Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 0.0e+00 2520.7 1298 100.0
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 3.1e-254 882.9 1313 43.8
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 6.6e-249 865.1 1342 42.5
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.4e-227 794.3 1304 41.5
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 2.9e-196 690.3 1313 39.4
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.4e-195 688.0 1313 39.2
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 8.2e-191 672.2 1284 38.9
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 3.5e-189 666.8 1336 38.1
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.9e-188 663.7 1351 37.4
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 1.4e-185 654.8 1317 38.6
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 3.5e-181 640.2 1326 37.9
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 1.0e-164 585.5 1367 34.5
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 1.3e-164 585.1 1228 37.2
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 1.5e-163 581.6 1321 35.5
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 4.4e-160 570.1 1317 35.3
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 9.5e-155 552.4 1249 35.7
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.2e-154 552.0 1364 33.7
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 5.2e-153 546.6 1309 34.8
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 2.9e-151 540.8 1303 34.8
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 4.9e-151 540.0 1290 34.7
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 9.2e-150 535.8 1341 34.1
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 6.0e-149 533.1 1305 34.6
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.0e-148 532.3 1363 33.2
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 1.5e-147 528.5 1311 33.6
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 4.3e-147 526.9 1331 34.7
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 8.0e-146 522.7 1326 34.0
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 1.8e-145 521.5 1343 33.6
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 8.3e-143 512.7 1330 34.5
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 1.1e-142 512.3 1347 32.7
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.5e-139 501.9 1309 33.8
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 4.7e-138 496.9 1326 33.5
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 9.9e-136 489.2 1341 33.4
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 2.9e-135 487.6 1255 33.9
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 1.4e-134 485.3 1310 33.4
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 1.9e-134 485.0 1311 33.6
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 1.9e-134 485.0 1324 32.5
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 3.5e-133 480.7 1354 33.3
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 6.0e-133 479.9 1323 33.0
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 2.3e-132 478.0 1329 33.8
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 2.1e-130 471.5 1359 33.6
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 4.0e-129 467.2 1328 32.8
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 6.0e-125 453.4 1127 35.0
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 2.3e-124 451.4 1311 32.5
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 2.5e-123 448.0 1355 31.9
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 2.0e-120 438.3 1248 33.3
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 4.4e-120 437.2 1280 31.6
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 1.7e-119 435.3 1329 32.1
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 7.1e-118 429.9 1243 30.1
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.6e-117 428.7 1329 31.8
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 5.1e-116 423.7 1323 32.0
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 6.6e-116 423.3 1317 31.5
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.1e-115 422.5 1330 32.0
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 2.4e-113 414.8 1227 30.6
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 5.3e-113 413.7 1271 32.7
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 3.4e-112 411.0 1322 31.5
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 8.4e-111 406.4 1288 31.7
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 1.9e-110 405.2 1251 31.4
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 9.6e-107 392.9 1324 29.5
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 3.4e-104 384.4 1215 30.5
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 7.6e-104 383.3 1217 30.6
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 5.7e-99 367.1 1247 29.8
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 2.5e-94 351.7 587 41.4
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 7.1e-94 350.1 1239 29.6
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 5.1e-92 344.0 1208 29.5
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 2.8e-90 338.2 1386 28.2
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 6.7e-84 317.0 1264 27.8
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.5e-83 315.1 1256 28.9
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 7.9e-77 293.5 1307 28.5
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 2.6e-72 278.5 1213 27.6
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.0e-68 264.6 1136 27.6
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 1.1e-67 263.1 290 50.7
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.0e-67 262.3 992 28.3
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 7.7e-64 250.4 727 30.9
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 7.2e-62 243.8 803 30.6
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 4.7e-61 241.1 723 31.3
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 3.0e-60 238.4 455 38.9
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.0e-55 223.4 484 34.1
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 8.5e-55 220.3 667 31.3
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.1e-54 219.9 1290 26.1
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.9e-54 219.2 1215 26.7
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 3.0e-52 211.8 326 43.3
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 8.8e-52 210.3 486 34.0
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 8.8e-52 210.3 372 36.8
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 3.1e-49 201.8 652 29.0
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 2.0e-48 199.1 733 27.6
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 8.6e-47 193.7 1221 28.5
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 3.0e-44 185.3 840 26.9
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.2e-42 179.1 754 29.7
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 2.9e-42 178.7 630 28.6
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.1e-41 176.8 321 36.8
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 7.8e-40 170.6 1209 25.6
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 1.3e-39 169.9 990 26.4
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 2.8e-37 162.2 573 30.2
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 3.6e-37 161.8 458 29.9
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.2e-35 156.8 736 29.1
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.5e-35 156.4 744 29.6
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 3.5e-32 145.2 433 32.6
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 7.8e-32 144.1 433 32.6
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.9e-31 141.7 520 31.5
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.2e-29 136.7 762 27.3
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 8.1e-29 134.0 355 33.2
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.0e-27 129.4 413 31.7
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 8.3e-26 124.0 1190 23.1
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 1.2e-24 120.2 516 28.9
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.1e-24 119.4 331 34.4
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 4.6e-24 118.2 544 27.8
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.7e-23 116.3 467 28.7
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 6.6e-23 114.4 512 28.1
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 1.1e-22 113.6 353 31.7
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 4.3e-22 111.7 464 28.7
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 6.2e-21 107.8 688 25.6
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 1.1e-20 107.1 462 30.1
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 3.1e-20 105.5 689 25.0
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 4.4e-19 101.7 211 37.9
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.6e-16 93.2 193 35.2
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.1e-16 92.8 193 36.8
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 7.8e-16 90.9 423 28.4
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.9e-14 86.3 169 35.5
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 2.5e-14 85.9 563 27.0
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 5.6e-14 84.7 139 37.4
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-13 83.2 292 28.8
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 2.0e-11 76.3 349 30.4
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 2.2e-10 72.8 408 26.0
HPP92_028524 Vanilla planifolia HOM05D061474 ORTHO05D007753 2.2e-10 72.8 320 29.7
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 4.9e-10 71.6 609 26.1
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 4.9e-10 71.6 234 33.3
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 4.9e-10 71.6 253 29.6
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.4e-09 69.3 91 41.8
Solyc04g010180.4 Solanum lycopersicum HOM05D000283 ORTHO05D006673 9.3e-09 67.4 105 39.0
HPP92_028535 Vanilla planifolia HOM05D061474 ORTHO05D007753 1.2e-08 67.0 280 29.6
Oeu025165.1 Olea europaea HOM05D008194 ORTHO05D010811 4.6e-08 65.1 194 28.9
Oeu025164.1 Olea europaea HOM05D000283 ORTHO05D010811 1.0e-07 63.9 332 25.0
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 6.6e-07 61.2 295 31.5
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 6.6e-07 61.2 456 24.6
CDE07G1099 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 2.5e-06 59.3 335 27.2


User provided reference genes

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