Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11445 Nelumbo nucifera HOM05D003772 ORTHO05D004509 2.3e-82 308.9 161 100.0
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 2.1e-40 169.5 151 66.2
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 3.2e-36 155.6 164 60.4
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 6.3e-32 141.4 130 60.8
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 1.8e-31 139.8 118 66.1
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 4.1e-31 138.7 148 56.8
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 9.0e-31 137.5 126 61.1
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 6.5e-29 131.3 123 59.3
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 6.5e-29 131.3 139 52.5
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 8.5e-29 131.0 130 57.7
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 8.5e-29 131.0 130 57.7
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 8.5e-29 131.0 134 56.7
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.5e-28 129.4 147 51.0
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 2.5e-28 129.4 125 56.8
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 4.2e-28 128.6 140 53.6
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 5.5e-28 128.3 145 49.7
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 5.5e-28 128.3 145 49.7
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 7.2e-28 127.9 121 58.7
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 7.2e-28 127.9 148 50.0
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 1.6e-27 126.7 149 49.7
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 1.6e-27 126.7 124 58.1
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 2.1e-27 126.3 123 56.9
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 2.1e-27 126.3 128 55.5
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.7e-27 125.9 123 57.7
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 2.7e-27 125.9 142 50.7
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 2.7e-27 125.9 143 49.7
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 3.6e-27 125.6 134 55.2
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 4.6e-27 125.2 145 49.0
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 4.6e-27 125.2 127 53.5
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 6.1e-27 124.8 149 52.3
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 6.1e-27 124.8 145 49.0
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 7.9e-27 124.4 129 51.9
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 1.0e-26 124.0 145 49.0
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 1.0e-26 124.0 145 49.0
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.0e-26 124.0 143 53.8
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 1.8e-26 123.2 138 51.4
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 1.8e-26 123.2 144 48.6
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.3e-26 122.9 126 56.3
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 2.3e-26 122.9 140 51.4
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 2.3e-26 122.9 124 55.6
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 2.3e-26 122.9 137 50.4
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 3.0e-26 122.5 134 53.0
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 3.9e-26 122.1 126 54.0
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 3.9e-26 122.1 130 52.3
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 5.1e-26 121.7 126 55.6
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 5.1e-26 121.7 126 55.6
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 5.1e-26 121.7 127 52.8
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 6.7e-26 121.3 120 55.0
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 6.7e-26 121.3 144 48.6
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 6.7e-26 121.3 129 54.3
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 8.8e-26 120.9 123 57.7
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 1.5e-25 120.2 148 48.0
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 1.5e-25 120.2 148 48.0
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 1.5e-25 120.2 126 50.8
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 1.9e-25 119.8 126 54.0
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.5e-25 119.4 144 48.6
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 2.5e-25 119.4 147 47.6
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 3.3e-25 119.0 148 50.0
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 3.3e-25 119.0 128 50.8
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 4.3e-25 118.6 120 54.2
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 4.3e-25 118.6 147 48.3
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 5.7e-25 118.2 128 50.8
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 5.7e-25 118.2 120 54.2
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 7.4e-25 117.9 143 48.3
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 9.7e-25 117.5 147 45.6
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 9.7e-25 117.5 135 46.7
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 9.7e-25 117.5 123 52.8
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 9.7e-25 117.5 123 52.8
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 9.7e-25 117.5 123 52.8
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 1.3e-24 117.1 126 51.6
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 1.7e-24 116.7 134 49.3
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 1.7e-24 116.7 152 46.7
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 1.7e-24 116.7 140 48.6
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 2.2e-24 116.3 144 47.2
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 2.2e-24 116.3 125 51.2
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 2.8e-24 115.9 129 51.9
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 2.8e-24 115.9 141 45.4
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 3.7e-24 115.5 144 47.2
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 3.7e-24 115.5 135 48.1
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 4.8e-24 115.2 144 45.1
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 4.8e-24 115.2 121 52.9
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 6.3e-24 114.8 124 54.8
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 6.3e-24 114.8 117 53.8
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 8.2e-24 114.4 150 46.7
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 8.2e-24 114.4 130 50.8
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.1e-23 114.0 128 50.0
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 1.1e-23 114.0 124 51.6
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 1.1e-23 114.0 144 46.5
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 1.4e-23 113.6 137 51.1
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 1.4e-23 113.6 125 51.2
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.8e-23 113.2 139 43.9
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 1.8e-23 113.2 135 47.4
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.8e-23 113.2 135 45.2
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 2.4e-23 112.8 142 45.1
Thhalv10008772m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 2.4e-23 112.8 135 47.4
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 2.4e-23 112.8 122 49.2
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 4.1e-23 112.1 135 46.7
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 4.1e-23 112.1 145 45.5
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 4.1e-23 112.1 145 45.5
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 4.1e-23 112.1 145 45.5
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 4.1e-23 112.1 109 56.9
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 5.3e-23 111.7 135 45.9
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 9.1e-23 110.9 136 44.1
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 9.1e-23 110.9 145 44.8
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 9.1e-23 110.9 145 44.8
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 9.1e-23 110.9 119 53.8
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 1.5e-22 110.2 146 44.5
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 1.5e-22 110.2 146 44.5
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 3.4e-22 109.0 125 46.4
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 4.5e-22 108.6 138 48.6
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 7.7e-22 107.8 139 46.0
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.0e-21 107.5 127 46.5
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 1.0e-21 107.5 139 46.0
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 3.8e-21 105.5 139 45.3
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 3.8e-21 105.5 139 46.0
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 1.1e-20 104.0 127 48.0
HanXRQChr05g0143311 Helianthus annuus HOM05D003772 ORTHO05D004509 1.1e-20 104.0 129 46.5
Nitab4.5_0011784g0020 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.1e-20 104.0 116 52.6
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 1.4e-20 103.6 128 46.9
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 1.4e-20 103.6 128 46.9
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 1.4e-20 103.6 145 46.2
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 1.9e-20 103.2 134 47.8
BcaC09g50489 Brassica carinata HOM05D003772 ORTHO05D004509 2.5e-20 102.8 139 43.9
C01p24810 Brassica napus HOM05D003772 ORTHO05D004509 2.5e-20 102.8 139 43.9
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 2.5e-20 102.8 124 50.0
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 3.2e-20 102.4 139 45.3
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 5.5e-20 101.7 126 48.4
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 7.2e-20 101.3 126 50.8
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 1.2e-19 100.5 149 43.0
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.1e-19 99.8 103 53.4
CDE09G0587 Ceratophyllum demersum HOM05D003772 ORTHO05D004509 2.7e-19 99.4 113 52.2
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 3.6e-19 99.0 139 43.9
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 4.7e-19 98.6 156 40.4
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 4.7e-19 98.6 156 40.4
Aa31LG2G22190 Aethionema arabicum HOM05D003772 ORTHO05D004509 6.1e-19 98.2 126 43.7
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 1.4e-18 97.1 147 46.3
AT4G28340 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.8e-18 96.7 139 43.9
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 2.3e-18 96.3 110 52.7
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 5.1e-18 95.1 131 45.0
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 8.8e-18 94.4 70 68.6
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.1e-17 94.0 70 67.1
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.0e-17 93.2 96 53.1
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 5.7e-17 91.7 104 51.9
Lalb_Chr22g0356581 Lupinus albus HOM05D003772 ORTHO05D004509 1.7e-16 90.1 117 44.4
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 1.7e-16 90.1 70 62.9
Eucgr.A01824 Eucalyptus grandis HOM05D003772 ORTHO05D004509 1.8e-15 86.7 93 55.9
Nn2g11947 Nelumbo nucifera HOM05D003772 ORTHO05D004509 9.1e-15 84.3 61 78.7
Nn4g24929 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.5e-14 83.6 104 52.9
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 3.8e-13 79.0 69 53.6
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 5.0e-13 78.6 126 42.9
BcaC07g38325 Brassica carinata HOM05D003772 ORTHO05D004509 6.5e-13 78.2 128 36.7
C08p10800 Brassica napus HOM05D003772 ORTHO05D004509 6.5e-13 78.2 128 36.7
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 6.5e-13 78.2 70 57.1
Sopen10g004170 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-12 76.6 84 53.6
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 4.7e-11 72.0 68 57.4
HanXRQChr17g0555101 Helianthus annuus HOM05D003772 ORTHO05D004509 1.0e-10 70.9 124 37.9
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 1.8e-10 70.1 63 55.6
Ah.14g082650 Amaranthus hybridus HOM05D003772 ORTHO05D004509 5.2e-10 68.6 69 49.3
DCAR_019180 Daucus carota HOM05D003772 ORTHO05D004509 5.2e-10 68.6 103 42.7
Aqoxy4G00788 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 7.4e-09 64.7 113 34.5
Nn2g13184 Nelumbo nucifera HOM05D003772 ORTHO05D004509 9.7e-09 64.3 59 62.7
SalBow8G1020 Salvia bowleyana HOM05D003772 ORTHO05D004509 9.7e-09 64.3 58 55.2
BolC8t48755H Brassica oleracea HOM05D003772 ORTHO05D004509 1.7e-08 63.5 129 34.9
PGR142G3565 Punica granatum HOM05D003772 ORTHO05D004509 2.2e-08 63.2 110 39.1
Eucgr.K01033 Eucalyptus grandis HOM05D003772 ORTHO05D004509 4.8e-08 62.0 118 38.1
BcaB03g12567 Brassica carinata HOM05D003772 ORTHO05D004509 1.8e-07 60.1 121 36.4
Hma1.2p1_0046F.1_g027100 Hydrangea macrophylla HOM05D003772 ORTHO05D010346 4.1e-07 58.9 59 50.8
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 5.3e-07 58.5 61 47.5
Zm00001eb090900 Zea mays HOM05D003772 ORTHO05D004509 1.2e-06 57.4 68 44.1
Rhsim03G0156600 Rhododendron simsii HOM05D000763 ORTHO05D000599 2.0e-06 56.6 53 62.3
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 5.9e-06 55.1 65 43.1


User provided reference genes

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