Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 3.0e-129 465.7 339 100.0
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.9e-94 350.1 312 87.8
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 3.3e-91 339.3 337 77.2
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 2.9e-87 326.2 337 72.7
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 3.2e-86 322.8 338 75.1
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 1.2e-85 320.9 317 73.8
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 1.8e-84 317.0 338 69.8
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 3.9e-84 315.8 338 78.7
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 1.5e-83 313.9 319 73.0
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 4.3e-83 312.4 337 70.0
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 9.6e-83 311.2 322 80.1
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 1.3e-82 310.8 311 81.7
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 2.8e-82 309.7 330 62.1
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 1.4e-81 307.4 339 69.9
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 1.4e-81 307.4 308 74.4
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 1.8e-81 307.0 312 68.6
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 1.8e-81 307.0 316 74.4
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 2.4e-81 306.6 329 68.7
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 5.3e-81 305.4 335 73.1
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 6.9e-81 305.1 337 76.6
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 6.9e-81 305.1 316 70.9
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 9.0e-81 304.7 337 74.5
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 1.2e-80 304.3 318 76.4
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 1.5e-80 303.9 317 69.4
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.5e-80 303.9 319 62.7
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 2.6e-80 303.1 314 72.6
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.4e-80 302.8 337 74.8
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 7.6e-80 301.6 314 78.3
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 7.6e-80 301.6 335 75.2
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 7.6e-80 301.6 317 75.7
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 7.6e-80 301.6 316 63.6
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 1.3e-79 300.8 316 79.1
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.2e-79 300.1 337 73.3
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 2.9e-79 299.7 316 78.8
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 2.9e-79 299.7 316 71.8
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 3.8e-79 299.3 330 77.0
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 3.8e-79 299.3 314 72.3
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 4.9e-79 298.9 317 77.3
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 6.4e-79 298.5 316 77.5
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 6.4e-79 298.5 317 78.9
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 8.4e-79 298.1 326 68.4
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 8.4e-79 298.1 330 74.5
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-78 297.7 314 77.4
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 1.1e-78 297.7 330 71.2
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.4e-78 297.4 340 67.1
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.4e-78 297.4 340 67.1
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-78 297.4 337 73.3
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-78 297.4 337 73.3
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.9e-78 297.0 316 70.6
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 2.5e-78 296.6 321 69.5
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 2.5e-78 296.6 316 70.9
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 7.1e-78 295.0 330 72.4
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 7.1e-78 295.0 326 73.6
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-77 294.3 317 75.7
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 1.2e-77 294.3 317 75.7
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 1.2e-77 294.3 321 69.2
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 1.6e-77 293.9 317 69.4
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 2.1e-77 293.5 316 77.8
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 2.1e-77 293.5 318 69.8
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 2.7e-77 293.1 321 69.2
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 2.7e-77 293.1 321 69.2
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 2.7e-77 293.1 321 69.2
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 3.5e-77 292.7 317 75.4
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 4.6e-77 292.4 315 77.8
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.0e-76 291.2 316 76.9
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 1.0e-76 291.2 334 74.9
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 3.0e-76 289.7 334 70.4
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 5.1e-76 288.9 333 74.2
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 6.7e-76 288.5 318 79.2
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 1.1e-75 287.7 327 73.7
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 1.1e-75 287.7 312 73.7
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 1.5e-75 287.3 316 69.0
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 1.5e-75 287.3 317 69.1
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 1.9e-75 287.0 301 72.4
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.9e-75 287.0 335 72.5
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 2.5e-75 286.6 323 64.7
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 2.5e-75 286.6 334 63.5
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 4.3e-75 285.8 323 67.8
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 5.6e-75 285.4 341 65.7
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 7.4e-75 285.0 308 77.3
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 1.6e-74 283.9 316 71.8
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 6.2e-74 282.0 332 73.5
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 8.2e-74 281.6 346 58.4
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 2.4e-73 280.0 316 68.7
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 5.3e-73 278.9 316 68.4
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 5.3e-73 278.9 329 63.2
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 6.9e-73 278.5 316 67.1
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 6.9e-73 278.5 317 77.0
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 9.0e-73 278.1 324 69.8
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 1.0e-71 274.6 316 61.4
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 1.0e-71 274.6 316 69.0
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 2.2e-71 273.5 311 76.8
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.1e-70 271.2 330 69.1
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.2e-70 269.6 312 75.3
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 3.2e-70 269.6 313 75.7
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 3.5e-69 266.2 293 72.4
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 4.6e-69 265.8 347 63.7
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 6.0e-69 265.4 307 75.2
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.0e-68 264.6 347 62.2
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 3.9e-68 262.7 315 60.0
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 3.9e-68 262.7 315 60.0
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 9.7e-67 258.1 297 68.0
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 2.8e-66 256.5 257 67.7
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 6.9e-65 251.9 313 72.8
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 5.9e-64 248.8 316 64.9
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 6.5e-63 245.4 237 66.7
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 1.4e-62 244.2 308 58.1
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 1.3e-58 231.1 323 64.4
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 3.7e-58 229.6 367 50.1
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 4.8e-58 229.2 218 78.4
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 4.8e-58 229.2 216 67.1
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.8e-58 229.2 314 58.9
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 5.3e-57 225.7 217 61.3
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 1.2e-56 224.6 330 53.9
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.5e-56 224.2 166 72.9
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 4.7e-53 212.6 316 55.4
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 3.9e-52 209.5 204 74.5
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-51 208.0 204 75.0
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 2.0e-51 207.2 312 56.7
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 1.3e-50 204.5 323 60.4
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 1.1e-49 201.4 285 61.4
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-49 201.1 174 59.2
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 3.1e-49 199.9 174 58.6
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 9.1e-49 198.4 294 62.2
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 3.8e-47 193.0 328 57.6
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 1.9e-46 190.7 307 64.5
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 2.5e-46 190.3 186 75.8
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 2.5e-46 190.3 174 64.4
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 3.2e-46 189.9 150 69.3
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 3.3e-43 179.9 212 87.7
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 4.4e-43 179.5 134 67.9
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 6.3e-42 175.6 307 49.8
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.4e-41 173.7 172 56.4
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 3.5e-40 169.9 185 58.9
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 1.0e-39 168.3 185 63.8
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 8.5e-39 165.2 218 51.8
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 8.5e-39 165.2 121 70.2
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 1.1e-38 164.9 316 49.1
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-38 164.5 150 58.0
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 6.1e-37 159.1 113 69.9
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 1.7e-34 151.0 321 54.5
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.7e-34 151.0 157 59.9
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 3.1e-33 146.7 152 61.2
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 9.1e-33 145.2 307 44.6
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 1.3e-31 141.4 152 53.9
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-30 137.9 158 61.4
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.9e-30 137.5 207 74.9
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 3.2e-30 136.7 152 69.7
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 2.1e-29 134.0 164 51.8
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 3.3e-22 110.2 144 46.5
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.6e-21 106.7 84 64.3
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-20 104.8 84 63.1
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-20 104.8 84 63.1
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 8.9e-20 102.1 181 69.1
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.3e-18 95.9 77 62.3
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.3e-15 88.2 96 52.1
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-14 85.1 77 57.1
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 2.5e-14 84.0 67 64.2
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 3.3e-14 83.6 94 51.1
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 1.2e-11 75.1 94 45.7
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 4.9e-10 69.7 100 43.0
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 3.2e-09 67.0 48 62.5
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 7.0e-09 65.9 107 40.2
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 2.0e-08 64.3 61 50.8
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.7e-08 63.9 62 53.2
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 3.5e-08 63.5 164 54.9


User provided reference genes

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