Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 1.2e-52 209.5 105 100.0
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 2.7e-28 128.6 106 67.9
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 1.8e-19 99.4 105 52.4
CSS0012629 Camellia sinensis var. sinensis HOM05D007861 ORTHO05D007271 1.4e-16 89.7 105 46.7
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 4.1e-16 88.2 96 47.9
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 9.1e-16 87.0 95 45.3
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 2.7e-15 85.5 101 49.5
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 4.5e-15 84.7 105 45.7
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 5.9e-15 84.3 107 50.5
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 1.3e-14 83.2 83 53.0
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 1.7e-14 82.8 107 46.7
TAR623G0050 Trochodendron aralioides HOM05D007861 ORTHO05D007271 2.2e-14 82.4 112 44.6
Manes.11G150200 Manihot esculenta HOM05D007861 ORTHO05D007271 1.9e-13 79.3 104 45.2
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 1.9e-13 79.3 93 53.8
QL08p054789 Quercus lobata HOM05D009695 ORTHO05D007271 9.5e-13 77.0 94 48.9
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 2.1e-12 75.9 96 40.6
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 2.1e-12 75.9 103 39.8
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 3.6e-12 75.1 105 45.7
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 4.7e-12 74.7 103 42.7
Ciclev10033954m.g Citrus clementina HOM05D007861 ORTHO05D007271 8.0e-12 73.9 97 46.4
CiPaw.02G172600 Carya illinoinensis HOM05D019773 ORTHO05D007271 1.0e-11 73.6 102 47.1
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 1.0e-11 73.6 107 41.1
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 1.4e-11 73.2 99 45.5
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 1.8e-11 72.8 99 44.4
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 2.3e-11 72.4 99 48.5
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 2.3e-11 72.4 107 46.7
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 2.3e-11 72.4 107 46.7
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 2.3e-11 72.4 98 45.9
Gohir.D05G294900 Gossypium hirsutum HOM05D009695 ORTHO05D007271 5.2e-11 71.2 95 45.3
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 5.2e-11 71.2 109 44.0
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 6.8e-11 70.9 99 43.4
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 6.8e-11 70.9 95 45.3
Gorai.009G311600 Gossypium raimondii HOM05D009695 ORTHO05D007271 6.8e-11 70.9 95 45.3
COL.COLO4_10198 Corchorus olitorius HOM05D009695 ORTHO05D007271 1.2e-10 70.1 96 44.8
Cc02_g11000 Coffea canephora HOM05D009695 ORTHO05D007271 1.5e-10 69.7 100 40.0
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 2.0e-10 69.3 103 41.7
Manes.10G049800 Manihot esculenta HOM05D009695 ORTHO05D007271 2.0e-10 69.3 95 41.1
DCAR_019088 Daucus carota HOM05D009695 ORTHO05D007271 2.6e-10 68.9 107 41.1
MBI18_g25264_MAGBIO Magnolia biondii HOM05D022601 ORTHO05D023448 3.4e-10 68.6 99 45.5
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 3.4e-10 68.6 104 45.2
Phvul.007G098200 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 7.5e-10 67.4 90 46.7
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 9.8e-10 67.0 89 46.1
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 9.8e-10 67.0 74 54.1
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 9.8e-10 67.0 96 44.8
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 9.8e-10 67.0 96 44.8
Cpa.g.sc53.122 Carica papaya HOM05D009695 ORTHO05D007271 1.7e-09 66.2 99 44.4
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 1.7e-09 66.2 82 45.1
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 1.7e-09 66.2 92 41.3
Migut.F01962 Erythranthe guttata HOM05D007861 ORTHO05D007271 1.7e-09 66.2 66 48.5
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 1.7e-09 66.2 103 39.8
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 1.7e-09 66.2 103 39.8
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 1.7e-09 66.2 103 39.8
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 1.7e-09 66.2 100 44.0
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 1.7e-09 66.2 109 39.4
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 1.7e-09 66.2 95 41.1
Cfa001682 Carpinus fangiana HOM05D009695 ORTHO05D007271 2.2e-09 65.9 96 41.7
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 2.2e-09 65.9 109 39.4
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 2.2e-09 65.9 88 46.6
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 2.2e-09 65.9 103 39.8
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 2.8e-09 65.5 104 40.4
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 4.9e-09 64.7 106 41.5
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 4.9e-09 64.7 106 38.7
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 8.3e-09 63.9 89 42.7
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 1.1e-08 63.5 107 40.2
EL10Ac9g21645 Beta vulgaris HOM05D009695 ORTHO05D007271 1.4e-08 63.2 95 43.2
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 1.8e-08 62.8 106 37.7
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 1.8e-08 62.8 101 42.6
Thhalv10017662m.g Eutrema salsugineum HOM05D014739 ORTHO05D007271 2.4e-08 62.4 103 36.9
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.4e-08 62.4 89 41.6
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 2.4e-08 62.4 85 42.4
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 3.1e-08 62.0 89 46.1
Psat6g181720 Pisum sativum HOM05D007861 ORTHO05D007271 3.1e-08 62.0 75 49.3
Prupe.2G209700 Prunus persica HOM05D019773 ORTHO05D007271 3.1e-08 62.0 112 37.5
Thecc.10G081700 Theobroma cacao HOM05D009695 ORTHO05D007271 3.1e-08 62.0 73 47.9
TPR.G10289 Trifolium pratense HOM05D007861 ORTHO05D007271 3.1e-08 62.0 80 47.5
Haze_16853 Corylus avellana HOM05D009695 ORTHO05D007271 4.1e-08 61.6 87 42.5
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 5.4e-08 61.2 106 38.7
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 7.0e-08 60.8 86 41.9
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 7.0e-08 60.8 94 40.4
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 9.2e-08 60.5 84 46.4
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 1.2e-07 60.1 55 50.9
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 1.6e-07 59.7 104 39.4
PGSC0003DMG400007440 Solanum tuberosum HOM05D009695 ORTHO05D007271 1.6e-07 59.7 100 38.0
Potri.009G008300 Populus trichocarpa HOM05D007861 ORTHO05D007271 2.0e-07 59.3 89 46.1
Hma1.2p1_0344F.1_g131140 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 2.7e-07 58.9 61 44.3
Lj5g0009165 Lotus japonicus HOM05D007861 ORTHO05D007271 2.7e-07 58.9 97 42.3
Carub.0004s0882 Capsella rubella HOM05D014739 ORTHO05D007271 3.5e-07 58.5 62 48.4
AUR62016822 Chenopodium quinoa HOM05D000120 ORTHO05D009410 3.5e-07 58.5 102 37.3
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 4.5e-07 58.2 67 49.3
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 4.5e-07 58.2 106 39.6
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 5.9e-07 57.8 109 36.7
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 5.9e-07 57.8 83 45.8
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 1.0e-06 57.0 98 39.8
Lsat_1_v5_gn_6_43600 Lactuca sativa HOM05D007861 ORTHO05D007271 1.0e-06 57.0 65 47.7
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 1.0e-06 57.0 91 39.6
Eucgr.J00896 Eucalyptus grandis HOM05D007861 ORTHO05D007271 1.3e-06 56.6 67 40.3
Solyc11g069730.1 Solanum lycopersicum HOM05D007861 ORTHO05D007271 1.3e-06 56.6 94 33.0
ECA233G4124 Erigeron canadensis HOM05D007861 ORTHO05D007271 2.9e-06 55.5 72 44.4
Glyma.20G182100 Glycine max HOM05D007861 ORTHO05D007271 2.9e-06 55.5 89 41.6
C04p57110 Brassica napus HOM05D014739 ORTHO05D007271 3.8e-06 55.1 60 48.3
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 3.8e-06 55.1 60 48.3
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 3.8e-06 55.1 87 43.7
CARHR120770 Cardamine hirsuta HOM05D014739 ORTHO05D007271 5.0e-06 54.7 59 47.5
BcaB06g28183 Brassica carinata HOM05D014739 ORTHO05D007271 6.6e-06 54.3 60 48.3
BcaC02g08213 Brassica carinata HOM05D014739 ORTHO05D007271 6.6e-06 54.3 60 48.3
A04p21280 Brassica napus HOM05D014739 ORTHO05D007271 6.6e-06 54.3 60 48.3
BolC4t27246H Brassica oleracea HOM05D014739 ORTHO05D007271 6.6e-06 54.3 60 48.3
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 6.6e-06 54.3 66 39.4
Sabra09G0004800 Salix brachista HOM05D007861 ORTHO05D007271 6.6e-06 54.3 84 41.7


User provided reference genes

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