Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 0.0e+00 1388.2 918 100.0
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.2e-183 647.9 945 62.4
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.1e-176 624.8 881 57.4
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 4.0e-176 622.9 940 60.1
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.4e-168 597.0 933 58.8
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 4.8e-153 546.2 939 56.5
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 1.1e-141 508.4 942 56.8
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.6e-140 504.6 960 53.1
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 2.9e-134 483.8 934 55.6
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 8.3e-129 465.7 913 55.3
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 8.3e-129 465.7 913 55.3
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 2.2e-126 457.6 950 52.7
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 6.1e-124 449.5 954 52.9
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 2.7e-119 434.1 938 55.2
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 1.7e-118 431.4 913 53.5
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 1.2e-116 425.2 834 52.5
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 4.3e-109 400.2 953 49.6
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 9.5e-109 399.1 952 52.2
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 2.4e-104 384.4 949 46.5
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 1.0e-102 379.0 1004 49.5
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 5.0e-102 376.7 942 49.7
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 4.3e-101 373.6 946 49.0
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 4.0e-99 367.1 989 48.0
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 8.9e-99 365.9 952 48.0
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 1.2e-98 365.5 928 49.1
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 2.2e-89 334.7 923 49.9
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 8.4e-89 332.8 924 48.3
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 1.1e-88 332.4 958 47.5
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 2.7e-87 327.8 926 47.3
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 1.1e-85 322.4 1016 45.9
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 1.9e-85 321.6 965 46.0
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 4.7e-84 317.0 824 46.6
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 3.1e-83 314.3 949 45.7
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 4.0e-83 313.9 286 65.7
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 1.2e-82 312.4 971 46.0
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 3.4e-82 310.8 944 47.4
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 5.8e-82 310.1 930 49.4
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 2.4e-80 304.7 947 44.1
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 4.2e-80 303.9 984 44.3
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 7.1e-80 303.1 231 72.7
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.6e-79 302.0 948 42.5
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 3.5e-79 300.8 972 44.1
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 4.6e-79 300.4 947 48.7
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 3.9e-78 297.4 967 46.3
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 6.6e-78 296.6 984 47.6
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 6.6e-78 296.6 932 48.0
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 8.7e-78 296.2 858 45.1
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 1.9e-77 295.0 985 43.6
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 3.3e-77 294.3 948 43.5
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 8.1e-76 289.7 939 48.5
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.1e-75 289.3 928 46.4
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 1.8e-75 288.5 935 41.8
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 2.4e-75 288.1 982 47.0
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 6.9e-75 286.6 931 46.7
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 9.0e-75 286.2 268 64.2
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 1.2e-74 285.8 955 46.3
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 4.5e-74 283.9 979 45.5
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 7.6e-74 283.1 312 59.0
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 1.7e-73 282.0 272 62.1
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 2.2e-73 281.6 833 51.1
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.8e-73 280.8 935 45.7
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 1.1e-72 279.3 857 47.4
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.4e-72 278.1 936 47.8
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 3.2e-72 277.7 268 62.7
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 4.6e-71 273.9 265 64.5
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 7.9e-71 273.1 980 45.3
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 1.8e-70 271.9 937 47.5
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 1.8e-70 271.9 952 45.2
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 1.1e-69 269.2 937 45.7
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 1.5e-69 268.9 296 59.8
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 1.6e-68 265.4 315 54.9
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 2.8e-68 264.6 272 59.9
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 8.1e-68 263.1 237 65.4
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 5.3e-67 260.4 212 67.9
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 6.9e-67 260.0 271 59.0
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 1.2e-66 259.2 932 35.7
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 1.5e-66 258.8 983 46.0
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 4.5e-66 257.3 244 61.1
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 5.8e-66 256.9 984 43.0
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 1.7e-65 255.4 285 57.2
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 2.2e-65 255.0 163 81.6
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.2e-63 249.2 959 43.9
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 1.8e-62 245.4 995 43.3
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 5.1e-62 243.8 269 58.0
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 8.7e-62 243.0 140 86.4
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 1.1e-61 242.7 967 42.5
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 4.3e-61 240.7 984 44.1
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.3e-60 239.2 272 54.4
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.3e-60 239.2 272 54.4
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 6.2e-60 236.9 923 41.6
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 1.8e-59 235.3 217 61.3
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.8e-59 235.3 947 44.2
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 1.8e-59 235.3 294 53.4
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 9.0e-59 233.0 137 83.9
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 5.8e-58 230.3 276 54.3
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.0e-57 229.6 267 55.4
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 1.7e-57 228.8 276 54.7
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 2.2e-57 228.4 269 56.5
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 6.5e-57 226.9 273 55.7
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 7.1e-56 223.4 865 45.2
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 2.7e-55 221.5 921 44.3
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 4.6e-55 220.7 221 57.5
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 6.0e-55 220.3 131 82.4
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 3.9e-54 217.6 279 53.8
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.9e-54 217.6 271 51.7
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 1.6e-52 212.2 305 49.5
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 2.8e-52 211.5 173 66.5
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 4.8e-52 210.7 846 44.8
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.1e-51 209.5 948 46.0
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 4.1e-51 207.6 228 57.5
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 2.0e-50 205.3 966 42.3
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 3.4e-50 204.5 134 77.6
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 1.0e-46 193.0 158 66.5
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 3.0e-46 191.4 305 47.9
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 1.5e-45 189.1 957 40.9
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 5.7e-45 187.2 945 41.8
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 1.1e-43 183.0 198 53.5
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 1.5e-34 152.5 134 64.2
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 5.9e-34 150.6 139 60.4
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 5.5e-32 144.1 182 48.9
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 2.1e-31 142.1 127 60.6
Nn1g06116 Nelumbo nucifera HOM05D005166 ORTHO05D006120 4.8e-28 131.0 148 56.1
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 3.0e-22 111.7 178 43.3
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 4.4e-21 107.8 146 43.2
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 9.7e-21 106.7 130 55.4
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.4e-19 102.8 86 69.8
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 1.0e-14 86.7 57 75.4
Oeu053892.1 Olea europaea HOM05D005166 ORTHO05D006120 6.8e-14 84.0 427 38.2
Nn3g20459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 3.5e-10 71.6 145 43.4
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 1.7e-09 69.3 505 34.5
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 2.3e-09 68.9 121 36.4
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 5.0e-09 67.8 50 68.0
Nn2g12388 Nelumbo nucifera HOM05D005166 ORTHO05D006120 2.1e-07 62.4 54 66.7
CDE06G2066 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 4.0e-06 58.2 183 41.0
RcHm_v2.0_Chr1g0354421 Rosa chinensis HOM05D005166 ORTHO05D006120 6.8e-06 57.4 53 58.5
RcHm_v2.0_Chr1g0367371 Rosa chinensis HOM05D005166 ORTHO05D006120 6.8e-06 57.4 53 58.5


User provided reference genes

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