Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11350 Nelumbo nucifera HOM05D000215 ORTHO05D002239 2.4e-46 188.3 88 100.0
Nn3g21783 Nelumbo nucifera HOM05D000215 ORTHO05D002239 4.2e-38 161.0 88 87.5
Nn3g21091 Nelumbo nucifera HOM05D000215 ORTHO05D002239 4.3e-35 151.0 81 90.1
Nn6g34482 Nelumbo nucifera HOM05D000215 ORTHO05D002239 4.9e-31 137.5 80 78.8
Aqoxy4G00236 Aquilegia oxysepala HOM05D000215 ORTHO05D002239 8.7e-28 126.7 87 71.3
Prupe.4G067800 Prunus persica HOM05D000215 ORTHO05D002239 1.1e-27 126.3 84 73.8
Atru.chr10.1551 Acer truncatum HOM05D000215 ORTHO05D002239 1.5e-27 125.9 83 72.3
COL.COLO4_31220 Corchorus olitorius HOM05D000215 ORTHO05D002239 1.5e-27 125.9 83 72.3
FAN16G1388 Fragaria x ananassa HOM05D000215 ORTHO05D002239 1.5e-27 125.9 84 72.6
RcHm_v2.0_Chr5g0011931 Rosa chinensis HOM05D000215 ORTHO05D002239 1.5e-27 125.9 83 73.5
FvH4_3g07220 Fragaria vesca HOM05D000215 ORTHO05D002239 1.9e-27 125.6 85 70.6
FAN11G1399 Fragaria x ananassa HOM05D000215 ORTHO05D002239 1.9e-27 125.6 85 70.6
TAR626G1211 Trochodendron aralioides HOM05D000215 ORTHO05D002239 1.9e-27 125.6 82 74.4
FAN21G0489 Fragaria x ananassa HOM05D000215 ORTHO05D002239 4.3e-27 124.4 85 70.6
FAN25G0428 Fragaria x ananassa HOM05D000215 ORTHO05D002239 4.3e-27 124.4 84 71.4
MD10G1274600 Malus domestica HOM05D000215 ORTHO05D002239 4.3e-27 124.4 84 72.6
EL10Ac8g19989 Beta vulgaris HOM05D000215 ORTHO05D002239 5.6e-27 124.0 83 69.9
Duzib192G0956 Durio zibethinus HOM05D000215 ORTHO05D002239 5.6e-27 124.0 82 73.2
Thecc.06G164500 Theobroma cacao HOM05D000215 ORTHO05D002239 9.6e-27 123.2 82 72.0
Dinv12742 Davidia involucrata HOM05D000215 ORTHO05D002239 2.8e-26 121.7 82 72.0
CSS0004229 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D002239 4.8e-26 120.9 82 70.7
CSS0018180 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D002239 4.8e-26 120.9 82 70.7
Dinv32330 Davidia involucrata HOM05D000215 ORTHO05D002239 4.8e-26 120.9 83 71.1
CiPaw.10G103600 Carya illinoinensis HOM05D000215 ORTHO05D002239 6.2e-26 120.6 83 69.9
Potri.011G071400 Populus trichocarpa HOM05D000215 ORTHO05D002239 6.2e-26 120.6 82 70.7
QL05p050063 Quercus lobata HOM05D000215 ORTHO05D002239 6.2e-26 120.6 82 70.7
Glyma.13G225900 Glycine max HOM05D000215 ORTHO05D002239 1.1e-25 119.8 82 69.5
AUR62039488 Chenopodium quinoa HOM05D000215 ORTHO05D002239 1.4e-25 119.4 81 70.4
Hma1.2p1_0508F.1_g168700 Hydrangea macrophylla HOM05D000215 ORTHO05D002239 2.4e-25 118.6 82 72.0
arahy.Tifrunner.gnm1.ann1.LM2DEJ Arachis hypogaea HOM05D000215 ORTHO05D002239 3.1e-25 118.2 83 66.3
ClCG03G007420 Citrullus lanatus HOM05D000215 ORTHO05D002239 3.1e-25 118.2 82 69.5
MD00G1008100 Malus domestica HOM05D000215 ORTHO05D002239 3.1e-25 118.2 86 68.6
Peaxi162Scf00112g00072 Petunia axillaris HOM05D000215 ORTHO05D002239 3.1e-25 118.2 82 65.9
Cpa.g.sc124.7 Carica papaya HOM05D000215 ORTHO05D002239 4.0e-25 117.9 83 68.7
CsaV3_1G033060 Cucumis sativus L. HOM05D000215 ORTHO05D002239 4.0e-25 117.9 82 69.5
Potri.004G061800 Populus trichocarpa HOM05D000215 ORTHO05D002239 4.0e-25 117.9 82 68.3
MELO3C002678.2 Cucumis melo HOM05D000215 ORTHO05D002239 5.3e-25 117.5 82 69.5
Medtr2g018010 Medicago truncatula HOM05D000215 ORTHO05D002239 5.3e-25 117.5 82 68.3
arahy.Tifrunner.gnm1.ann1.579CME Arachis hypogaea HOM05D000215 ORTHO05D002239 6.9e-25 117.1 83 66.3
Ca_00476_v3 Cicer arietinum L. HOM05D000215 ORTHO05D002239 6.9e-25 117.1 82 67.1
Gohir.A06G134000 Gossypium hirsutum HOM05D000215 ORTHO05D002239 6.9e-25 117.1 83 67.5
Sed0003900 Sechium edule HOM05D000215 ORTHO05D002239 6.9e-25 117.1 82 67.1
Solyc02g072080.1 Solanum lycopersicum HOM05D000215 ORTHO05D002239 6.9e-25 117.1 82 67.1
Sopen02g021040 Solanum pennellii HOM05D000215 ORTHO05D002239 6.9e-25 117.1 82 67.1
PGSC0003DMG400028462 Solanum tuberosum HOM05D000215 ORTHO05D002239 6.9e-25 117.1 82 67.1
AUR62041812 Chenopodium quinoa HOM05D000215 ORTHO05D002239 9.0e-25 116.7 81 69.1
Gohir.D06G139000 Gossypium hirsutum HOM05D000215 ORTHO05D002239 9.0e-25 116.7 83 67.5
Gorai.010G161700 Gossypium raimondii HOM05D000215 ORTHO05D002239 9.0e-25 116.7 83 67.5
Nitab4.5_0001778g0020 Nicotiana tabacum HOM05D000215 ORTHO05D002239 9.0e-25 116.7 82 65.9
Nitab4.5_0009597g0040 Nicotiana tabacum HOM05D000215 ORTHO05D002239 9.0e-25 116.7 82 65.9
CANSAT35G1651 Cannabis sativa HOM05D000215 ORTHO05D002239 1.2e-24 116.3 83 67.5
Glyma.15G086200 Glycine max HOM05D000215 ORTHO05D002239 1.2e-24 116.3 83 66.3
Ah.09g233210 Amaranthus hybridus HOM05D000215 ORTHO05D002239 1.5e-24 115.9 81 67.9
Cc02_g15710 Coffea canephora HOM05D000215 ORTHO05D002239 1.5e-24 115.9 82 68.3
Cfa001105 Carpinus fangiana HOM05D000215 ORTHO05D002239 2.0e-24 115.5 86 69.8
Haze_05389 Corylus avellana HOM05D000215 ORTHO05D002239 2.0e-24 115.5 86 69.8
CAN.G411.41 Capsicum annuum HOM05D000215 ORTHO05D002239 3.4e-24 114.8 82 65.9
CARHR028670 Cardamine hirsuta HOM05D000215 ORTHO05D002239 3.4e-24 114.8 83 63.9
Phvul.006G171900 Phaseolus vulgaris HOM05D000215 ORTHO05D002239 3.4e-24 114.8 82 67.1
Psat1g194360 Pisum sativum HOM05D000215 ORTHO05D002239 3.4e-24 114.8 82 65.9
VMungo0540G1989 Vigna mungo HOM05D000215 ORTHO05D002239 3.4e-24 114.8 82 64.6
AT1G29340 Arabidopsis thaliana HOM05D000215 ORTHO05D002239 4.5e-24 114.4 84 63.1
Gohir.D10G034700 Gossypium hirsutum HOM05D000215 ORTHO05D002239 4.5e-24 114.4 83 66.3
Gorai.011G036500 Gossypium raimondii HOM05D000215 ORTHO05D002239 4.5e-24 114.4 83 66.3
Ciclev10014430m.g Citrus clementina HOM05D000215 ORTHO05D002239 7.6e-24 113.6 82 68.3
Lj6g0009569 Lotus japonicus HOM05D000215 ORTHO05D002239 7.6e-24 113.6 83 63.9
Sabra04G0041000 Salix brachista HOM05D000215 ORTHO05D002239 7.6e-24 113.6 82 67.1
AL1G43150 Arabidopsis lyrata HOM05D000215 ORTHO05D002239 1.0e-23 113.2 82 64.6
Carub.0001s2756 Capsella rubella HOM05D000215 ORTHO05D002239 1.0e-23 113.2 82 64.6
Duzib160G0259 Durio zibethinus HOM05D000215 ORTHO05D002239 1.0e-23 113.2 82 67.1
Duzib235G1200 Durio zibethinus HOM05D000215 ORTHO05D002239 1.0e-23 113.2 82 67.1
Thhalv10006853m.g Eutrema salsugineum HOM05D000215 ORTHO05D002239 1.0e-23 113.2 82 64.6
Gohir.A10G034000 Gossypium hirsutum HOM05D000215 ORTHO05D002239 1.0e-23 113.2 83 66.3
THA.LOC104820613 Tarenaya hassleriana HOM05D000215 ORTHO05D002239 1.0e-23 113.2 82 65.9
Actinidia35608 Actinidia chinensis HOM05D000215 ORTHO05D002239 1.3e-23 112.8 82 68.3
Gohir.A09G075000 Gossypium hirsutum HOM05D000215 ORTHO05D002239 1.3e-23 112.8 82 65.9
Manes.16G042400 Manihot esculenta HOM05D000215 ORTHO05D002239 1.3e-23 112.8 82 67.1
Manes.17G060000 Manihot esculenta HOM05D000215 ORTHO05D002239 1.3e-23 112.8 82 68.3
Oeu039872.1 Olea europaea HOM05D000215 ORTHO05D002239 1.3e-23 112.8 82 67.1
Dinv24588 Davidia involucrata HOM05D000215 ORTHO05D002239 1.7e-23 112.5 83 67.5
Gohir.D09G074800 Gossypium hirsutum HOM05D000215 ORTHO05D002239 1.7e-23 112.5 82 65.9
Gorai.006G089900 Gossypium raimondii HOM05D000215 ORTHO05D002239 1.7e-23 112.5 82 65.9
Sabra11G0056000 Salix brachista HOM05D000215 ORTHO05D002239 1.7e-23 112.5 82 65.9
Sabra11G0059100 Salix brachista HOM05D000215 ORTHO05D002239 1.7e-23 112.5 82 65.9
Sp1g25290 Schrenkiella parvula HOM05D000215 ORTHO05D002239 1.7e-23 112.5 82 63.4
MSTRG.13237 Avicennia marina HOM05D000215 ORTHO05D002239 2.9e-23 111.7 82 65.9
Ah.14g086950 Amaranthus hybridus HOM05D000215 ORTHO05D002239 3.8e-23 111.3 81 65.4
Lalb_Chr18g0054801 Lupinus albus HOM05D000215 ORTHO05D002239 3.8e-23 111.3 82 65.9
Lalb_Chr21g0313591 Lupinus albus HOM05D000215 ORTHO05D002239 3.8e-23 111.3 82 65.9
MBI06_g18694_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D002239 4.9e-23 110.9 84 63.1
Eucgr.D00434 Eucalyptus grandis HOM05D000215 ORTHO05D002239 6.5e-23 110.5 82 63.4
Rhsim02G0148300 Rhododendron simsii HOM05D000215 ORTHO05D002239 6.5e-23 110.5 84 66.7
THA.LOC104814265 Tarenaya hassleriana HOM05D000215 ORTHO05D002239 6.5e-23 110.5 82 65.9
Lalb_Chr15g0086361 Lupinus albus HOM05D000215 ORTHO05D002239 1.1e-22 109.8 81 64.2
Sc17g0005590 Simmondsia chinensis HOM05D000215 ORTHO05D002239 1.1e-22 109.8 84 63.1
Aa31LG6G6200 Aethionema arabicum HOM05D000215 ORTHO05D002239 1.4e-22 109.4 82 63.4
Glyma.05G162100 Glycine max HOM05D000215 ORTHO05D002239 1.4e-22 109.4 80 70.0
VMungo0759G0001 Vigna mungo HOM05D000215 ORTHO05D002239 1.4e-22 109.4 80 67.5
CSS0025311 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D002239 1.9e-22 109.0 82 63.4
CSS0028963 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D002239 1.9e-22 109.0 82 63.4
Oeu060184.1 Olea europaea HOM05D000215 ORTHO05D002239 1.9e-22 109.0 82 63.4
Sed0005132 Sechium edule HOM05D000215 ORTHO05D002239 2.5e-22 108.6 82 65.9
TWI09G0329 Tripterygium wilfordii HOM05D000215 ORTHO05D002239 2.5e-22 108.6 82 63.4
Oeu040927.1 Olea europaea HOM05D000215 ORTHO05D002239 3.2e-22 108.2 82 63.4
Psat6g023600 Pisum sativum HOM05D000215 ORTHO05D002239 4.2e-22 107.8 82 61.0
Sc05g0006820 Simmondsia chinensis HOM05D000215 ORTHO05D002239 7.1e-22 107.1 82 59.8
Migut.M01002 Erythranthe guttata HOM05D000215 ORTHO05D002239 9.3e-22 106.7 82 62.2
Phvul.002G241800 Phaseolus vulgaris HOM05D000215 ORTHO05D002239 9.3e-22 106.7 80 66.2
Actinidia16767 Actinidia chinensis HOM05D000215 ORTHO05D002239 1.2e-21 106.3 82 63.4
Migut.H01405 Erythranthe guttata HOM05D000215 ORTHO05D002239 1.6e-21 105.9 81 63.0
Glyma.08G119700 Glycine max HOM05D000215 ORTHO05D002239 2.1e-21 105.5 80 66.2
PSO170G2774 Papaver somniferum HOM05D000215 ORTHO05D002239 1.8e-20 102.4 88 56.8
PSO782G2265 Papaver somniferum HOM05D000215 ORTHO05D002239 1.8e-20 102.4 88 56.8
Lsat_1_v5_gn_4_48300 Lactuca sativa HOM05D000215 ORTHO05D002239 3.0e-20 101.7 84 56.0
SGA_v2.0_scaffold106G30606 Striga asiatica HOM05D000215 ORTHO05D002239 5.1e-20 100.9 83 61.4
BcaB03g12156 Brassica carinata HOM05D000215 ORTHO05D002239 6.7e-20 100.5 82 61.0
DCAR_005164 Daucus carota HOM05D000215 ORTHO05D002239 8.7e-20 100.1 81 59.3
SHI21953 Sapria himalayana HOM05D000215 ORTHO05D002239 1.5e-19 99.4 83 60.2
A08p25120 Brassica napus HOM05D000215 ORTHO05D002239 1.9e-19 99.0 82 59.8
BraA08t34467Z Brassica rapa HOM05D000215 ORTHO05D002239 1.9e-19 99.0 82 59.8
C03p75790 Brassica napus HOM05D000215 ORTHO05D002239 3.3e-19 98.2 83 59.0
PGR042G3463 Punica granatum HOM05D000215 ORTHO05D002239 3.3e-19 98.2 86 54.7
Lj1P1176T31 Lonicera japonica HOM05D000215 ORTHO05D002239 4.3e-19 97.8 82 62.2
MSTRG.16172 Avicennia marina HOM05D000215 ORTHO05D002239 5.7e-19 97.4 82 56.1
Lsat_1_v5_gn_7_25401 Lactuca sativa HOM05D000215 ORTHO05D002239 5.7e-19 97.4 82 57.3
Psat1g077400 Pisum sativum HOM05D000215 ORTHO05D002239 5.7e-19 97.4 85 56.5
SalBow8G3340 Salvia bowleyana HOM05D000215 ORTHO05D002239 5.7e-19 97.4 83 55.4
MSTRG.7436 Avicennia marina HOM05D000215 ORTHO05D002239 9.7e-19 96.7 81 59.3
DCAR_027971 Daucus carota HOM05D000215 ORTHO05D002239 1.6e-18 95.9 83 54.2
DCAR_007929 Daucus carota HOM05D000215 ORTHO05D002239 3.7e-18 94.7 82 57.3
ECA236G2405 Erigeron canadensis HOM05D000215 ORTHO05D002239 3.7e-18 94.7 86 52.3
BolC3t19837H Brassica oleracea HOM05D000215 ORTHO05D002239 4.8e-18 94.4 83 57.8
AL4G30190 Arabidopsis lyrata HOM05D000215 ORTHO05D002239 1.8e-17 92.4 83 56.6
BcaC01g00101 Brassica carinata HOM05D000215 ORTHO05D002239 4.1e-17 91.3 83 56.6
SGA_v2.0_scaffold1G00094 Striga asiatica HOM05D000215 ORTHO05D002239 1.2e-16 89.7 85 49.4
MBI07_g00449_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D002239 2.6e-16 88.6 85 52.9
Carub.0004s1592 Capsella rubella HOM05D000215 ORTHO05D002239 4.5e-16 87.8 82 54.9
BcaC06g35425 Brassica carinata HOM05D000215 ORTHO05D002239 5.9e-16 87.4 80 53.8
BcaB03g13891 Brassica carinata HOM05D000215 ORTHO05D002239 7.7e-16 87.0 80 51.2
C07p16330 Brassica napus HOM05D000215 ORTHO05D002239 1.0e-15 86.7 80 53.8
BolC7t42126H Brassica oleracea HOM05D000215 ORTHO05D002239 1.0e-15 86.7 80 53.8
Actinidia24405 Actinidia chinensis HOM05D000215 ORTHO05D002239 8.5e-15 83.6 82 48.8
CARHR128350 Cardamine hirsuta HOM05D000215 ORTHO05D002239 1.4e-14 82.8 84 53.6
BolC4t27831H Brassica oleracea HOM05D000215 ORTHO05D002239 1.9e-14 82.4 81 54.3
C05p28130 Brassica napus HOM05D000215 ORTHO05D002239 3.2e-14 81.6 84 52.4
BolC5t31540H Brassica oleracea HOM05D000215 ORTHO05D002239 3.2e-14 81.6 84 52.4
BraA09t39214Z Brassica rapa HOM05D000215 ORTHO05D002239 7.2e-14 80.5 83 51.8
A09p36960 Brassica napus HOM05D000215 ORTHO05D002239 9.4e-14 80.1 83 48.2
BcaC05g26960 Brassica carinata HOM05D000215 ORTHO05D002239 2.7e-13 78.6 84 51.2
BraA04t18128Z Brassica rapa HOM05D000215 ORTHO05D002239 3.6e-13 78.2 82 54.9
A04p26230 Brassica napus HOM05D000215 ORTHO05D002239 7.9e-13 77.0 82 53.7
CDE10G1179 Ceratophyllum demersum HOM05D000215 ORTHO05D002239 7.9e-13 77.0 82 50.0
C04p63620 Brassica napus HOM05D000215 ORTHO05D002239 2.3e-12 75.5 82 52.4
CDE10G0830 Ceratophyllum demersum HOM05D000215 ORTHO05D002239 2.5e-11 72.0 81 46.9
GSVIVG01021265001 Vitis vinifera HOM05D000215 ORTHO05D002239 7.4e-11 70.5 80 51.2
BcaB07g32528 Brassica carinata HOM05D000215 ORTHO05D002239 1.1e-09 66.6 75 45.3
CDE03G0084 Ceratophyllum demersum HOM05D000215 ORTHO05D002239 1.4e-09 66.2 80 47.5
CDE04G1811 Ceratophyllum demersum HOM05D000215 ORTHO05D002239 5.3e-09 64.3 80 46.2
Lalb_Chr07g0186221 Lupinus albus HOM05D000215 ORTHO05D002239 5.3e-09 64.3 48 68.8
unitig_578.g16464 Utricularia gibba HOM05D000215 ORTHO05D002239 1.2e-08 63.2 80 38.8
SGA_v2.0_scaffold10G05481 Striga asiatica HOM05D000215 ORTHO05D002239 1.5e-08 62.8 46 56.5
HPP92_022986 Vanilla planifolia HOM05D000215 ORTHO05D002239 1.7e-07 59.3 82 46.3
HPP92_007786 Vanilla planifolia HOM05D000215 ORTHO05D002239 1.4e-06 56.2 80 38.8
HPP92_024059 Vanilla planifolia HOM05D000215 ORTHO05D002239 9.4e-06 53.5 80 38.8


User provided reference genes

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