Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11364 Nelumbo nucifera HOM05D003187 ORTHO05D003630 2.1e-55 218.8 108 100.0
Nn2g12076 Nelumbo nucifera HOM05D003187 ORTHO05D003630 1.5e-53 212.6 107 98.1
Oeu027845.1 Olea europaea HOM05D003187 ORTHO05D003630 3.2e-48 194.9 107 87.9
QL08p062568 Quercus lobata HOM05D003187 ORTHO05D003630 1.3e-46 189.5 106 87.7
PSO384G1733 Papaver somniferum HOM05D003187 ORTHO05D003630 1.8e-46 189.1 107 86.0
Solyc07g006530.3 Solanum lycopersicum HOM05D003187 ORTHO05D003630 1.8e-46 189.1 106 86.8
Sopen07g002610 Solanum pennellii HOM05D003187 ORTHO05D003630 1.8e-46 189.1 106 86.8
PGSC0003DMG400027451 Solanum tuberosum HOM05D003187 ORTHO05D003630 1.8e-46 189.1 106 86.8
Peaxi162Scf00297g01023 Petunia axillaris HOM05D003187 ORTHO05D003630 2.3e-46 188.7 106 87.7
CAN.G584.39 Capsicum annuum HOM05D003187 ORTHO05D003630 3.0e-46 188.3 106 86.8
CiPaw.05G043000 Carya illinoinensis HOM05D003187 ORTHO05D003630 3.0e-46 188.3 107 86.0
vmacro14468 Vaccinium macrocarpon HOM05D003187 ORTHO05D003630 3.0e-46 188.3 107 86.9
PSO339G2876 Papaver somniferum HOM05D003187 ORTHO05D003630 3.9e-46 188.0 107 85.0
Sed0019761 Sechium edule HOM05D003187 ORTHO05D003630 3.9e-46 188.0 107 86.0
arahy.Tifrunner.gnm1.ann1.GJ5BI6 Arachis hypogaea HOM05D003187 ORTHO05D003630 5.1e-46 187.6 107 86.0
arahy.Tifrunner.gnm1.ann1.K3QQ9E Arachis hypogaea HOM05D003187 ORTHO05D003630 5.1e-46 187.6 107 86.0
arahy.Tifrunner.gnm1.ann1.P69V6G Arachis hypogaea HOM05D003187 ORTHO05D003630 5.1e-46 187.6 107 86.0
Nitab4.5_0000244g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 5.1e-46 187.6 106 86.8
MELO3C025148.2 Cucumis melo HOM05D003187 ORTHO05D003630 6.7e-46 187.2 107 86.0
Glyma.14G062500 Glycine max HOM05D003187 ORTHO05D003630 6.7e-46 187.2 106 87.7
Lalb_Chr10g0104991 Lupinus albus HOM05D003187 ORTHO05D003630 6.7e-46 187.2 107 86.0
Nitab4.5_0008689g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 6.7e-46 187.2 106 85.8
CsaV3_5G008870 Cucumis sativus L. HOM05D003187 ORTHO05D003630 8.7e-46 186.8 107 85.0
Nitab4.5_0009672g0030 Nicotiana tabacum HOM05D003187 ORTHO05D003630 8.7e-46 186.8 106 86.8
Sabra10G0148900 Salix brachista HOM05D003187 ORTHO05D003630 8.7e-46 186.8 106 88.7
MBI17_g24519_MAGBIO Magnolia biondii HOM05D003187 ORTHO05D003630 1.1e-45 186.4 107 86.9
Potri.010G193400 Populus trichocarpa HOM05D003187 ORTHO05D003630 1.1e-45 186.4 106 87.7
arahy.Tifrunner.gnm1.ann1.0XII0R Arachis hypogaea HOM05D003187 ORTHO05D003630 1.5e-45 186.0 107 85.0
VMungo0647G1330 Vigna mungo HOM05D003187 ORTHO05D003630 1.5e-45 186.0 107 84.1
Migut.F00885 Erythranthe guttata HOM05D003187 ORTHO05D003630 1.9e-45 185.7 105 85.7
Phvul.008G226900 Phaseolus vulgaris HOM05D003187 ORTHO05D003630 1.9e-45 185.7 107 85.0
Sc17g0002050 Simmondsia chinensis HOM05D003187 ORTHO05D003630 1.9e-45 185.7 107 86.9
Dinv20950 Davidia involucrata HOM05D003187 ORTHO05D003630 2.5e-45 185.3 107 85.0
Dinv20993 Davidia involucrata HOM05D003187 ORTHO05D003630 2.5e-45 185.3 107 85.0
Manes.07G124700 Manihot esculenta HOM05D003187 ORTHO05D003630 2.5e-45 185.3 107 86.9
CiPaw.06G148700 Carya illinoinensis HOM05D003187 ORTHO05D003630 3.3e-45 184.9 107 85.0
Dinv34429 Davidia involucrata HOM05D003187 ORTHO05D003630 3.3e-45 184.9 107 84.1
ClCG07G003910 Citrullus lanatus HOM05D003187 ORTHO05D003630 4.3e-45 184.5 107 85.0
LjContig00357g0016423 Lotus japonicus HOM05D003187 ORTHO05D003630 4.3e-45 184.5 106 84.9
Thecc.10G027100 Theobroma cacao HOM05D003187 ORTHO05D003630 4.3e-45 184.5 107 86.9
ATR0026G045 Amborella trichopoda HOM05D003187 ORTHO05D003630 5.6e-45 184.1 106 81.1
CDE04G1847 Ceratophyllum demersum HOM05D003187 ORTHO05D003630 5.6e-45 184.1 107 83.2
CDE12G0549 Ceratophyllum demersum HOM05D003187 ORTHO05D003630 5.6e-45 184.1 107 83.2
GSVIVG01016375001 Vitis vinifera HOM05D003187 ORTHO05D003630 5.6e-45 184.1 107 86.9
CANSAT80G1383 Cannabis sativa HOM05D003187 ORTHO05D003630 7.4e-45 183.7 107 85.0
Haze_17177 Corylus avellana HOM05D003187 ORTHO05D003630 7.4e-45 183.7 105 85.7
HanXRQChr14g0459901 Helianthus annuus HOM05D003187 ORTHO05D003630 7.4e-45 183.7 107 84.1
Lj8A73G45 Lonicera japonica HOM05D003187 ORTHO05D003630 7.4e-45 183.7 107 82.2
Peaxi162Scf00457g00110 Petunia axillaris HOM05D003187 ORTHO05D003630 7.4e-45 183.7 106 85.8
CSS0009728 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 9.6e-45 183.3 107 85.0
CSS0010540 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 9.6e-45 183.3 107 85.0
Cc05_g02550 Coffea canephora HOM05D003187 ORTHO05D003630 9.6e-45 183.3 107 84.1
DCAR_011784 Daucus carota HOM05D003187 ORTHO05D003630 9.6e-45 183.3 107 81.3
Eucgr.G03026 Eucalyptus grandis HOM05D003187 ORTHO05D003630 9.6e-45 183.3 107 86.0
Lsat_1_v5_gn_7_58981 Lactuca sativa HOM05D003187 ORTHO05D003630 9.6e-45 183.3 107 83.2
Hund05583 Selenicereus undatus HOM05D003187 ORTHO05D003630 9.6e-45 183.3 107 85.0
SGA_v2.0_scaffold62G21340 Striga asiatica HOM05D003187 ORTHO05D003630 9.6e-45 183.3 107 83.2
Hma1.2p1_0710F.1_g207370 Hydrangea macrophylla HOM05D003187 ORTHO05D003630 1.3e-44 183.0 107 83.2
Medtr7g092860 Medicago truncatula HOM05D003187 ORTHO05D003630 1.3e-44 183.0 106 84.9
Gohir.A05G346100 Gossypium hirsutum HOM05D003187 ORTHO05D003630 1.6e-44 182.6 107 86.0
Gorai.012G075300 Gossypium raimondii HOM05D003187 ORTHO05D003630 1.6e-44 182.6 107 86.0
vmacro10066 Vaccinium macrocarpon HOM05D003187 ORTHO05D003630 1.6e-44 182.6 106 84.9
PGR042G2760 Punica granatum HOM05D003187 ORTHO05D003630 2.1e-44 182.2 107 86.9
SalBow1G1358 Salvia bowleyana HOM05D003187 ORTHO05D003630 2.1e-44 182.2 107 85.0
CANSAT80G0456 Cannabis sativa HOM05D003187 ORTHO05D003630 2.8e-44 181.8 106 84.9
COL.COLO4_25670 Corchorus olitorius HOM05D003187 ORTHO05D003630 2.8e-44 181.8 107 86.0
Duzib114G0739 Durio zibethinus HOM05D003187 ORTHO05D003630 2.8e-44 181.8 107 85.0
Glyma.02G254000 Glycine max HOM05D003187 ORTHO05D003630 2.8e-44 181.8 106 84.9
Prupe.1G197600 Prunus persica HOM05D003187 ORTHO05D003630 2.8e-44 181.8 106 84.0
MD04G1043000 Malus domestica HOM05D003187 ORTHO05D003630 3.7e-44 181.4 107 84.1
Cpa.g.sc19.222 Carica papaya HOM05D003187 ORTHO05D003630 4.8e-44 181.0 106 84.9
Gohir.D04G066500 Gossypium hirsutum HOM05D003187 ORTHO05D003630 4.8e-44 181.0 107 85.0
Rhsim09G0171800 Rhododendron simsii HOM05D003187 ORTHO05D003630 4.8e-44 181.0 118 77.1
TPR.G8049 Trifolium pratense HOM05D003187 ORTHO05D003630 4.8e-44 181.0 107 83.2
TAR369G0547 Trochodendron aralioides HOM05D003187 ORTHO05D003630 4.8e-44 181.0 107 86.0
Ciclev10031157m.g Citrus clementina HOM05D003187 ORTHO05D003630 8.2e-44 180.3 107 85.0
Cc05_g02410 Coffea canephora HOM05D003187 ORTHO05D003630 8.2e-44 180.3 107 81.3
RcHm_v2.0_Chr7g0194071 Rosa chinensis HOM05D003187 ORTHO05D003630 8.2e-44 180.3 106 84.0
Glyma.10G247850 Glycine max HOM05D003187 ORTHO05D003630 1.1e-43 179.9 106 83.0
Cc06_g17320 Coffea canephora HOM05D003187 ORTHO05D003630 1.4e-43 179.5 107 82.2
Psat6g127920 Pisum sativum HOM05D003187 ORTHO05D003630 1.4e-43 179.5 106 83.0
EL10Ac7g17924 Beta vulgaris HOM05D003187 ORTHO05D003630 1.8e-43 179.1 106 84.9
Atru.chr12.251 Acer truncatum HOM05D003187 ORTHO05D003630 2.4e-43 178.7 107 84.1
HanXRQChr07g0202751 Helianthus annuus HOM05D003187 ORTHO05D003630 2.4e-43 178.7 107 80.4
Hund18445 Selenicereus undatus HOM05D003187 ORTHO05D003630 2.4e-43 178.7 107 83.2
Aqoxy6G01396 Aquilegia oxysepala HOM05D003187 ORTHO05D003630 4.0e-43 177.9 106 85.8
AUR62016534 Chenopodium quinoa HOM05D003187 ORTHO05D003630 4.0e-43 177.9 107 82.2
Lsat_1_v5_gn_2_122660 Lactuca sativa HOM05D003187 ORTHO05D003630 4.0e-43 177.9 107 80.4
Prupe.7G059800 Prunus persica HOM05D003187 ORTHO05D003630 4.0e-43 177.9 107 81.3
THA.LOC104806141 Tarenaya hassleriana HOM05D003187 ORTHO05D003630 4.0e-43 177.9 107 84.1
FAN04G2380 Fragaria x ananassa HOM05D003187 ORTHO05D003630 5.3e-43 177.6 106 82.1
FAN08G2825 Fragaria x ananassa HOM05D003187 ORTHO05D003630 5.3e-43 177.6 106 82.1
FAN13G0040 Fragaria x ananassa HOM05D003187 ORTHO05D003630 5.3e-43 177.6 106 82.1
FAN18G0443 Fragaria x ananassa HOM05D003187 ORTHO05D003630 5.3e-43 177.6 106 82.1
FAN18G2229 Fragaria x ananassa HOM05D003187 ORTHO05D003630 5.3e-43 177.6 106 82.1
PRCOL_00002332 Prasinoderma coloniale HOM05D003187 ORTHO05D003630 5.3e-43 177.6 103 78.6
ECA238G3690 Erigeron canadensis HOM05D003187 ORTHO05D003630 6.9e-43 177.2 107 82.2
Medtr5g081750 Medicago truncatula HOM05D003187 ORTHO05D003630 9.0e-43 176.8 105 82.9
Pp3c9_17690 Physcomitrium patens HOM05D003187 ORTHO05D003630 9.0e-43 176.8 103 80.6
AUR62001143 Chenopodium quinoa HOM05D003187 ORTHO05D003630 1.2e-42 176.4 107 82.2
BcaNung02707 Brassica carinata HOM05D003187 ORTHO05D003630 1.5e-42 176.0 107 84.1
C07p49720 Brassica napus HOM05D003187 ORTHO05D003630 1.5e-42 176.0 107 84.1
BolC7t45473H Brassica oleracea HOM05D003187 ORTHO05D003630 1.5e-42 176.0 107 84.1
CARHR225270 Cardamine hirsuta HOM05D003187 ORTHO05D003630 1.5e-42 176.0 107 84.1
Thhalv10025077m.g Eutrema salsugineum HOM05D003187 ORTHO05D003630 1.5e-42 176.0 107 84.1
BcaC06g30583 Brassica carinata HOM05D003187 ORTHO05D003630 2.0e-42 175.6 107 84.1
BcaC09g51513 Brassica carinata HOM05D003187 ORTHO05D003630 2.0e-42 175.6 107 84.1
A01p10400 Brassica napus HOM05D003187 ORTHO05D003630 2.0e-42 175.6 107 84.1
A08p13810 Brassica napus HOM05D003187 ORTHO05D003630 2.0e-42 175.6 107 84.1
C01p12350 Brassica napus HOM05D003187 ORTHO05D003630 2.0e-42 175.6 107 84.1
BolC1t01210H Brassica oleracea HOM05D003187 ORTHO05D003630 2.0e-42 175.6 107 84.1
BraA01t00987Z Brassica rapa HOM05D003187 ORTHO05D003630 2.0e-42 175.6 107 84.1
BraA08t33360Z Brassica rapa HOM05D003187 ORTHO05D003630 2.0e-42 175.6 107 84.1
unitig_27.g25097 Utricularia gibba HOM05D003187 ORTHO05D003630 2.0e-42 175.6 106 80.2
A03p51310 Brassica napus HOM05D003187 ORTHO05D003630 2.6e-42 175.3 107 83.2
BraA03t14212Z Brassica rapa HOM05D003187 ORTHO05D003630 2.6e-42 175.3 107 83.2
Carub.0007s2280 Capsella rubella HOM05D003187 ORTHO05D003630 2.6e-42 175.3 106 84.0
Sp7g15590 Schrenkiella parvula HOM05D003187 ORTHO05D003630 2.6e-42 175.3 107 83.2
FAN06G4812 Fragaria x ananassa HOM05D003187 ORTHO05D003630 3.4e-42 174.9 106 81.1
BcaC01g00541 Brassica carinata HOM05D003187 ORTHO05D003630 4.5e-42 174.5 107 82.2
BolC3t20388H Brassica oleracea HOM05D003187 ORTHO05D003630 4.5e-42 174.5 107 82.2
AL3G37850 Arabidopsis lyrata HOM05D003187 ORTHO05D003630 5.8e-42 174.1 107 83.2
AL7G35850 Arabidopsis lyrata HOM05D003187 ORTHO05D003630 7.6e-42 173.7 106 84.0
AT4G18440 Arabidopsis thaliana HOM05D003187 ORTHO05D003630 7.6e-42 173.7 106 84.0
C03p81220 Brassica napus HOM05D003187 ORTHO05D003630 1.0e-41 173.3 107 81.3
AT1G36280 Arabidopsis thaliana HOM05D003187 ORTHO05D003630 1.3e-41 172.9 107 82.2
FAN10G0795 Fragaria x ananassa HOM05D003187 ORTHO05D003630 2.2e-41 172.2 106 82.1
HPP92_018291 Vanilla planifolia HOM05D003187 ORTHO05D003630 2.9e-41 171.8 107 79.4
Cre13.g565450 Chlamydomonas reinhardtii HOM05D003187 ORTHO05D003630 4.9e-41 171.0 103 75.7
Aa31LG6G1160 Aethionema arabicum HOM05D003187 ORTHO05D003630 1.1e-40 169.9 107 81.3
Os03g0313600 Oryza sativa ssp. japonica HOM05D003187 ORTHO05D003630 1.1e-40 169.9 107 76.6
Zm00001eb015040 Zea mays HOM05D003187 ORTHO05D003630 1.1e-40 169.9 105 76.2
CBR_g16842 Chara braunii HOM05D003187 ORTHO05D003630 1.4e-40 169.5 106 71.7
TWI53G1626 Tripterygium wilfordii HOM05D003187 ORTHO05D003630 1.4e-40 169.5 107 81.3
Mapoly0031s0040 Marchantia polymorpha HOM05D003187 ORTHO05D003630 2.5e-40 168.7 106 77.4
FvH4_5g04980 Fragaria vesca HOM05D003187 ORTHO05D003630 3.2e-40 168.3 106 78.3
Manes.10G018200 Manihot esculenta HOM05D003187 ORTHO05D003630 5.5e-40 167.5 107 81.3
MCO12G170 Micromonas commoda HOM05D003187 ORTHO05D003630 3.5e-39 164.9 106 70.8
AagrBONN_evm.TU.Sc2ySwM_228.2882 Anthoceros agrestis HOM05D003187 ORTHO05D003630 6.0e-39 164.1 106 74.5
FAN03G0133 Fragaria x ananassa HOM05D003187 ORTHO05D003630 7.9e-39 163.7 106 76.4
FvH4_7g08522 Fragaria vesca HOM05D003187 ORTHO05D003630 6.7e-38 160.6 96 81.2
SHI03522 Sapria himalayana HOM05D003187 ORTHO05D003630 6.7e-38 160.6 99 79.8
Actinidia13914 Actinidia chinensis HOM05D003187 ORTHO05D003630 2.8e-36 155.2 97 83.5
Actinidia25354 Actinidia chinensis HOM05D003187 ORTHO05D003630 5.3e-35 151.0 99 79.8
ECA232G0632 Erigeron canadensis HOM05D003187 ORTHO05D003630 1.1e-32 143.3 82 85.4
Cc00_g04440 Coffea canephora HOM05D003187 ORTHO05D003630 2.5e-32 142.1 105 71.4
SEGI_04750 Sequoiadendron giganteum HOM05D003187 ORTHO05D003630 9.3e-32 140.2 82 80.5
HanXRQChr01g0017651 Helianthus annuus HOM05D003187 ORTHO05D003630 1.8e-30 136.0 84 79.8
Actinidia00931 Actinidia chinensis HOM05D003187 ORTHO05D003630 2.3e-30 135.6 107 68.2
SMO356G0706 Selaginella moellendorffii HOM05D003187 ORTHO05D003630 1.1e-29 133.3 103 63.1
BcaB04g18477 Brassica carinata HOM05D003187 ORTHO05D003630 5.3e-27 124.4 86 76.7
RcHm_v2.0_Chr5g0043781 Rosa chinensis HOM05D003187 ORTHO05D003630 7.7e-26 120.6 102 63.7
RcHm_v2.0_Chr5g0043801 Rosa chinensis HOM05D003187 ORTHO05D003630 8.5e-25 117.1 98 62.2
Psat5g091080 Pisum sativum HOM05D003187 ORTHO05D003630 2.5e-24 115.5 69 81.2
Psat6g139960 Pisum sativum HOM05D003187 ORTHO05D003630 2.5e-24 115.5 69 81.2
Nitab4.5_0012646g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 7.9e-23 110.5 59 89.8
Nitab4.5_0007356g0030 Nicotiana tabacum HOM05D003187 ORTHO05D003630 1.4e-22 109.8 106 57.5
FvH4_7g08523 Fragaria vesca HOM05D003187 ORTHO05D003630 5.1e-22 107.8 106 58.5
Ca_05654_v3 Cicer arietinum L. HOM05D003187 ORTHO05D003630 1.7e-20 102.8 60 85.0
CAN.G1271.9 Capsicum annuum HOM05D003187 ORTHO05D003630 2.8e-20 102.1 60 83.3
Zm00001eb297360 Zea mays HOM05D003187 ORTHO05D003630 3.1e-19 98.6 83 59.0
CSS0022977 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 6.9e-19 97.4 57 84.2
FAN10G2756 Fragaria x ananassa HOM05D003187 ORTHO05D003630 6.9e-19 97.4 59 79.7
Zm00001eb319880 Zea mays HOM05D003187 ORTHO05D003630 1.2e-18 96.7 98 52.0
CSS0044344 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 2.0e-18 95.9 57 82.5
BcaC03g16804 Brassica carinata HOM05D003187 ORTHO05D003630 6.5e-17 90.9 92 57.6
Ah.08g214730 Amaranthus hybridus HOM05D003187 ORTHO05D003630 1.4e-16 89.7 93 54.8
HanXRQChr11g0322721 Helianthus annuus HOM05D003187 ORTHO05D003630 3.2e-16 88.6 48 83.3
PSO170G6881 Papaver somniferum HOM05D003187 ORTHO05D003630 4.2e-16 88.2 107 46.7
RcHm_v2.0_Chr7g0186531 Rosa chinensis HOM05D003187 ORTHO05D003630 4.2e-16 88.2 89 51.7
Glyma.20G147852 Glycine max HOM05D003187 ORTHO05D003630 1.8e-14 82.8 57 71.9
Potri.008G063800 Populus trichocarpa HOM05D003256 ORTHO05D005659 9.7e-13 77.0 46 84.8
CARHR224760 Cardamine hirsuta HOM05D003187 ORTHO05D003630 1.4e-11 73.2 79 54.4
Zm00001eb113520 Zea mays HOM05D003187 ORTHO05D003630 7.0e-11 70.9 66 56.1
FAN08G1218 Fragaria x ananassa HOM05D003187 ORTHO05D003630 2.0e-10 69.3 87 42.5
AagrBONN_evm.TU.Sc2ySwM_228.636 Anthoceros agrestis HOM05D003187 ORTHO05D003630 3.5e-10 68.6 44 65.9
FvH4_5g11350 Fragaria vesca HOM05D003187 ORTHO05D003630 5.9e-10 67.8 87 41.4
FAN18G2583 Fragaria x ananassa HOM05D003187 ORTHO05D003630 5.9e-10 67.8 87 41.4
FAN18G3798 Fragaria x ananassa HOM05D003187 ORTHO05D003630 5.9e-10 67.8 87 41.4
ATR0686G248 Amborella trichopoda HOM05D003187 ORTHO05D003630 7.2e-08 60.8 60 55.0
BolC2t10727H Brassica oleracea HOM05D003187 ORTHO05D003630 2.1e-07 59.3 39 76.9


User provided reference genes

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