Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.8e-40 168.7 80 100.0
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 3.9e-27 124.4 89 76.4
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 3.0e-19 98.2 89 55.1
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.7e-17 92.4 94 56.4
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 5.9e-15 84.0 93 50.5
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 2.2e-14 82.0 85 54.1
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 3.8e-14 81.3 95 47.4
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 8.5e-14 80.1 85 47.1
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 3.2e-13 78.2 89 49.4
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 4.2e-13 77.8 84 48.8
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 2.7e-12 75.1 93 49.5
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.7e-12 75.1 91 51.6
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 2.7e-12 75.1 93 48.4
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 3.6e-12 74.7 93 49.5
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 6.1e-12 73.9 104 39.4
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 8.0e-12 73.6 92 45.7
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 1.0e-11 73.2 88 52.3
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 1.0e-11 73.2 93 45.2
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 1.0e-11 73.2 90 42.2
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 1.4e-11 72.8 88 46.6
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 1.4e-11 72.8 90 47.8
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 1.4e-11 72.8 95 42.1
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 1.8e-11 72.4 93 46.2
Gohir.D05G169000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.8e-11 72.4 82 46.3
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.8e-11 72.4 96 41.7
Nn4g25531 Nelumbo nucifera HOM05D004838 ORTHO05D005373 3.0e-11 71.6 66 59.1
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 3.0e-11 71.6 96 41.7
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 5.2e-11 70.9 100 43.0
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 5.2e-11 70.9 95 43.2
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 5.2e-11 70.9 92 42.4
Gorai.009G174200 Gossypium raimondii HOM05D004838 ORTHO05D005373 6.7e-11 70.5 82 46.3
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 6.7e-11 70.5 93 43.0
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 1.1e-10 69.7 80 48.8
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 1.1e-10 69.7 84 42.9
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 1.5e-10 69.3 93 41.9
QL05p081093 Quercus lobata HOM05D004838 ORTHO05D005373 1.5e-10 69.3 81 45.7
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.0e-10 68.9 90 44.4
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 2.6e-10 68.6 93 44.1
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 2.6e-10 68.6 88 44.3
Gohir.A05G166000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.3e-10 68.2 82 43.9
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 4.4e-10 67.8 93 41.9
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 5.7e-10 67.4 91 41.8
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 5.7e-10 67.4 93 39.8
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 5.7e-10 67.4 96 45.8
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 5.7e-10 67.4 88 39.8
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 7.5e-10 67.0 93 43.0
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 7.5e-10 67.0 84 44.0
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 9.7e-10 66.6 90 42.2
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 9.7e-10 66.6 85 45.9
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 9.7e-10 66.6 88 45.5
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.3e-09 66.2 93 43.0
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 1.3e-09 66.2 93 44.1
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.7e-09 65.9 86 44.2
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 2.2e-09 65.5 83 45.8
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 2.2e-09 65.5 86 46.5
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 2.8e-09 65.1 85 48.2
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 2.8e-09 65.1 90 40.0
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 2.8e-09 65.1 93 43.0
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 3.7e-09 64.7 90 45.6
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 3.7e-09 64.7 94 40.4
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 3.7e-09 64.7 83 45.8
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 3.7e-09 64.7 90 38.9
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 3.7e-09 64.7 97 37.1
Haze_06585 Corylus avellana HOM05D004838 ORTHO05D005373 4.8e-09 64.3 86 44.2
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 4.8e-09 64.3 94 41.5
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 4.8e-09 64.3 87 40.2
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 6.3e-09 63.9 90 37.8
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 6.3e-09 63.9 85 41.2
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 6.3e-09 63.9 97 37.1
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 6.3e-09 63.9 97 37.1
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 6.3e-09 63.9 98 38.8
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 8.2e-09 63.5 87 44.8
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 8.2e-09 63.5 87 44.8
CDE05G2085 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 8.2e-09 63.5 80 42.5
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 1.1e-08 63.2 91 45.1
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 1.1e-08 63.2 91 38.5
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 1.4e-08 62.8 94 39.4
HPP92_001805 Vanilla planifolia HOM05D004838 ORTHO05D005373 1.4e-08 62.8 85 41.2
Lalb_Chr22g0356341 Lupinus albus HOM05D004838 ORTHO05D005373 1.8e-08 62.4 80 41.2
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 1.8e-08 62.4 88 42.0
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 2.4e-08 62.0 89 44.9
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 2.4e-08 62.0 90 37.8
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 2.4e-08 62.0 92 42.4
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 4.1e-08 61.2 89 43.8
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 4.1e-08 61.2 105 39.0
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 5.3e-08 60.8 91 44.0
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 5.3e-08 60.8 89 38.2
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 7.0e-08 60.5 89 42.7
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 9.1e-08 60.1 90 38.9
ATR0693G174 Amborella trichopoda HOM05D004838 ORTHO05D005373 1.2e-07 59.7 75 45.3
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 1.2e-07 59.7 85 45.9
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 1.2e-07 59.7 92 40.2
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 1.6e-07 59.3 89 41.6
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 2.0e-07 58.9 89 42.7
TAR627G0102 Trochodendron aralioides HOM05D004838 ORTHO05D005373 2.0e-07 58.9 30 83.3
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 2.7e-07 58.5 90 43.3
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 2.7e-07 58.5 90 43.3
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 4.5e-07 57.8 89 41.6
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 4.5e-07 57.8 89 41.6
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 4.5e-07 57.8 89 41.6
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 4.5e-07 57.8 98 33.7
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 4.5e-07 57.8 98 37.8
Lsat_1_v5_gn_3_40521 Lactuca sativa HOM05D000831 ORTHO05D000660 4.5e-07 57.8 88 42.0
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 5.9e-07 57.4 89 39.3
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 5.9e-07 57.4 89 39.3
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 5.9e-07 57.4 89 39.3
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 5.9e-07 57.4 89 39.3
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 5.9e-07 57.4 89 39.3
Nitab4.5_0011184g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 5.9e-07 57.4 72 41.7
Potri.011G042000 Populus trichocarpa HOM05D038532 ORTHO05D005373 5.9e-07 57.4 78 42.3
Thecc.02G170800 Theobroma cacao HOM05D000831 ORTHO05D000660 5.9e-07 57.4 88 39.8
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 7.7e-07 57.0 85 38.8
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 1.0e-06 56.6 89 40.4
Manes.17G033400 Manihot esculenta HOM05D038532 ORTHO05D005373 1.3e-06 56.2 80 40.0
Nitab4.5_0005244g0070 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.3e-06 56.2 68 41.2
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 1.3e-06 56.2 84 42.9
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 1.3e-06 56.2 90 34.4
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 2.2e-06 55.5 88 37.5
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.2e-06 55.5 97 32.0
Sc21g0002500 Simmondsia chinensis HOM05D004838 ORTHO05D005373 2.9e-06 55.1 84 44.0
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 3.8e-06 54.7 93 37.6
COL.COLO4_13654 Corchorus olitorius HOM05D000831 ORTHO05D000660 3.8e-06 54.7 76 42.1
Sc21g0002510 Simmondsia chinensis HOM05D004838 ORTHO05D005373 3.8e-06 54.7 84 44.0
ATR0693G322 Amborella trichopoda HOM05D017888 ORTHO05D009876 5.0e-06 54.3 85 38.8
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 6.5e-06 53.9 102 39.2
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 6.5e-06 53.9 101 38.6


User provided reference genes

Program Settings