Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11491 Nelumbo nucifera HOM05D006865 ORTHO05D009005 8.6e-67 256.9 136 100.0
Nn3g18133 Nelumbo nucifera HOM05D006865 ORTHO05D009005 4.5e-39 164.9 118 80.5
CSS0046438 Camellia sinensis var. sinensis HOM05D006865 ORTHO05D009005 2.5e-29 132.5 112 67.0
Dinv30268 Davidia involucrata HOM05D006865 ORTHO05D009005 3.2e-29 132.1 115 67.0
Lj8A588T26 Lonicera japonica HOM05D006865 ORTHO05D009005 3.2e-29 132.1 118 63.6
Sabra06G0188000 Salix brachista HOM05D006865 ORTHO05D009005 7.9e-28 127.5 115 63.5
Atru.chr7.2136 Acer truncatum HOM05D006865 ORTHO05D009005 1.0e-27 127.1 116 62.9
Potri.006G240400 Populus trichocarpa HOM05D006865 ORTHO05D009005 1.1e-26 123.6 120 62.5
Ciclev10008902m.g Citrus clementina HOM05D006865 ORTHO05D009005 1.5e-26 123.2 114 63.2
CiPaw.07G205700 Carya illinoinensis HOM05D006865 ORTHO05D009005 5.7e-26 121.3 116 62.1
PSO210G5031 Papaver somniferum HOM05D006865 ORTHO05D009005 3.7e-25 118.6 116 61.2
FAN27G2310 Fragaria x ananassa HOM05D006865 ORTHO05D009005 4.8e-25 118.2 113 60.2
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 8.2e-25 117.5 118 61.0
FvH4_2g35860 Fragaria vesca HOM05D006865 ORTHO05D009005 8.2e-25 117.5 113 60.2
FAN15G3339 Fragaria x ananassa HOM05D006865 ORTHO05D009005 8.2e-25 117.5 113 60.2
QL12p029455 Quercus lobata HOM05D006865 ORTHO05D009005 1.4e-24 116.7 114 60.5
RcHm_v2.0_Chr6g0305961 Rosa chinensis HOM05D006865 ORTHO05D009005 1.8e-24 116.3 113 59.3
TWI63G0791 Tripterygium wilfordii HOM05D006865 ORTHO05D009005 1.8e-24 116.3 112 59.8
Lsat_1_v5_gn_1_49660 Lactuca sativa HOM05D006865 ORTHO05D009005 5.3e-24 114.8 117 62.4
PSO210G4422 Papaver somniferum HOM05D006865 ORTHO05D009005 9.0e-24 114.0 136 55.9
Manes.16G071500 Manihot esculenta HOM05D006865 ORTHO05D009005 2.0e-23 112.8 116 62.1
PGR044G0390 Punica granatum HOM05D006865 ORTHO05D009005 3.4e-23 112.1 118 55.9
Haze_19694 Corylus avellana HOM05D006865 ORTHO05D009005 5.9e-23 111.3 114 57.9
Duzib187G1827 Durio zibethinus HOM05D006865 ORTHO05D009005 7.6e-23 110.9 118 55.9
Sopen11g028930 Solanum pennellii HOM05D006865 ORTHO05D009005 7.6e-23 110.9 113 60.2
Solyc11g071240.2 Solanum lycopersicum HOM05D006865 ORTHO05D009005 2.2e-22 109.4 113 59.3
Cfa016677 Carpinus fangiana HOM05D006865 ORTHO05D009005 2.9e-22 109.0 114 57.0
MD15G1095700 Malus domestica HOM05D006865 ORTHO05D009005 3.8e-22 108.6 113 57.5
ECA248G0081 Erigeron canadensis HOM05D006865 ORTHO05D009005 5.0e-22 108.2 116 60.3
DCAR_007711 Daucus carota HOM05D006865 ORTHO05D009005 8.5e-22 107.5 113 58.4
PGSC0003DMG400018564 Solanum tuberosum HOM05D006865 ORTHO05D009005 8.5e-22 107.5 113 58.4
Nn2g10603 Nelumbo nucifera HOM05D006865 ORTHO05D009005 1.4e-21 106.7 95 68.4
Prupe.1G450700 Prunus persica HOM05D006865 ORTHO05D009005 1.4e-21 106.7 113 55.8
Peaxi162Scf00276g00123 Petunia axillaris HOM05D006865 ORTHO05D009005 3.2e-21 105.5 114 58.8
unitig_85.g27151 Utricularia gibba HOM05D006865 ORTHO05D009005 3.2e-21 105.5 110 55.5
Nitab4.5_0000664g0200 Nicotiana tabacum HOM05D006865 ORTHO05D009005 5.5e-21 104.8 113 57.5
MELO3C003458.2 Cucumis melo HOM05D006865 ORTHO05D009005 9.4e-21 104.0 117 53.0
CsaV3_3G048620 Cucumis sativus L. HOM05D006865 ORTHO05D009005 9.4e-21 104.0 117 53.0
Nitab4.5_0001567g0190 Nicotiana tabacum HOM05D006865 ORTHO05D009005 1.2e-20 103.6 113 56.6
ClCG11G015200 Citrullus lanatus HOM05D006865 ORTHO05D009005 1.6e-20 103.2 117 52.1
HanXRQChr11g0351701 Helianthus annuus HOM05D006865 ORTHO05D009005 1.6e-20 103.2 122 56.6
Migut.E01518 Erythranthe guttata HOM05D006865 ORTHO05D009005 4.6e-20 101.7 113 53.1
Oeu031553.1 Olea europaea HOM05D006865 ORTHO05D009005 4.6e-20 101.7 119 52.9
Sed0006345 Sechium edule HOM05D006865 ORTHO05D009005 6.1e-20 101.3 116 52.6
EL10Ac2g04049 Beta vulgaris HOM05D006865 ORTHO05D009005 1.8e-19 99.8 111 53.2
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 3.0e-19 99.0 111 55.0
CDE08G1680 Ceratophyllum demersum HOM05D006865 ORTHO05D009005 3.9e-19 98.6 111 54.1
Glyma.06G083600 Glycine max HOM05D006865 ORTHO05D009005 3.9e-19 98.6 109 55.0
Lalb_Chr23g0269541 Lupinus albus HOM05D006865 ORTHO05D009005 3.9e-19 98.6 113 52.2
BcaC03g13374 Brassica carinata HOM05D006865 ORTHO05D009005 5.1e-19 98.2 121 51.2
C02p05200 Brassica napus HOM05D006865 ORTHO05D009005 5.1e-19 98.2 121 49.6
BolC2t06470H Brassica oleracea HOM05D006865 ORTHO05D009005 5.1e-19 98.2 121 49.6
Ca_15607_v3 Cicer arietinum L. HOM05D006865 ORTHO05D009005 8.8e-19 97.4 100 57.0
Medtr3g110138 Medicago truncatula HOM05D006865 ORTHO05D009005 8.8e-19 97.4 100 57.0
Glyma.04G081900 Glycine max HOM05D006865 ORTHO05D009005 1.5e-18 96.7 105 53.3
MSTRG.14022 Avicennia marina HOM05D006865 ORTHO05D009005 1.9e-18 96.3 135 46.7
SGA_v2.0_scaffold163G38079 Striga asiatica HOM05D006865 ORTHO05D009005 1.9e-18 96.3 115 50.4
THA.LOC104814775 Tarenaya hassleriana HOM05D006865 ORTHO05D009005 2.5e-18 95.9 117 49.6
Hma1.2p1_1163F.1_g262770 Hydrangea macrophylla HOM05D006865 ORTHO05D009005 3.3e-18 95.5 108 53.7
Phvul.009G107700 Phaseolus vulgaris HOM05D006865 ORTHO05D009005 3.3e-18 95.5 103 54.4
Psat5g022760 Pisum sativum HOM05D006865 ORTHO05D009005 3.3e-18 95.5 100 56.0
AT5G11550 Arabidopsis thaliana HOM05D006865 ORTHO05D009005 5.7e-18 94.7 121 48.8
BcaC04g19215 Brassica carinata HOM05D006865 ORTHO05D009005 5.7e-18 94.7 120 50.0
C09p65260 Brassica napus HOM05D006865 ORTHO05D009005 5.7e-18 94.7 120 50.0
CANSAT25G0847 Cannabis sativa HOM05D006865 ORTHO05D009005 5.7e-18 94.7 113 53.1
Thhalv10014169m.g Eutrema salsugineum HOM05D006865 ORTHO05D009005 7.4e-18 94.4 120 49.2
Sc23g0005180 Simmondsia chinensis HOM05D006865 ORTHO05D009005 7.4e-18 94.4 116 54.3
VMungo1309G1411 Vigna mungo HOM05D006865 ORTHO05D009005 1.3e-17 93.6 103 53.4
A02p01060 Brassica napus HOM05D006865 ORTHO05D009005 1.7e-17 93.2 121 48.8
BraA02t05086Z Brassica rapa HOM05D006865 ORTHO05D009005 1.7e-17 93.2 121 48.8
BcaNung01933 Brassica carinata HOM05D006865 ORTHO05D009005 2.8e-17 92.4 121 47.9
BcaB08g37044 Brassica carinata HOM05D006865 ORTHO05D009005 4.8e-17 91.7 120 48.3
Carub.0006s1002 Capsella rubella HOM05D006865 ORTHO05D009005 4.8e-17 91.7 117 48.7
CARHR201670 Cardamine hirsuta HOM05D006865 ORTHO05D009005 4.8e-17 91.7 120 48.3
Sp6g32050 Schrenkiella parvula HOM05D006865 ORTHO05D009005 6.3e-17 91.3 121 48.8
Lj1g0027381 Lotus japonicus HOM05D006865 ORTHO05D009005 1.4e-16 90.1 97 55.7
A10p26220 Brassica napus HOM05D006865 ORTHO05D009005 1.8e-16 89.7 120 48.3
BraA10t44679Z Brassica rapa HOM05D006865 ORTHO05D009005 1.8e-16 89.7 120 48.3
AL6G22220 Arabidopsis lyrata HOM05D006865 ORTHO05D009005 2.4e-16 89.4 108 50.0
BolC9t59354H Brassica oleracea HOM05D006865 ORTHO05D009005 2.4e-16 89.4 122 48.4
Aa31LG3G15650 Aethionema arabicum HOM05D006865 ORTHO05D009005 4.1e-16 88.6 113 46.9
Medtr3g110088 Medicago truncatula HOM05D006865 ORTHO05D009005 6.9e-16 87.8 95 54.7
TAR636G1122 Trochodendron aralioides HOM05D006865 ORTHO05D009005 9.1e-16 87.4 68 73.5
Cc08_g09210 Coffea canephora HOM05D006865 ORTHO05D009005 5.9e-15 84.7 113 51.3
Zm00001eb295560 Zea mays HOM05D006865 ORTHO05D009005 3.2e-13 79.0 113 46.9
Nn6g34726 Nelumbo nucifera HOM05D006865 ORTHO05D009005 2.1e-12 76.3 64 70.3
Nn5g30747 Nelumbo nucifera HOM05D006865 ORTHO05D009005 4.7e-12 75.1 54 79.6
Os05g0559350 Oryza sativa ssp. japonica HOM05D006865 ORTHO05D009005 1.4e-11 73.6 115 45.2
Thecc.09G042300 Theobroma cacao HOM05D006865 ORTHO05D009005 2.3e-11 72.8 62 67.7
AUR62009307 Chenopodium quinoa HOM05D006865 ORTHO05D009005 8.8e-11 70.9 118 43.2
BcaB01g05476 Brassica carinata HOM05D006865 ORTHO05D009005 4.4e-10 68.6 87 51.7
TPR.G1329 Trifolium pratense HOM05D006865 ORTHO05D009005 4.4e-10 68.6 65 61.5
Nn1g00141 Nelumbo nucifera HOM05D006865 ORTHO05D009005 3.7e-09 65.5 42 78.6
Zm00001eb343440 Zea mays HOM05D006865 ORTHO05D009005 3.7e-09 65.5 106 46.2
Aqoxy7G03866 Aquilegia oxysepala HOM05D006865 ORTHO05D009005 7.0e-08 61.2 43 72.1
ATR0584G241 Amborella trichopoda HOM05D000271 ORTHO05D004758 9.1e-08 60.8 103 36.9
Sc08g0001720 Simmondsia chinensis HOM05D000271 ORTHO05D004758 2.6e-07 59.3 112 34.8
SMO174G0141 Selaginella moellendorffii HOM05D006865 ORTHO05D004758 5.9e-07 58.2 112 35.7
Ciclev10028522m.g Citrus clementina HOM05D000271 ORTHO05D004758 7.7e-07 57.8 112 33.9
Pp3c13_7510 Physcomitrium patens HOM05D006865 ORTHO05D004758 1.0e-06 57.4 97 44.3
MELO3C019521.2 Cucumis melo HOM05D000271 ORTHO05D004758 1.7e-06 56.6 110 37.3
Pp3c4_28800 Physcomitrium patens HOM05D006865 ORTHO05D009005 1.7e-06 56.6 94 40.4
Sed0018393 Sechium edule HOM05D000271 ORTHO05D004758 1.7e-06 56.6 112 34.8
ClCG05G010100 Citrullus lanatus HOM05D000271 ORTHO05D004758 2.2e-06 56.2 110 36.4
CsaV3_3G018440 Cucumis sativus L. HOM05D000271 ORTHO05D004758 2.2e-06 56.2 110 36.4
SEGI_21396 Sequoiadendron giganteum HOM05D000271 ORTHO05D004758 2.2e-06 56.2 112 34.8
Atru.chr5.2665 Acer truncatum HOM05D000271 ORTHO05D004758 2.9e-06 55.8 112 33.0
ECA234G4675 Erigeron canadensis HOM05D000271 ORTHO05D004758 2.9e-06 55.8 116 32.8
HanXRQChr16g0514951 Helianthus annuus HOM05D000271 ORTHO05D004758 2.9e-06 55.8 109 33.9
Thecc.02G102700 Theobroma cacao HOM05D000271 ORTHO05D004758 2.9e-06 55.8 112 33.0
HanXRQChr10g0301971 Helianthus annuus HOM05D000271 ORTHO05D004758 3.8e-06 55.5 110 33.6
Psat7g125600 Pisum sativum HOM05D000271 ORTHO05D004758 3.8e-06 55.5 113 34.5
CSS0008597 Camellia sinensis var. sinensis HOM05D000271 ORTHO05D004758 5.0e-06 55.1 109 34.9
Medtr4g085720 Medicago truncatula HOM05D000271 ORTHO05D004758 5.0e-06 55.1 113 34.5
Potri.004G140100 Populus trichocarpa HOM05D000271 ORTHO05D004758 5.0e-06 55.1 112 33.0
SEGI_20265 Sequoiadendron giganteum HOM05D006865 ORTHO05D004758 5.0e-06 55.1 96 43.8
SGA_v2.0_scaffold90G27623 Striga asiatica HOM05D000271 ORTHO05D004758 5.0e-06 55.1 119 35.3
TPR.G31591 Trifolium pratense HOM05D000271 ORTHO05D004758 5.0e-06 55.1 113 34.5
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 6.5e-06 54.7 43 65.1
Duzib052G0896 Durio zibethinus HOM05D000271 ORTHO05D004758 6.5e-06 54.7 112 30.4
Duzib132G0157 Durio zibethinus HOM05D000271 ORTHO05D004758 6.5e-06 54.7 112 33.0
Ca_18704_v3 Cicer arietinum L. HOM05D000271 ORTHO05D004758 8.5e-06 54.3 113 35.4
Sabra09G0076300 Salix brachista HOM05D000271 ORTHO05D004758 8.5e-06 54.3 113 33.6
VMungo0251G3086 Vigna mungo HOM05D000271 ORTHO05D004758 8.5e-06 54.3 110 34.5


User provided reference genes

Program Settings