Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 9.3e-184 646.7 328 100.0
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.6e-149 532.3 328 79.9
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 4.8e-148 528.1 326 79.8
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 4.7e-143 511.5 326 76.1
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 4.0e-142 508.4 324 76.2
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 2.6e-141 505.8 323 75.5
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.6e-141 505.8 328 76.8
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 5.7e-141 504.6 324 76.2
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 2.2e-140 502.7 327 74.9
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 5.4e-139 498.0 326 75.5
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 2.7e-138 495.7 321 75.1
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 8.6e-137 490.7 326 73.9
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 8.6e-137 490.7 321 73.8
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.5e-136 489.2 322 73.6
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 2.1e-135 486.1 324 73.5
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 2.1e-135 486.1 325 72.9
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 4.7e-135 485.0 324 74.4
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 8.0e-135 484.2 326 74.2
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 1.4e-134 483.4 332 72.9
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 4.0e-134 481.9 321 72.9
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 4.0e-134 481.9 326 72.4
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.4e-133 478.4 322 73.3
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 9.8e-133 477.2 327 72.2
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 9.8e-133 477.2 327 72.2
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 1.3e-132 476.9 326 72.1
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 2.2e-132 476.1 326 71.2
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 3.7e-132 475.3 325 70.5
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.7e-132 475.3 321 70.4
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 6.4e-132 474.6 324 71.3
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 8.3e-132 474.2 319 73.4
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.1e-131 473.8 327 71.9
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 1.1e-131 473.8 326 72.7
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.4e-131 473.4 328 70.1
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 5.4e-131 471.5 322 72.7
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 7.0e-131 471.1 326 71.2
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.2e-131 470.7 321 69.8
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 9.2e-131 470.7 321 69.5
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 1.2e-130 470.3 325 70.2
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.2e-130 470.3 328 70.1
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.6e-130 469.9 324 71.0
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 2.7e-130 469.2 322 72.7
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 2.7e-130 469.2 322 71.7
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 3.5e-130 468.8 322 71.7
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 4.6e-130 468.4 318 72.0
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 5.9e-130 468.0 329 69.6
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 1.0e-129 467.2 324 71.0
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.0e-129 467.2 322 71.1
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.0e-129 467.2 328 68.3
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 1.7e-129 466.5 326 69.6
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 2.3e-129 466.1 324 70.7
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 2.3e-129 466.1 328 68.3
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 5.0e-129 464.9 318 71.1
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 5.0e-129 464.9 322 71.7
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 8.6e-129 464.2 277 82.3
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.9e-128 463.0 324 70.4
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 4.3e-128 461.8 322 70.8
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 1.2e-127 460.3 318 70.4
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 4.7e-127 458.4 326 69.6
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 8.0e-127 457.6 321 69.8
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.8e-126 456.4 321 69.2
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 5.2e-126 454.9 320 70.3
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 6.8e-126 454.5 322 68.9
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 8.9e-126 454.1 327 69.4
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 1.2e-125 453.8 324 68.2
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.0e-125 453.0 326 69.0
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.0e-125 453.0 326 68.4
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 4.4e-125 451.8 325 70.5
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 7.5e-125 451.1 322 68.3
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 2.9e-124 449.1 319 68.7
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.4e-124 448.0 322 68.9
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 1.1e-123 447.2 305 71.8
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.4e-123 446.8 321 67.3
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.4e-123 446.0 321 69.2
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 3.2e-123 445.7 369 64.0
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.2e-122 443.7 325 69.5
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.7e-122 442.6 326 68.7
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.3e-121 440.3 323 67.8
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 5.0e-121 438.3 325 67.4
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 6.6e-121 438.0 326 67.8
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 8.6e-121 437.6 322 67.4
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 1.5e-120 436.8 331 66.8
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 7.3e-120 434.5 325 66.5
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 7.3e-120 434.5 325 65.2
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 9.5e-120 434.1 321 67.6
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 3.6e-119 432.2 325 65.2
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 3.6e-119 432.2 325 66.8
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 4.7e-119 431.8 325 65.8
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.8e-118 429.9 325 64.9
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 5.2e-118 428.3 322 65.5
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 6.8e-118 427.9 307 67.4
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 6.8e-118 427.9 325 64.3
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 1.7e-116 423.3 323 65.0
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 3.7e-116 422.2 323 63.8
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 8.3e-116 421.0 325 64.6
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 1.1e-115 420.6 323 63.2
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.1e-115 420.6 324 64.5
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 1.1e-115 420.6 416 56.7
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 2.4e-115 419.5 323 64.1
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 4.1e-115 418.7 324 63.6
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.7e-114 416.0 303 65.7
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 3.5e-114 415.6 320 65.6
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 4.6e-114 415.2 325 64.0
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 7.8e-114 414.5 324 63.3
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.0e-113 414.1 377 57.8
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 6.6e-113 411.4 264 77.3
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 1.5e-112 410.2 318 64.5
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 9.5e-112 407.5 329 61.4
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 2.0e-109 399.8 254 77.6
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.9e-108 396.0 289 66.8
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 6.0e-106 388.3 323 60.4
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 4.3e-104 382.1 294 65.0
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.6e-104 381.7 322 62.4
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 6.2e-103 378.3 324 59.3
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.1e-102 375.9 321 59.5
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.7e-100 370.2 322 59.9
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 1.4e-99 367.1 544 41.2
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 2.3e-97 359.8 683 36.3
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.4e-94 350.5 325 57.2
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 9.0e-94 347.8 287 61.3
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 1.4e-91 340.5 308 54.9
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 4.6e-90 335.5 275 62.9
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 4.3e-88 328.9 235 69.4
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 1.1e-86 324.3 280 57.9
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 3.1e-86 322.8 256 64.1
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 4.0e-86 322.4 312 51.0
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 2.2e-84 316.6 312 49.7
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 2.4e-83 313.2 220 69.5
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 9.3e-83 311.2 202 76.2
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 5.3e-78 295.4 306 50.0
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 6.9e-70 268.5 176 74.4
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.3e-65 254.2 221 58.4
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 3.3e-56 223.0 303 38.9
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 3.3e-48 196.4 196 48.5
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 2.0e-40 170.6 96 83.3
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 3.0e-33 146.7 99 69.7
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 7.0e-30 135.6 99 66.7
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.5e-27 127.9 75 74.7
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.9e-27 127.5 93 62.4
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.9e-27 127.5 86 73.3
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 4.2e-27 126.3 93 62.4
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 1.2e-26 124.8 329 28.3
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 1.4e-25 121.3 119 56.3
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 6.6e-20 102.4 88 58.0
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.9e-19 100.9 81 59.3
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 2.9e-15 87.0 63 65.1
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.6e-10 70.1 56 57.1
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 8.0e-10 68.9 72 52.8
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 4.0e-09 66.6 54 59.3
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 4.0e-09 66.6 54 59.3
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 5.2e-09 66.2 54 59.3
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.7e-07 60.1 43 65.1


User provided reference genes

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