Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 0.0e+00 1214.5 630 100.0
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 1.0e-239 833.6 575 75.1
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.1e-222 776.9 566 70.5
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 1.5e-222 776.5 576 70.7
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 5.7e-222 774.6 576 70.3
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 4.5e-219 765.0 574 69.9
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 4.5e-219 765.0 571 69.4
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 2.9e-218 762.3 577 68.1
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 1.1e-217 760.4 589 68.6
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 1.8e-215 753.1 571 69.5
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 2.8e-213 745.7 577 68.5
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.8e-212 743.0 577 68.3
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 1.6e-211 740.0 575 65.7
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 2.9e-210 735.7 575 66.6
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 1.1e-209 733.8 571 67.8
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 5.5e-209 731.5 577 66.4
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 1.0e-207 727.2 577 66.6
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 3.0e-207 725.7 579 67.2
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 6.8e-207 724.5 575 64.9
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 7.5e-206 721.1 570 66.1
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 7.5e-206 721.1 576 66.3
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 3.7e-205 718.8 577 67.4
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 5.4e-204 714.9 573 65.4
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 5.9e-203 711.4 570 66.3
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 3.8e-202 708.8 575 63.8
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 8.6e-202 707.6 573 65.4
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.5e-201 706.8 574 64.8
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 7.2e-201 704.5 575 65.6
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.6e-200 702.2 575 63.5
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 1.4e-199 700.3 573 64.9
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.8e-199 699.9 580 64.1
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 4.0e-199 698.7 610 63.3
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 8.9e-199 697.6 573 64.6
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.2e-198 697.2 580 64.0
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 2.6e-198 696.0 572 64.5
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 4.4e-198 695.3 561 66.5
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.4e-198 695.3 577 64.1
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 1.7e-197 693.3 574 63.2
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.3e-197 691.0 580 63.8
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 8.3e-197 691.0 577 63.8
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 8.3e-197 691.0 569 64.1
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 3.2e-196 689.1 572 63.8
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 4.1e-196 688.7 530 68.3
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 4.1e-196 688.7 574 63.8
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 7.0e-196 688.0 576 63.2
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 9.2e-196 687.6 573 62.8
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 9.2e-196 687.6 514 69.5
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 9.2e-196 687.6 576 64.2
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 3.5e-195 685.6 596 63.4
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 5.9e-195 684.9 570 63.2
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 1.3e-194 683.7 574 62.4
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 1.7e-194 683.3 572 63.1
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 5.6e-193 678.3 572 63.8
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 7.3e-193 677.9 575 62.1
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 8.0e-192 674.5 504 66.9
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 1.4e-191 673.7 578 62.1
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 2.3e-191 672.9 565 63.0
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 5.2e-191 671.8 576 62.7
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 1.5e-190 670.2 568 61.3
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 3.4e-190 669.1 577 61.5
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 7.5e-190 667.9 579 61.8
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 2.9e-189 666.0 575 61.9
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 3.7e-189 665.6 587 60.6
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 8.3e-189 664.5 576 63.2
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 3.2e-188 662.5 579 60.1
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 5.4e-188 661.8 581 59.9
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 5.4e-188 661.8 584 62.0
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 9.2e-188 661.0 575 61.6
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 1.6e-187 660.2 573 59.7
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.6e-187 660.2 576 62.8
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 2.7e-187 659.4 572 60.7
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 3.5e-187 659.1 580 60.3
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 3.5e-187 659.1 581 59.7
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 3.5e-187 659.1 581 59.7
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 4.6e-187 658.7 569 60.8
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 6.0e-187 658.3 580 60.2
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 1.0e-186 657.5 569 60.6
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 2.3e-186 656.4 576 60.1
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 1.1e-185 654.1 577 61.2
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 1.2e-184 650.6 575 61.7
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 3.6e-184 649.0 604 57.6
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 1.1e-183 647.5 580 59.5
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 1.8e-183 646.7 503 67.8
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 1.3e-181 640.6 586 58.9
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 4.1e-180 635.6 612 57.5
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 2.1e-179 633.3 579 58.5
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 2.3e-178 629.8 598 59.0
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 5.1e-178 628.6 580 58.4
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 2.1e-176 623.2 481 67.2
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 1.6e-171 607.1 656 53.8
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 2.1e-171 606.7 514 64.8
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 3.0e-170 602.8 476 66.0
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.1e-169 600.9 578 57.8
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 2.5e-169 599.7 605 55.0
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 1.6e-168 597.0 487 64.7
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 1.3e-165 587.4 536 56.5
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 3.9e-162 575.9 511 59.1
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 2.1e-160 570.1 573 56.4
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 1.2e-158 564.3 574 55.4
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 6.4e-157 558.5 577 57.0
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 3.5e-155 552.7 571 52.5
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 7.9e-155 551.6 492 58.9
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 6.6e-154 548.5 557 57.5
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 6.7e-146 521.9 489 58.3
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.9e-145 520.4 512 53.7
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.2e-142 511.1 340 74.7
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 4.5e-142 509.2 594 51.2
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.1e-135 486.5 354 68.6
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 1.4e-132 477.6 354 68.1
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 3.8e-125 453.0 542 50.4
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 5.0e-125 452.6 493 52.5
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 6.5e-125 452.2 410 60.7
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.9e-109 400.2 405 57.0
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.5e-108 397.9 365 58.4
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 8.0e-107 392.1 243 82.3
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 5.7e-105 386.0 242 79.3
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 5.7e-105 386.0 242 79.3
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 7.0e-103 379.0 425 50.6
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.6e-102 377.9 233 79.0
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 4.5e-102 376.3 287 66.6
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 4.5e-102 376.3 422 53.6
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 8.0e-99 365.5 399 49.9
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 7.0e-95 352.4 406 50.5
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 4.5e-94 349.7 440 47.3
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 1.6e-91 341.3 310 56.8
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 3.6e-91 340.1 336 55.7
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.4e-89 333.2 192 86.5
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 6.6e-85 319.3 564 37.1
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 1.3e-80 305.1 585 36.1
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 4.0e-74 283.5 159 86.8
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 1.5e-65 255.0 467 38.3
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 3.9e-61 240.4 143 84.6
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 8.6e-61 239.2 239 58.6
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.1e-59 234.6 143 85.3
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.0e-58 230.3 143 83.2
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 4.9e-56 223.4 134 85.8
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 9.2e-55 219.2 128 87.5
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 3.9e-53 213.8 273 47.3
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-49 199.9 528 30.3
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 8.7e-45 186.0 500 29.4
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 7.4e-36 156.4 181 51.4
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.8e-35 154.5 88 88.6
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 5.3e-34 150.2 209 45.9
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.3e-32 145.6 94 78.7
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.7e-32 145.2 169 49.7
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.8e-26 125.2 139 50.4
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 6.7e-21 106.7 573 27.9
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 2.5e-20 104.8 132 47.0
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.1e-19 101.7 258 29.5
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 6.9e-18 96.7 91 59.3
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 1.2e-17 95.9 257 30.0
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.9e-16 91.3 52 86.5
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 4.6e-14 84.0 45 86.7


User provided reference genes

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