Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 0.0e+00 1281.9 616 100.0
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 3.0e-260 901.7 684 65.4
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 6.3e-258 894.0 679 64.9
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.0e-244 850.1 615 65.5
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 7.7e-240 833.9 683 61.3
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.3e-239 833.2 679 60.1
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.1e-237 825.9 680 59.3
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.3e-236 822.4 687 60.0
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 5.7e-235 817.8 707 59.1
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.2e-234 815.8 680 58.8
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 3.7e-234 815.1 681 59.3
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 6.4e-234 814.3 721 56.4
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.1e-233 813.5 712 57.0
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 1.1e-233 813.5 681 59.0
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.0e-231 807.0 682 58.7
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 9.5e-230 800.4 681 58.4
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 4.7e-229 798.1 677 58.1
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.0e-228 797.0 683 57.8
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.0e-228 797.0 719 57.3
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.4e-228 796.6 680 58.4
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 2.3e-228 795.8 684 57.6
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 3.1e-228 795.4 679 58.3
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 4.0e-228 795.0 679 58.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 2.6e-227 792.3 680 57.2
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 4.4e-227 791.6 680 57.2
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 5.8e-227 791.2 681 57.6
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 7.5e-227 790.8 701 55.9
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.4e-225 786.6 698 57.3
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.9e-225 786.2 680 57.4
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 1.9e-225 786.2 679 57.7
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 4.1e-225 785.0 680 57.2
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 7.0e-225 784.3 681 57.6
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.6e-224 783.1 681 57.6
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 3.5e-224 781.9 685 55.6
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 1.1e-222 776.9 659 58.4
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.5e-222 776.5 685 55.2
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 2.5e-222 775.8 685 57.1
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 3.3e-222 775.4 655 60.3
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 3.3e-222 775.4 687 57.1
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 4.3e-222 775.0 682 57.0
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.3e-222 775.0 680 56.6
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 2.8e-221 772.3 679 56.3
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.8e-221 772.3 680 56.5
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 3.1e-220 768.8 695 55.4
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 5.2e-220 768.1 686 56.6
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.5e-219 766.5 677 56.9
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.0e-219 766.1 679 57.0
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.4e-219 765.4 688 56.2
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 9.8e-219 763.8 679 56.7
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 2.2e-218 762.7 682 55.6
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 2.9e-218 762.3 672 56.7
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 4.9e-218 761.5 645 59.7
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.1e-217 760.4 673 56.9
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.4e-217 759.2 679 56.1
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 2.4e-217 759.2 613 61.0
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 2.4e-217 759.2 679 57.1
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.6e-216 756.5 665 57.1
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 6.0e-216 754.6 679 56.4
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 7.8e-216 754.2 676 54.9
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.7e-215 753.1 681 56.7
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.7e-215 753.1 676 56.1
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.6e-215 751.1 700 54.4
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 8.6e-215 750.7 680 55.3
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 8.6e-215 750.7 683 56.5
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 8.6e-215 750.7 683 56.1
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.1e-214 750.4 678 55.8
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.9e-214 749.6 688 55.5
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.8e-213 745.7 682 55.1
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 2.8e-213 745.7 680 55.6
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 4.7e-213 745.0 682 54.4
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.3e-212 742.7 717 53.7
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 3.1e-212 742.3 677 55.4
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.2e-211 740.3 686 52.8
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 4.4e-211 738.4 681 54.8
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.2e-210 736.1 643 57.9
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 2.4e-209 732.6 677 54.1
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 5.4e-209 731.5 679 54.2
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.8e-205 719.2 683 52.9
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 6.2e-205 718.0 683 53.0
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 2.0e-203 713.0 593 61.4
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.8e-202 708.8 629 55.2
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 6.4e-202 708.0 684 52.6
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 4.6e-200 701.8 845 45.8
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.3e-199 700.3 621 56.8
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.8e-197 691.8 628 56.1
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 4.0e-196 688.7 683 51.5
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 7.6e-195 684.5 679 50.2
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 9.9e-195 684.1 592 58.1
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 9.9e-195 684.1 681 50.4
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.3e-194 683.7 661 53.7
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 2.2e-194 682.9 677 49.8
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 3.2e-193 679.1 686 49.7
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 7.9e-192 674.5 681 48.9
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.7e-191 673.3 687 49.5
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 3.0e-191 672.5 686 49.9
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.9e-191 672.2 689 49.5
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 6.6e-191 671.4 686 49.4
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 6.6e-191 671.4 686 49.4
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.1e-190 670.6 687 48.8
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.5e-190 670.2 683 48.9
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.9e-190 669.8 686 49.4
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.3e-189 667.2 656 52.3
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.4e-188 663.7 683 48.9
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 6.9e-188 661.4 723 49.1
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.5e-187 660.2 684 49.3
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.5e-187 660.2 685 48.5
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 8.4e-186 654.4 730 46.7
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 3.5e-184 649.0 687 48.8
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.0e-183 647.5 685 47.9
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.9e-183 645.6 722 47.9
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 5.1e-183 645.2 683 48.2
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 8.7e-183 644.4 686 47.4
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 8.7e-183 644.4 669 51.4
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.1e-182 644.0 686 47.5
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.6e-181 640.2 689 48.3
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 9.0e-180 634.4 616 53.1
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.8e-178 629.0 687 46.3
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 3.8e-178 629.0 649 51.3
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.1e-177 627.5 686 46.6
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.1e-177 627.5 640 51.2
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 4.6e-176 622.1 679 49.2
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 6.0e-176 621.7 692 45.7
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.0e-175 620.9 684 48.0
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 5.1e-175 618.6 537 59.6
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 8.7e-175 617.8 686 48.8
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 4.5e-171 605.5 615 51.4
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 2.9e-170 602.8 679 47.6
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-164 583.6 670 45.2
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.6e-152 542.7 687 42.1
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 3.6e-152 542.7 563 52.0
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 4.2e-145 519.2 536 50.6
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 6.1e-136 488.8 545 46.8
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 9.8e-134 481.5 328 66.5
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 2.4e-124 450.3 361 55.7
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 3.2e-116 423.3 364 55.2
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 5.0e-106 389.4 291 61.9
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 7.1e-100 369.0 219 76.7
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 9.5e-97 358.6 322 51.6
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 9.6e-89 332.0 407 45.9
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.9e-84 317.8 318 47.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.1e-81 308.5 405 43.2
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 6.4e-77 292.7 562 33.1
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.9e-73 281.2 573 33.3
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 2.8e-72 277.3 473 35.7
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 8.1e-72 275.8 546 33.0
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 2.4e-63 247.7 255 51.0
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.2e-59 235.3 150 69.3
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 6.0e-59 233.0 153 68.6
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 1.3e-53 215.3 255 48.6
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 5.5e-52 209.9 139 69.8
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.2e-52 209.5 212 50.0
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 1.4e-47 195.3 216 48.1
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.5e-46 190.3 129 66.7
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 4.7e-43 180.3 229 42.4
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 3.9e-42 177.2 120 61.7
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 7.2e-36 156.4 178 46.6
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 8.8e-34 149.4 99 67.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 8.8e-34 149.4 99 67.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 8.8e-34 149.4 99 67.7
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.2e-22 112.5 263 29.7
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 6.5e-21 106.7 262 29.4
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.9e-20 105.1 97 56.7
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 3.2e-20 104.4 146 38.4
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.0e-18 99.4 208 31.7
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 4.0e-18 97.4 244 31.1
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.4e-17 94.4 385 25.5
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 4.4e-17 94.0 59 69.5
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 5.7e-17 93.6 72 58.3
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-15 89.4 80 55.0
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.4e-15 88.2 135 41.5
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.8e-13 80.9 48 70.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.8e-13 80.9 48 70.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 4.9e-08 63.9 46 58.7


User provided reference genes

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