Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 0.0e+00 2576.2 1661 100.0
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 0.0e+00 1468.0 1758 62.9
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 0.0e+00 1080.1 1817 54.8
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 5.9e-250 869.0 1809 48.5
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 2.9e-217 760.4 1718 45.9
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 2.9e-217 760.4 1718 45.9
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 2.9e-217 760.4 1718 45.9
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 1.0e-185 655.6 1835 42.9
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 3.3e-176 624.0 1758 42.7
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 5.8e-173 613.2 1744 39.2
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 1.3e-172 612.1 1761 40.7
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 3.9e-161 573.9 1721 37.7
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 6.6e-161 573.2 1711 41.6
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 1.5e-160 572.0 1739 38.6
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 4.8e-159 567.0 1742 38.9
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 4.9e-156 557.0 1750 41.6
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 2.4e-155 554.7 1688 38.5
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 8.7e-153 546.2 1743 39.6
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.9e-147 528.5 1296 45.3
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 4.3e-144 517.3 1707 40.5
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 1.5e-141 508.8 1718 37.4
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 2.0e-141 508.4 1716 37.0
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 4.5e-141 507.3 1722 37.9
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.3e-140 505.8 1697 38.1
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 5.0e-140 503.8 1278 42.0
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 1.9e-139 501.9 1734 40.2
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 1.9e-136 491.9 1771 37.0
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 9.7e-136 489.6 1689 34.9
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 7.2e-131 473.4 1757 34.4
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 1.8e-129 468.8 1730 38.7
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 5.1e-129 467.2 1771 38.6
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 6.7e-129 466.8 1689 35.3
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 6.9e-126 456.8 1679 36.3
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.6e-122 445.7 1709 34.8
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 2.7e-122 444.9 1720 32.6
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 6.1e-122 443.7 1673 35.0
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 1.0e-121 443.0 1805 39.4
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.1e-121 440.7 1695 33.7
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 6.7e-121 440.3 720 46.5
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 8.8e-121 439.9 1680 35.2
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.1e-120 439.5 1692 33.6
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.2e-119 435.3 1728 34.3
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.4e-118 431.8 1291 35.3
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 4.1e-118 431.0 1721 32.9
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 9.1e-118 429.9 1697 37.4
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 8.5e-116 423.3 1739 36.8
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.2e-111 408.7 1710 33.2
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 9.4e-107 393.3 1156 37.5
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 1.6e-106 392.5 1681 34.0
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 4.0e-105 387.9 1730 32.9
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 9.8e-104 383.3 1691 32.9
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 1.1e-102 379.8 1690 33.6
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 2.0e-101 375.6 1738 34.1
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 2.7e-101 375.2 1692 36.6
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 7.2e-99 367.1 1702 35.5
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 9.4e-99 366.7 1750 33.3
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 7.5e-96 357.1 281 71.5
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 8.3e-95 353.6 1708 35.4
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 9.1e-94 350.1 1691 35.5
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.6e-93 349.4 1181 34.0
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 6.6e-92 344.0 1708 36.7
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 7.2e-91 340.5 1691 30.1
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 1.4e-89 336.3 1691 33.4
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 1.2e-88 333.2 1732 33.8
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.6e-88 332.0 500 62.6
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 8.3e-87 327.0 1698 33.3
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 8.3e-87 327.0 1690 37.2
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 2.4e-86 325.5 1736 33.7
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 3.2e-86 325.1 1665 32.0
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 6.6e-84 317.4 1678 36.2
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 1.1e-83 316.6 1698 30.7
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 1.1e-83 316.6 1722 33.0
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 7.3e-83 313.9 961 41.2
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 1.8e-81 309.3 222 70.7
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 2.0e-80 305.8 1681 35.2
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 5.4e-78 297.7 689 53.4
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 2.3e-76 292.4 1270 32.2
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 3.9e-76 291.6 228 68.0
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 4.3e-75 288.1 229 64.6
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 7.3e-75 287.3 231 67.1
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 8.6e-68 263.8 176 71.6
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 1.5e-67 263.1 244 58.2
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 9.5e-67 260.4 1252 31.1
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 1.4e-65 256.5 1727 30.1
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 2.3e-65 255.8 222 60.8
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 1.2e-64 253.4 140 80.7
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 1.2e-64 253.4 1694 35.2
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 2.2e-63 249.2 1686 34.4
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 3.7e-63 248.4 732 34.7
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.2e-61 243.4 885 36.3
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 4.6e-61 241.5 926 37.0
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 5.1e-60 238.0 224 53.6
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 6.8e-57 227.6 883 36.5
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 1.3e-55 223.4 711 31.9
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 7.1e-54 217.6 1279 29.9
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 3.0e-52 212.2 1718 27.9
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 5.1e-52 211.5 1726 29.5
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 9.6e-51 207.2 1821 31.9
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 2.8e-50 205.7 493 38.5
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 1.9e-46 193.0 186 53.2
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 5.4e-46 191.4 116 76.7
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 4.6e-45 188.3 103 74.8
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 7.9e-45 187.6 176 60.8
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 1.1e-43 183.7 194 51.5
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 7.6e-40 171.0 182 53.3
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 2.2e-39 169.5 578 34.3
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 2.4e-38 166.0 175 48.6
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 2.7e-37 162.5 1284 30.5
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 1.8e-36 159.8 772 28.0
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 1.3e-34 153.7 727 28.1
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 1.6e-34 153.3 225 43.6
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 9.0e-33 147.5 145 51.7
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 5.8e-32 144.8 202 43.1
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.0e-31 144.1 77 81.8
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.0e-31 144.1 77 81.8
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 1.1e-27 130.6 98 67.3
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 1.9e-27 129.8 105 63.8
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 5.7e-27 128.3 389 31.1
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 4.5e-24 118.6 233 38.2
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 4.5e-24 118.6 836 27.3
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 3.0e-20 105.9 55 85.5
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 1.3e-15 90.5 131 35.1
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 2.9e-15 89.4 225 37.8
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 6.5e-15 88.2 202 28.7
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 3.6e-13 82.4 124 32.3
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 4.6e-13 82.0 140 25.0
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 7.9e-13 81.3 114 33.3
CDE09G1325 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 1.4e-12 80.5 142 38.0
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 1.8e-12 80.1 53 67.9
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 3.0e-12 79.3 114 31.6
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 3.9e-12 79.0 163 35.6
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 1.1e-11 77.4 738 31.0
Psat2g109120 Pisum sativum HOM05D005457 ORTHO05D006350 1.1e-09 70.9 205 31.2
Nn2g14614 Nelumbo nucifera HOM05D005457 ORTHO05D006350 6.9e-09 68.2 90 45.6
Psat0s560g0120 Pisum sativum HOM05D005457 ORTHO05D006350 9.1e-09 67.8 162 34.0
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 1.7e-07 63.5 92 35.9
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 3.8e-07 62.4 43 65.1


User provided reference genes

Program Settings