Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 8.8e-176 620.2 307 100.0
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 1.2e-127 460.3 299 76.9
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 1.0e-123 447.2 299 75.3
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 1.1e-101 374.0 325 63.1
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 3.4e-95 352.4 299 61.2
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 3.8e-94 349.0 308 59.4
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 3.0e-91 339.3 300 57.7
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 1.1e-90 337.4 305 57.0
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 1.3e-89 334.0 298 59.4
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 3.6e-89 332.4 304 56.6
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 1.1e-88 330.9 305 57.4
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 5.3e-88 328.6 308 56.8
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 4.5e-87 325.5 306 56.9
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 1.3e-86 323.9 314 55.7
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 1.1e-85 320.9 302 55.6
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 5.5e-85 318.5 311 54.7
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 4.3e-82 308.9 304 54.9
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 9.6e-82 307.8 299 52.8
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 8.1e-81 304.7 301 55.8
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 1.2e-79 300.8 303 53.5
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 4.5e-79 298.9 296 55.1
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 4.5e-79 298.9 296 55.4
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 7.6e-79 298.1 308 52.6
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 1.3e-78 297.4 307 53.4
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 1.7e-78 297.0 301 55.1
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 2.9e-78 296.2 301 54.2
Gohir.D01G219700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 3.8e-78 295.8 303 54.8
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 6.5e-78 295.0 303 54.8
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 6.5e-78 295.0 304 51.6
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 8.4e-78 294.7 303 53.8
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 1.9e-77 293.5 329 52.0
Sed0019485 Sechium edule HOM05D006207 ORTHO05D007868 1.9e-77 293.5 307 52.1
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 2.5e-77 293.1 302 53.0
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 2.5e-77 293.1 301 54.2
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 4.2e-77 292.4 305 51.5
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 7.1e-77 291.6 301 53.5
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 9.3e-77 291.2 314 55.4
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 4.6e-76 288.9 301 52.5
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 7.9e-76 288.1 302 54.0
PSO765G0078 Papaver somniferum HOM05D006207 ORTHO05D007868 7.9e-76 288.1 307 52.8
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 1.3e-75 287.3 305 53.1
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 3.0e-75 286.2 297 50.5
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 2.5e-74 283.1 301 53.2
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 5.7e-74 282.0 298 50.3
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 9.6e-74 281.2 306 52.0
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 1.3e-73 280.8 301 50.5
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 1.3e-73 280.8 326 50.6
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 1.3e-73 280.8 305 49.5
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 1.3e-73 280.8 305 53.1
Potri.016G126200 Populus trichocarpa HOM05D006207 ORTHO05D007868 1.6e-73 280.4 305 51.1
Sp3g07200 Schrenkiella parvula HOM05D006207 ORTHO05D007868 6.3e-73 278.5 299 50.2
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 2.4e-72 276.6 319 49.5
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 4.1e-72 275.8 302 53.0
Carub.0003s0791 Capsella rubella HOM05D006207 ORTHO05D007868 6.9e-72 275.0 301 50.5
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 9.0e-72 274.6 301 49.8
AL3G19780 Arabidopsis lyrata HOM05D006207 ORTHO05D007868 1.2e-71 274.2 299 50.2
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 1.2e-71 274.2 302 52.3
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 5.9e-71 271.9 311 50.2
MBI03_g07303_MAGBIO Magnolia biondii HOM05D006207 ORTHO05D007868 7.6e-71 271.6 303 51.5
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 1.3e-70 270.8 303 48.5
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 1.3e-70 270.8 305 47.9
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 1.3e-70 270.8 299 49.2
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 2.9e-70 269.6 302 51.0
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 3.8e-70 269.2 305 49.5
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 1.1e-69 267.7 310 48.7
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 1.4e-69 267.3 320 48.8
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 2.5e-69 266.5 310 48.7
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 3.2e-69 266.2 297 49.8
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 4.2e-69 265.8 307 50.8
CARHR083100 Cardamine hirsuta HOM05D006207 ORTHO05D007868 6.1e-68 261.9 301 49.2
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 1.3e-67 260.8 304 47.7
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 1.3e-67 260.8 305 46.6
A05p40020 Brassica napus HOM05D006207 ORTHO05D007868 5.1e-67 258.8 301 48.2
BolC5t34558H Brassica oleracea HOM05D006207 ORTHO05D007868 6.7e-67 258.5 304 48.4
SHI12871 Sapria himalayana HOM05D006207 ORTHO05D007868 1.1e-66 257.7 314 45.5
BraA05t22911Z Brassica rapa HOM05D006207 ORTHO05D007868 1.9e-66 256.9 302 47.7
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 3.3e-66 256.1 301 47.5
CDE06G0694 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 7.4e-66 255.0 296 50.7
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 7.4e-66 255.0 301 47.8
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 1.8e-64 250.4 304 48.4
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 1.2e-63 247.7 304 47.4
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 6.5e-62 241.9 297 44.1
FvH4_6g10650 Fragaria vesca HOM05D006207 ORTHO05D007868 1.1e-61 241.1 306 46.1
FAN14G5611 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.1e-61 241.1 306 46.1
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 5.5e-61 238.8 303 43.9
FAN09G2678 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.6e-60 237.3 301 46.2
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 1.6e-60 237.3 296 43.6
ATR0594G098 Amborella trichopoda HOM05D006207 ORTHO05D007868 3.6e-60 236.1 298 46.0
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 4.6e-60 235.7 299 45.2
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 1.4e-59 234.2 309 44.7
HPP92_019707 Vanilla planifolia HOM05D006207 ORTHO05D007868 1.4e-59 234.2 308 46.8
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 2.3e-59 233.4 302 43.4
Ah.12g059050 Amaranthus hybridus HOM05D006207 ORTHO05D007868 1.5e-58 230.7 304 44.4
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 5.7e-58 228.8 295 45.4
TPR.G5270 Trifolium pratense HOM05D006207 ORTHO05D007868 9.7e-58 228.0 314 43.9
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 1.4e-53 214.2 307 42.0
Medtr4g014250 Medicago truncatula HOM05D006207 ORTHO05D007868 5.2e-51 205.7 298 42.3
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 2.8e-49 199.9 300 40.0
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 3.7e-49 199.5 185 56.2
SEGI_14997 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 4.8e-49 199.1 376 35.6
Pp3c3_16910 Physcomitrium patens HOM05D006207 ORTHO05D007868 4.1e-48 196.1 337 37.4
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 6.5e-46 188.7 227 45.8
Lj3P946T49 Lonicera japonica HOM05D006207 ORTHO05D007868 4.7e-44 182.6 180 52.8
AUR62030762 Chenopodium quinoa HOM05D006207 ORTHO05D007868 1.5e-42 177.6 297 39.1
Rhsim05G0225500 Rhododendron simsii HOM05D006207 ORTHO05D007868 1.6e-39 167.5 180 47.8
MD04G1166200 Malus domestica HOM05D006207 ORTHO05D007868 1.2e-34 151.4 215 44.2
Os07g0540200 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 1.3e-33 147.9 289 35.3
Zm00001eb163300 Zea mays HOM05D006207 ORTHO05D007868 1.3e-33 147.9 294 33.7
AagrBONN_evm.TU.Sc2ySwM_368.1939 Anthoceros agrestis HOM05D006207 ORTHO05D007868 1.1e-32 144.8 382 28.0
Duzib128G0456 Durio zibethinus HOM05D006207 ORTHO05D007868 1.6e-31 141.0 182 46.7
AUR62030533 Chenopodium quinoa HOM05D006207 ORTHO05D007868 4.9e-25 119.4 117 53.8
Os04g0479300 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 8.3e-25 118.6 289 32.9
Zm00001eb421620 Zea mays HOM05D006207 ORTHO05D007868 4.5e-23 112.8 287 31.4
CBR_g48858 Chara braunii HOM05D006207 ORTHO05D007868 1.9e-21 107.5 195 35.9
Mapoly0060s0108 Marchantia polymorpha HOM05D006207 ORTHO05D007868 6.4e-17 92.4 136 43.4
Ca_20352_v3 Cicer arietinum L. HOM05D006207 ORTHO05D007868 2.3e-14 84.0 69 62.3
SalBow6G1507 Salvia bowleyana HOM05D000800 ORTHO05D000658 1.8e-11 74.3 103 37.9
VMungo1215G0839 Vigna mungo HOM05D006207 ORTHO05D007868 2.0e-10 70.9 76 44.7
MD04G1166100 Malus domestica HOM05D006207 ORTHO05D007868 9.8e-10 68.6 53 64.2
Cc08_g04640 Coffea canephora HOM05D006207 ORTHO05D007868 9.2e-08 62.0 77 46.8
SEGI_11687 Sequoiadendron giganteum HOM05D003404 ORTHO05D000003 1.3e-06 58.2 86 39.5
SEGI_10643 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 3.0e-06 57.0 83 37.3
SalBow8G1578 Salvia bowleyana HOM05D006207 ORTHO05D007868 3.9e-06 56.6 59 50.8
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 8.6e-06 55.5 60 50.0


User provided reference genes

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