Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 5.6e-104 380.9 191 100.0
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 4.9e-68 261.5 200 70.5
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 2.9e-60 235.7 197 67.0
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 1.5e-56 223.4 196 64.3
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 2.4e-54 216.1 194 61.3
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 2.0e-53 213.0 174 68.4
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 1.0e-52 210.7 184 63.0
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 1.7e-52 209.9 184 61.4
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 2.2e-52 209.5 198 63.1
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 2.2e-52 209.5 191 60.2
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 4.9e-52 208.4 189 57.7
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 4.2e-51 205.3 192 59.4
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 4.2e-51 205.3 184 59.2
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 9.3e-51 204.1 178 61.2
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 9.3e-51 204.1 191 59.7
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 3.5e-50 202.2 197 58.4
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 7.9e-50 201.1 185 60.0
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 7.9e-50 201.1 170 64.1
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 1.3e-49 200.3 148 73.6
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 1.8e-49 199.9 196 57.7
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 2.3e-49 199.5 199 57.3
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 5.1e-49 198.4 184 58.7
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.1e-48 197.2 159 64.2
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 1.5e-48 196.8 190 58.4
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 1.5e-48 196.8 196 54.6
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 1.9e-48 196.4 159 66.7
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.5e-48 196.1 200 57.0
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 4.3e-48 195.3 196 57.7
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 5.7e-48 194.9 200 56.0
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 8.2e-47 191.0 196 54.1
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 1.1e-46 190.7 170 65.3
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 1.8e-46 189.9 146 69.9
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 4.1e-46 188.7 180 56.7
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 5.3e-46 188.3 195 57.4
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 6.9e-46 188.0 191 53.9
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 6.9e-46 188.0 196 53.1
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 9.0e-46 187.6 204 52.9
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 1.5e-45 186.8 192 52.6
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 2.6e-45 186.0 134 68.7
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 3.4e-45 185.7 187 55.6
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 3.4e-45 185.7 191 57.1
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 5.9e-45 184.9 147 65.3
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 5.9e-45 184.9 189 54.5
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 5.9e-45 184.9 139 69.8
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 7.6e-45 184.5 147 63.9
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 6.5e-44 181.4 197 55.3
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 1.4e-43 180.3 152 65.1
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 1.4e-43 180.3 144 65.3
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 1.4e-43 180.3 188 53.7
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 1.4e-43 180.3 139 69.1
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 2.5e-43 179.5 144 65.3
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 4.2e-43 178.7 176 57.4
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 7.2e-43 177.9 176 55.1
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 9.3e-43 177.6 143 67.1
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 1.6e-42 176.8 136 68.4
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 1.6e-42 176.8 136 68.4
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 1.6e-42 176.8 136 68.4
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 2.7e-42 176.0 99 80.8
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 3.6e-42 175.6 193 52.3
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 3.6e-42 175.6 129 69.0
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 6.1e-42 174.9 174 56.3
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 7.9e-42 174.5 100 83.0
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 2.3e-41 172.9 180 53.3
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 6.7e-41 171.4 109 74.3
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 8.7e-41 171.0 185 52.4
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 7.4e-40 167.9 137 64.2
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 9.7e-40 167.5 110 73.6
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 1.3e-39 167.2 129 62.8
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 1.3e-39 167.2 184 51.6
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 1.6e-39 166.8 192 50.5
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 2.2e-39 166.4 107 72.0
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 2.8e-39 166.0 164 55.5
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 3.7e-39 165.6 110 72.7
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 3.7e-39 165.6 198 52.5
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 6.3e-39 164.9 192 52.1
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 1.4e-38 163.7 98 74.5
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 1.4e-38 163.7 197 49.7
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 1.4e-38 163.7 204 49.0
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 1.8e-38 163.3 194 50.0
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 1.8e-38 163.3 140 62.1
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 1.8e-38 163.3 116 67.2
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 2.4e-38 162.9 136 59.6
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 4.1e-38 162.2 199 48.7
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 6.9e-38 161.4 185 51.4
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 9.1e-38 161.0 147 57.8
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 2.0e-37 159.8 201 50.7
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 2.6e-37 159.5 142 55.6
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 3.4e-37 159.1 194 50.0
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 4.5e-37 158.7 195 49.7
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 4.5e-37 158.7 83 88.0
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 5.9e-37 158.3 194 50.0
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 5.9e-37 158.3 181 49.7
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 7.7e-37 157.9 194 49.5
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 7.7e-37 157.9 195 49.7
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 1.3e-36 157.1 193 49.7
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 1.3e-36 157.1 194 49.5
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 2.2e-36 156.4 193 50.8
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 3.8e-36 155.6 194 49.5
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 6.5e-36 154.8 189 48.1
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 1.4e-35 153.7 189 47.6
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 1.4e-35 153.7 194 49.0
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 1.4e-35 153.7 146 54.8
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 2.5e-35 152.9 189 48.1
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 3.2e-35 152.5 199 48.7
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 3.2e-35 152.5 163 52.8
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 4.2e-35 152.1 127 59.8
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 6.7e-33 144.8 241 39.0
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.0e-32 143.3 241 38.6
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 3.3e-32 142.5 91 73.6
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 4.4e-32 142.1 241 38.6
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 4.4e-32 142.1 241 38.6
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.2e-31 139.8 105 65.7
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 3.7e-31 139.0 77 80.5
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 1.2e-29 134.0 95 62.1
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 2.2e-28 129.8 103 59.2
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.6e-26 123.6 97 62.9
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 6.1e-26 121.7 89 61.8
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 7.9e-26 121.3 132 50.0
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 1.0e-25 120.9 97 60.8
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 2.0e-24 116.7 88 60.2
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 4.1e-22 109.0 85 61.2
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 1.6e-21 107.1 72 66.7
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 1.7e-20 103.6 121 50.4
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 5.0e-20 102.1 135 41.5
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 1.1e-19 100.9 157 40.1
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.5e-19 99.8 112 51.8
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 6.1e-18 95.1 116 43.1
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 4.0e-17 92.4 117 47.0
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.6e-16 89.7 89 55.1
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 7.7e-13 78.2 99 46.5
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 2.2e-12 76.6 72 48.6
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 3.2e-11 72.8 70 45.7
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 9.4e-11 71.2 76 52.6
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 2.7e-10 69.7 62 51.6
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 6.1e-10 68.6 84 39.3
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 1.4e-09 67.4 159 34.0
unitig_27.g25229 Utricularia gibba HOM05D002826 ORTHO05D003105 1.4e-06 57.4 60 41.7


User provided reference genes

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