Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11114 Nelumbo nucifera HOM05D000334 ORTHO05D000200 2.8e-97 358.6 178 100.0
TAR623G0657 Trochodendron aralioides HOM05D000334 ORTHO05D000200 2.8e-57 225.7 150 74.0
MBI14_g31101_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 8.1e-57 224.2 173 67.1
MBI14_g35406_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 6.9e-56 221.1 164 70.1
TAR633G1689 Trochodendron aralioides HOM05D000334 ORTHO05D000200 2.4e-53 212.6 149 73.2
Dinv03044 Davidia involucrata HOM05D000334 ORTHO05D000200 1.2e-52 210.3 148 70.3
Dinv26017 Davidia involucrata HOM05D000334 ORTHO05D000200 8.7e-51 204.1 148 69.6
ClCG09G019720 Citrullus lanatus HOM05D000334 ORTHO05D000200 1.6e-49 199.9 150 68.0
CSS0007857 Camellia sinensis var. sinensis HOM05D000334 ORTHO05D000200 2.1e-49 199.5 148 67.6
Atru.chr12.447 Acer truncatum HOM05D000334 ORTHO05D000200 3.1e-48 195.7 145 70.3
Cfa001471 Carpinus fangiana HOM05D000334 ORTHO05D000200 4.0e-48 195.3 148 69.6
Hund16086 Selenicereus undatus HOM05D000334 ORTHO05D000200 4.0e-48 195.3 148 66.9
CsaV3_5G026680 Cucumis sativus L. HOM05D000334 ORTHO05D000200 5.3e-48 194.9 148 67.6
Sed0019742 Sechium edule HOM05D000334 ORTHO05D000200 9.0e-48 194.1 150 65.3
PSO339G3241 Papaver somniferum HOM05D000334 ORTHO05D000200 1.5e-47 193.4 148 66.2
Hund13765 Selenicereus undatus HOM05D000334 ORTHO05D000200 4.5e-47 191.8 148 66.2
MELO3C021629.2 Cucumis melo HOM05D000334 ORTHO05D000200 5.8e-47 191.4 148 66.2
CiPaw.01G287600 Carya illinoinensis HOM05D000334 ORTHO05D000200 7.6e-47 191.0 148 67.6
Sed0007313 Sechium edule HOM05D000334 ORTHO05D000200 1.3e-46 190.3 148 66.2
Ciclev10032209m.g Citrus clementina HOM05D000334 ORTHO05D000200 1.7e-46 189.9 142 70.4
Actinidia02946 Actinidia chinensis HOM05D000334 ORTHO05D000200 2.9e-46 189.1 148 64.9
PSO384G4686 Papaver somniferum HOM05D000334 ORTHO05D000200 3.8e-46 188.7 148 65.5
MBI05_g22029_MAGBIO Magnolia biondii HOM05D000334 ORTHO05D000200 6.4e-46 188.0 135 73.3
Haze_17069 Corylus avellana HOM05D000334 ORTHO05D000200 1.9e-45 186.4 149 67.8
CiPaw.02G184100 Carya illinoinensis HOM05D000334 ORTHO05D000200 2.4e-45 186.0 148 66.2
Lj1A937T98 Lonicera japonica HOM05D000334 ORTHO05D000200 2.4e-45 186.0 163 61.3
ATR0559G279 Amborella trichopoda HOM05D000334 ORTHO05D000200 4.2e-45 185.3 148 66.9
Prupe.2G235800 Prunus persica HOM05D000334 ORTHO05D000200 5.5e-45 184.9 149 63.8
Sabra08G0040800 Salix brachista HOM05D000334 ORTHO05D000200 2.7e-44 182.6 148 70.3
Sc10g0001600 Simmondsia chinensis HOM05D000334 ORTHO05D000200 3.5e-44 182.2 149 63.8
Aqoxy2G02141 Aquilegia oxysepala HOM05D000334 ORTHO05D000200 6.0e-44 181.4 134 67.9
Cpa.g.sc1.408 Carica papaya HOM05D000334 ORTHO05D000200 6.0e-44 181.4 160 63.8
ECA238G1298 Erigeron canadensis HOM05D000334 ORTHO05D000200 1.8e-43 179.9 156 64.1
Lsat_1_v5_gn_2_119201 Lactuca sativa HOM05D000334 ORTHO05D000200 1.8e-43 179.9 160 62.5
Gohir.A05G349300 Gossypium hirsutum HOM05D000334 ORTHO05D000200 3.0e-43 179.1 121 76.0
TWI63G1067 Tripterygium wilfordii HOM05D000334 ORTHO05D000200 3.9e-43 178.7 155 65.8
MD07G1198900 Malus domestica HOM05D000334 ORTHO05D000200 5.1e-43 178.3 149 62.4
Nn2g13347 Nelumbo nucifera HOM05D000334 ORTHO05D000200 6.7e-43 177.9 108 84.3
PSO151G0125 Papaver somniferum HOM05D000334 ORTHO05D000200 6.7e-43 177.9 119 73.9
Potri.010G203700 Populus trichocarpa HOM05D000334 ORTHO05D000200 6.7e-43 177.9 146 69.2
Thecc.10G041600 Theobroma cacao HOM05D000334 ORTHO05D000200 1.1e-42 177.2 120 75.8
HanXRQChr14g0457991 Helianthus annuus HOM05D000334 ORTHO05D000200 1.5e-42 176.8 157 61.8
PSO339G4065 Papaver somniferum HOM05D000334 ORTHO05D000200 1.5e-42 176.8 119 73.1
Rhsim03G0130500 Rhododendron simsii HOM05D000334 ORTHO05D000200 1.5e-42 176.8 154 64.3
Ah.16g102330 Amaranthus hybridus HOM05D000334 ORTHO05D000200 2.5e-42 176.0 149 65.1
Gohir.D04G063000 Gossypium hirsutum HOM05D000334 ORTHO05D000200 2.5e-42 176.0 121 75.2
Gorai.012G070400 Gossypium raimondii HOM05D000334 ORTHO05D000200 2.5e-42 176.0 121 75.2
Potri.008G056100 Populus trichocarpa HOM05D000334 ORTHO05D000200 3.3e-42 175.6 148 68.2
Sabra10G0157200 Salix brachista HOM05D000334 ORTHO05D000200 3.3e-42 175.6 147 67.3
HanXRQChr02g0037491 Helianthus annuus HOM05D000334 ORTHO05D000200 4.3e-42 175.3 160 61.9
Actinidia29228 Actinidia chinensis HOM05D000334 ORTHO05D000200 5.6e-42 174.9 150 63.3
CANSAT56G1569 Cannabis sativa HOM05D000334 ORTHO05D000200 7.4e-42 174.5 148 63.5
CANSAT56G3888 Cannabis sativa HOM05D000334 ORTHO05D000200 7.4e-42 174.5 148 63.5
FvH4_7g22510 Fragaria vesca HOM05D000334 ORTHO05D000200 7.4e-42 174.5 149 63.8
FAN01G1536 Fragaria x ananassa HOM05D000334 ORTHO05D000200 7.4e-42 174.5 149 63.8
FAN06G2773 Fragaria x ananassa HOM05D000334 ORTHO05D000200 7.4e-42 174.5 149 63.8
FAN06G4615 Fragaria x ananassa HOM05D000334 ORTHO05D000200 7.4e-42 174.5 149 63.8
PGR044G0712 Punica granatum HOM05D000334 ORTHO05D000200 7.4e-42 174.5 149 64.4
ECA240G1439 Erigeron canadensis HOM05D000334 ORTHO05D000200 1.3e-41 173.7 150 64.0
FAN01G1756 Fragaria x ananassa HOM05D000334 ORTHO05D000200 1.3e-41 173.7 149 63.8
QL08p059708 Quercus lobata HOM05D000334 ORTHO05D000200 1.6e-41 173.3 153 61.4
FAN10G1791 Fragaria x ananassa HOM05D000334 ORTHO05D000200 2.1e-41 172.9 149 63.1
Glyma.02G091500 Glycine max HOM05D000334 ORTHO05D000200 2.8e-41 172.6 149 65.1
MD01G1134400 Malus domestica HOM05D000334 ORTHO05D000200 2.8e-41 172.6 149 62.4
AUR62039376 Chenopodium quinoa HOM05D000334 ORTHO05D000200 3.7e-41 172.2 169 58.6
Duzib106G1737 Durio zibethinus HOM05D000334 ORTHO05D000200 3.7e-41 172.2 121 73.6
Ah.10g037240 Amaranthus hybridus HOM05D000334 ORTHO05D000200 4.8e-41 171.8 149 58.4
RcHm_v2.0_Chr1g0367191 Rosa chinensis HOM05D000334 ORTHO05D000200 4.8e-41 171.8 150 64.0
Actinidia13880 Actinidia chinensis HOM05D000334 ORTHO05D000200 6.2e-41 171.4 150 62.7
EL10Ac2g04747 Beta vulgaris HOM05D000334 ORTHO05D000200 8.2e-41 171.0 149 63.1
Duzib114G0862 Durio zibethinus HOM05D000334 ORTHO05D000200 1.1e-40 170.6 121 71.9
Glyma.18G291600 Glycine max HOM05D000334 ORTHO05D000200 1.1e-40 170.6 149 63.1
arahy.Tifrunner.gnm1.ann1.0GZ2Z9 Arachis hypogaea HOM05D000334 ORTHO05D000200 1.4e-40 170.2 160 59.4
arahy.Tifrunner.gnm1.ann1.EFAC5F Arachis hypogaea HOM05D000334 ORTHO05D000200 1.4e-40 170.2 160 59.4
Actinidia23937 Actinidia chinensis HOM05D000334 ORTHO05D000200 2.4e-40 169.5 158 56.3
Manes.10G030100 Manihot esculenta HOM05D000334 ORTHO05D000200 2.4e-40 169.5 145 65.5
vmacro10231 Vaccinium macrocarpon HOM05D000334 ORTHO05D000200 3.1e-40 169.1 150 65.3
Lj1g0026177 Lotus japonicus HOM05D000334 ORTHO05D000200 5.3e-40 168.3 150 61.3
Lalb_Chr10g0091601 Lupinus albus HOM05D000334 ORTHO05D000200 6.9e-40 167.9 150 62.0
GSVIVG01016558001 Vitis vinifera HOM05D000334 ORTHO05D000200 6.9e-40 167.9 109 76.1
Eucgr.J00012 Eucalyptus grandis HOM05D000334 ORTHO05D000200 9.0e-40 167.5 143 63.6
VMungo1383G3197 Vigna mungo HOM05D000334 ORTHO05D000200 9.0e-40 167.5 149 61.1
MSTRG.288 Avicennia marina HOM05D000334 ORTHO05D000200 1.2e-39 167.2 150 62.0
Gohir.D10G228900 Gossypium hirsutum HOM05D000334 ORTHO05D000200 1.2e-39 167.2 121 72.7
Gorai.011G261400 Gossypium raimondii HOM05D000334 ORTHO05D000200 1.2e-39 167.2 121 72.7
FAN03G2662 Fragaria x ananassa HOM05D000334 ORTHO05D000200 2.0e-39 166.4 149 61.1
Gohir.A10G219400 Gossypium hirsutum HOM05D000334 ORTHO05D000200 2.6e-39 166.0 121 71.9
Phvul.008G010300 Phaseolus vulgaris HOM05D000334 ORTHO05D000200 3.4e-39 165.6 149 60.4
vmacro07172 Vaccinium macrocarpon HOM05D000334 ORTHO05D000200 7.6e-39 164.5 148 62.2
Migut.F01492 Erythranthe guttata HOM05D000334 ORTHO05D000200 4.2e-37 158.7 123 69.1
Nitab4.5_0000272g0190 Nicotiana tabacum HOM05D000334 ORTHO05D000200 4.2e-37 158.7 148 59.5
Rhsim09G0166100 Rhododendron simsii HOM05D000334 ORTHO05D000200 5.5e-37 158.3 149 61.1
COL.COLO4_15047 Corchorus olitorius HOM05D000334 ORTHO05D000200 9.3e-37 157.5 110 74.5
Medtr7g083080 Medicago truncatula HOM05D000334 ORTHO05D000200 1.6e-36 156.8 160 56.9
CSS0024615 Camellia sinensis var. sinensis HOM05D000334 ORTHO05D000200 2.7e-36 156.0 119 66.4
CARHR134490 Cardamine hirsuta HOM05D000334 ORTHO05D000200 2.7e-36 156.0 123 66.7
DCAR_027618 Daucus carota HOM05D000334 ORTHO05D000200 3.5e-36 155.6 121 70.2
Nitab4.5_0002836g0040 Nicotiana tabacum HOM05D000334 ORTHO05D000200 7.9e-36 154.5 167 55.1
AL4G37060 Arabidopsis lyrata HOM05D000334 ORTHO05D000200 1.0e-35 154.1 124 66.1
Thhalv10017011m.g Eutrema salsugineum HOM05D000334 ORTHO05D000200 1.8e-35 153.3 130 62.3
Psat3g096080 Pisum sativum HOM05D000334 ORTHO05D000200 1.8e-35 153.3 160 56.9
Ca_08105_v3 Cicer arietinum L. HOM05D000334 ORTHO05D000200 2.3e-35 152.9 162 56.2
Sp4g21910 Schrenkiella parvula HOM05D000334 ORTHO05D000200 3.9e-35 152.1 128 62.5
Carub.0004s2169 Capsella rubella HOM05D000334 ORTHO05D000200 1.5e-34 150.2 125 64.8
Lj1C152T5 Lonicera japonica HOM05D000334 ORTHO05D000200 1.5e-34 150.2 135 61.5
Sopen06g001460 Solanum pennellii HOM05D000334 ORTHO05D000200 5.7e-34 148.3 146 55.5
AUR62012090 Chenopodium quinoa HOM05D000334 ORTHO05D000200 9.7e-34 147.5 109 70.6
Cc02_g07830 Coffea canephora HOM05D000334 ORTHO05D000200 6.3e-33 144.8 110 70.9
Solyc06g005480.3 Solanum lycopersicum HOM05D000334 ORTHO05D000200 8.2e-33 144.4 136 57.4
SGA_v2.0_scaffold2G01003 Striga asiatica HOM05D000334 ORTHO05D000200 8.2e-33 144.4 150 56.0
Os01g0973600 Oryza sativa ssp. japonica HOM05D000334 ORTHO05D000200 1.1e-32 144.1 170 52.9
BcaC01g05483 Brassica carinata HOM05D000334 ORTHO05D000200 2.4e-32 142.9 128 60.9
C03p26260 Brassica napus HOM05D000334 ORTHO05D000200 2.4e-32 142.9 128 60.9
BolC3t15011H Brassica oleracea HOM05D000334 ORTHO05D000200 2.4e-32 142.9 128 60.9
A03p22180 Brassica napus HOM05D000334 ORTHO05D000200 4.1e-32 142.1 128 60.2
BraA03t11450Z Brassica rapa HOM05D000334 ORTHO05D000200 4.1e-32 142.1 128 60.2
SalBow2G2104 Salvia bowleyana HOM05D000334 ORTHO05D000200 4.1e-32 142.1 142 54.9
MSTRG.12649 Avicennia marina HOM05D000334 ORTHO05D000200 5.3e-32 141.7 127 59.1
THA.LOC104810030 Tarenaya hassleriana HOM05D000334 ORTHO05D000200 2.6e-31 139.4 152 53.3
Peaxi162Scf00587g00057 Petunia axillaris HOM05D000334 ORTHO05D000200 5.9e-31 138.3 122 63.1
PGSC0003DMG400009671 Solanum tuberosum HOM05D000334 ORTHO05D000200 5.9e-31 138.3 136 55.1
CDE08G0151 Ceratophyllum demersum HOM05D002988 ORTHO05D003479 2.9e-30 136.0 118 61.0
Zm00001eb139770 Zea mays HOM05D000334 ORTHO05D000200 1.4e-29 133.7 177 44.6
CDE02G4013 Ceratophyllum demersum HOM05D000334 ORTHO05D000200 1.2e-28 130.6 124 56.5
Oeu019191.1 Olea europaea HOM05D000334 ORTHO05D000200 1.2e-28 130.6 162 50.6
Migut.N00916 Erythranthe guttata HOM05D000334 ORTHO05D000200 1.6e-28 130.2 143 53.8
Oeu064377.1 Olea europaea HOM05D000334 ORTHO05D000200 7.9e-28 127.9 109 65.1
CSS0012213 Camellia sinensis var. sinensis HOM05D000334 ORTHO05D000200 1.3e-27 127.1 119 58.0
Aa31LG5G20000 Aethionema arabicum HOM05D000334 ORTHO05D000200 8.8e-27 124.4 174 46.6
CAN.G111.46 Capsicum annuum HOM05D000334 ORTHO05D000200 8.8e-27 124.4 111 57.7
SEGI_12929 Sequoiadendron giganteum HOM05D000334 ORTHO05D000200 3.4e-23 112.5 121 49.6
SEGI_40288 Sequoiadendron giganteum HOM05D000334 ORTHO05D000200 3.4e-23 112.5 121 49.6
Actinidia34408 Actinidia chinensis HOM05D000334 ORTHO05D000200 1.6e-20 103.6 120 51.7
AT2G39650 Arabidopsis thaliana HOM05D000334 ORTHO05D000200 2.7e-20 102.8 73 68.5
unitig_6.g29270 Utricularia gibba HOM05D000334 ORTHO05D000200 6.9e-16 88.2 119 43.7
unitig_747.g21431 Utricularia gibba HOM05D000334 ORTHO05D000200 6.9e-16 88.2 119 43.7
TPR.G28462 Trifolium pratense HOM05D000334 ORTHO05D000200 1.2e-15 87.4 74 55.4
SEGI_28707 Sequoiadendron giganteum HOM05D000334 ORTHO05D000200 8.5e-14 81.3 122 35.2
Mapoly0010s0065 Marchantia polymorpha HOM05D000334 ORTHO05D000200 3.6e-12 75.9 123 39.8
Thecc.10G041800 Theobroma cacao HOM05D000334 ORTHO05D000200 1.4e-11 73.9 49 73.5
HPP92_026927 Vanilla planifolia HOM05D000334 ORTHO05D000200 1.4e-11 73.9 60 61.7
Pp3c8_20660 Physcomitrium patens HOM05D000334 ORTHO05D000200 3.3e-10 69.3 133 36.1
Pp3c23_16860 Physcomitrium patens HOM05D000334 ORTHO05D000200 4.4e-10 68.9 128 36.7
Pp3c8_20290 Physcomitrium patens HOM05D000334 ORTHO05D000200 9.7e-10 67.8 125 36.8
PSO423G0266 Papaver somniferum HOM05D000949 ORTHO05D009565 1.4e-08 63.9 53 66.0
Pp3c20_10330 Physcomitrium patens HOM05D000334 ORTHO05D000200 1.8e-08 63.5 133 35.3
Pp3c22_21850 Physcomitrium patens HOM05D000334 ORTHO05D000200 2.4e-08 63.2 125 36.8
TPR.G34674 Trifolium pratense HOM05D000334 ORTHO05D000200 3.1e-08 62.8 57 68.4
Pp3c19_8890 Physcomitrium patens HOM05D000334 ORTHO05D000200 4.1e-08 62.4 122 36.1
Pp3c24_19270 Physcomitrium patens HOM05D000334 ORTHO05D000200 5.3e-08 62.0 113 36.3
Pp3c20_1940 Physcomitrium patens HOM05D000334 ORTHO05D000200 2.0e-07 60.1 116 33.6
A05p06790 Brassica napus HOM05D000334 ORTHO05D000200 7.7e-07 58.2 56 50.0
SEGI_21921 Sequoiadendron giganteum HOM05D000334 ORTHO05D000200 7.7e-07 58.2 116 36.2
Pp3c23_20370 Physcomitrium patens HOM05D000334 ORTHO05D000200 1.0e-06 57.8 122 32.0
Pp3c18_2600 Physcomitrium patens HOM05D000334 ORTHO05D000200 1.7e-06 57.0 122 35.2


User provided reference genes

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