb_Chr04g0251791 Lupinus albus HOM05D000401 ORTHO05D000252 3.7e-11 71.6 98 43.9
Haze_24454 Corylus avellana HOM05D000401 ORTHO05D000252 4.9e-11 71.2 76 55.3
Oeu057994.1 Olea europaea HOM05D000401 ORTHO05D000252 4.9e-11 71.2 99 51.5
vmacro02887 Vaccinium macrocarpon HOM05D000401 ORTHO05D000252 6.4e-11 70.9 85 48.2
Psat3g120480 Pisum sativum HOM05D000401 ORTHO05D000252 8.3e-11 70.5 99 50.5
VMungo0647G0200 Vigna mungo HOM05D000401 ORTHO05D000252 1.1e-10 70.1 98 43.9
Lj2A61G32 Lonicera japonica HOM05D000401 ORTHO05D000252 1.4e-10 69.7 96 51.0
MSTRG.5512 Avicennia marina HOM05D000401 ORTHO05D000252 2.4e-10 68.9 106 50.0
Rhsim05G0229400 Rhododendron simsii HOM05D000401 ORTHO05D000252 2.4e-10 68.9 57 70.2
CANSAT54G0863 Cannabis sativa HOM05D000401 ORTHO05D000252 3.2e-10 68.6 60 70.0
Lalb_Chr12g0207621 Lupinus albus HOM05D000401 ORTHO05D000252 3.2e-10 68.6 99 48.5
Lalb_Chr17g0345601 Lupinus albus HOM05D000401 ORTHO05D000252 4.1e-10 68.2 99 43.4
MD12G1185700 Malus domestica HOM05D000401 ORTHO05D000252 5.4e-10 67.8 91 53.8
Gohir.A09G213646 Gossypium hirsutum HOM05D000401 ORTHO05D000252 7.1e-10 67.4 88 56.8
Gohir.A10G149600 Gossypium hirsutum HOM05D000401 ORTHO05D000252 9.2e-10 67.0 96 49.0
Lj2A1100T23 Lonicera japonica HOM05D000401 ORTHO05D000252 9.2e-10 67.0 83 48.2
Gohir.D02G004600 Gossypium hirsutum HOM05D000401 ORTHO05D000252 1.2e-09 66.6 56 64.3
Gorai.005G005200 Gossypium raimondii HOM05D000401 ORTHO05D000252 1.2e-09 66.6 56 64.3
MSTRG.18952 Avicennia marina HOM05D000401 ORTHO05D000252 1.6e-09 66.2 107 49.5
Gorai.006G234600 Gossypium raimondii HOM05D000401 ORTHO05D000252 1.6e-09 66.2 88 56.8
PSO339G2968 Papaver somniferum HOM05D000401 ORTHO05D000252 2.1e-09 65.9 113 46.0
Gorai.011G129100 Gossypium raimondii HOM05D000401 ORTHO05D000252 2.7e-09 65.5 96 49.0
Glyma.14G203600 Glycine max HOM05D000401 ORTHO05D000252 3.5e-09 65.1 98 42.9
Gohir.A13G235600 Gossypium hirsutum HOM05D000401 ORTHO05D000252 3.5e-09 65.1 70 58.6
Gohir.D09G214200 Gossypium hirsutum HOM05D000401 ORTHO05D000252 3.5e-09 65.1 88 55.7
Gohir.D10G117200 Gossypium hirsutum HOM05D000401 ORTHO05D000252 3.5e-09 65.1 96 49.0
Ca_05701_v3 Cicer arietinum L. HOM05D000401 ORTHO05D000252 4.6e-09 64.7 104 43.3
Ca_30027_v3 Cicer arietinum L. HOM05D000401 ORTHO05D000252 4.6e-09 64.7 104 43.3
MD04G1172500 Malus domestica HOM05D000401 ORTHO05D000252 4.6e-09 64.7 88 55.7
PSO384G4888 Papaver somniferum HOM05D000401 ORTHO05D000252 4.6e-09 64.7 116 44.8
Gohir.A02G004200 Gossypium hirsutum HOM05D000401 ORTHO05D000252 6.0e-09 64.3 56 60.7
TAR623G1774 Trochodendron aralioides HOM05D000401 ORTHO05D000252 6.0e-09 64.3 98 46.9
Actinidia23175 Actinidia chinensis HOM05D000401 ORTHO05D000252 7.8e-09 63.9 92 48.9
DCAR_015345 Daucus carota HOM05D000401 ORTHO05D000252 1.3e-08 63.2 99 46.5
Oeu064871.1 Olea europaea HOM05D000401 ORTHO05D000252 1.7e-08 62.8 98 49.0
GSVIVG01024579001 Vitis vinifera HOM05D000401 ORTHO05D000252 1.7e-08 62.8 88 43.2
Psat7g228320 Pisum sativum HOM05D000401 ORTHO05D000252 2.3e-08 62.4 101 45.5
vmacro20359 Vaccinium macrocarpon HOM05D000401 ORTHO05D000252 2.3e-08 62.4 57 64.9
Lj3g0000913 Lotus japonicus HOM05D000401 ORTHO05D000252 3.9e-08 61.6 104 43.3
LjContig00141g0026474 Lotus japonicus HOM05D000401 ORTHO05D000252 3.9e-08 61.6 93 40.9
Ah.08g209650 Amaranthus hybridus HOM05D000401 ORTHO05D000252 5.1e-08 61.2 88 48.9
Nitab4.5_0003003g0050 Nicotiana tabacum HOM05D000401 ORTHO05D000252 6.6e-08 60.8 99 47.5
Peaxi162Scf00732g00046 Petunia axillaris HOM05D000401 ORTHO05D000252 6.6e-08 60.8 96 47.9
CDE06G1575 Ceratophyllum demersum HOM05D000401 ORTHO05D000252 8.6e-08 60.5 57 59.6
AUR62006367 Chenopodium quinoa HOM05D000401 ORTHO05D000252 8.6e-08 60.5 72 50.0
arahy.Tifrunner.gnm1.ann1.5D5CHZ Arachis hypogaea HOM05D000401 ORTHO05D000252 1.1e-07 60.1 63 52.4
arahy.Tifrunner.gnm1.ann1.PGK53K Arachis hypogaea HOM05D000401 ORTHO05D000252 1.9e-07 59.3 63 50.8
CDE07G0491 Ceratophyllum demersum HOM05D000401 ORTHO05D000252 1.9e-07 59.3 57 59.6
Medtr5g075210 Medicago truncatula HOM05D000401 ORTHO05D000252 3.3e-07 58.5 98 42.9
vmacro08927 Vaccinium macrocarpon HOM05D000401 ORTHO05D000252 3.3e-07 58.5 77 49.4
Lalb_Chr15g0085931 Lupinus albus HOM05D000401 ORTHO05D000252 4.3e-07 58.2 98 38.8
CSS0043168 Camellia sinensis var. sinensis HOM05D000401 ORTHO05D000252 5.6e-07 57.8 103 43.7
EL10Ac7g17069 Beta vulgaris HOM05D000401 ORTHO05D000252 1.6e-06 56.2 101 47.5
PSO017G3341 Papaver somniferum HOM05D000401 ORTHO05D000252 1.6e-06 56.2 121 34.7
Eucgr.B04023 Eucalyptus grandis HOM05D000401 ORTHO05D000252 2.8e-06 55.5 69 53.6
Rhsim04G0122500 Rhododendron simsii HOM05D000401 ORTHO05D000252 2.8e-06 55.5 86 44.2
TPR.G25743 Trifolium pratense HOM05D000401 ORTHO05D000252 3.6e-06 55.1 101 40.6
Medtr4g028930 Medicago truncatula HOM05D000401 ORTHO05D000252 4.7e-06 54.7 102 41.2
MELO3C025206.2 Cucumis melo HOM05D000401 ORTHO05D000252 6.2e-06 54.3 57 56.1
CsaV3_4G027080 Cucumis sativus L. HOM05D000401 ORTHO05D000252 6.2e-06 54.3 57 56.1
CAN.G345.10 Capsicum annuum HOM05D000401 ORTHO05D000252 8.1e-06 53.9 58 63.8
Oeu003244.1 Olea europaea HOM05D000401 ORTHO05D000252 8.1e-06 53.9 98 46.9
Oeu058243.1 Olea europaea HOM05D000401 ORTHO05D000252 8.1e-06 53.9 81 43.2


User provided reference genes

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