Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10947 Nelumbo nucifera HOM05D006841 ORTHO05D008607 2.7e-149 531.9 264 100.0
TAR369G0096 Trochodendron aralioides HOM05D006841 ORTHO05D008607 3.1e-105 385.6 257 76.3
Nn2g13216 Nelumbo nucifera HOM05D006841 ORTHO05D008607 1.6e-104 383.3 262 75.2
TAR636G1839 Trochodendron aralioides HOM05D006841 ORTHO05D008607 3.8e-103 378.6 261 74.3
Dinv28672 Davidia involucrata HOM05D006841 ORTHO05D008607 6.1e-101 371.3 256 73.8
CSS0042618 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 6.5e-95 351.3 256 68.4
Atru.chr3.4145 Acer truncatum HOM05D006841 ORTHO05D008607 8.5e-95 350.9 252 70.2
Thecc.09G353800 Theobroma cacao HOM05D006841 ORTHO05D008607 4.2e-94 348.6 256 68.8
Potri.009G075200 Populus trichocarpa HOM05D006841 ORTHO05D008607 5.5e-94 348.2 245 71.0
Duzib170G1072 Durio zibethinus HOM05D006841 ORTHO05D008607 7.2e-94 347.8 240 72.5
PGR102G0989 Punica granatum HOM05D006841 ORTHO05D008607 2.1e-93 346.3 261 67.0
Manes.02G217600 Manihot esculenta HOM05D006841 ORTHO05D008607 2.7e-93 345.9 261 67.0
TWI79G1747 Tripterygium wilfordii HOM05D006841 ORTHO05D008607 4.0e-92 342.0 260 68.1
Gorai.009G112400 Gossypium raimondii HOM05D006841 ORTHO05D008607 2.6e-91 339.3 256 67.6
COL.COLO4_11072 Corchorus olitorius HOM05D006841 ORTHO05D008607 4.4e-91 338.6 259 67.6
ClCG02G019390 Citrullus lanatus HOM05D006841 ORTHO05D008607 5.7e-91 338.2 262 65.6
Gohir.D05G108200 Gossypium hirsutum HOM05D006841 ORTHO05D008607 1.7e-90 336.7 256 66.8
Prupe.6G052600 Prunus persica HOM05D006841 ORTHO05D008607 8.3e-90 334.3 257 67.7
Sabra09G0057100 Salix brachista HOM05D006841 ORTHO05D008607 8.3e-90 334.3 259 67.2
Ciclev10028251m.g Citrus clementina HOM05D006841 ORTHO05D008607 1.1e-89 334.0 253 66.8
CsaV3_6G016010 Cucumis sativus L. HOM05D006841 ORTHO05D008607 1.1e-89 334.0 259 64.9
Gohir.A05G108000 Gossypium hirsutum HOM05D006841 ORTHO05D008607 1.1e-89 334.0 256 66.8
Sed0019546 Sechium edule HOM05D006841 ORTHO05D008607 1.8e-89 333.2 262 64.5
MELO3C026835.2 Cucumis melo HOM05D006841 ORTHO05D008607 7.0e-89 331.3 259 64.9
MD03G1062600 Malus domestica HOM05D006841 ORTHO05D008607 4.5e-88 328.6 208 76.0
RcHm_v2.0_Chr5g0070721 Rosa chinensis HOM05D006841 ORTHO05D008607 5.9e-88 328.2 228 70.6
MD11G1066200 Malus domestica HOM05D006841 ORTHO05D008607 7.7e-88 327.8 228 71.1
Duzib168G0722 Durio zibethinus HOM05D006841 ORTHO05D008607 1.3e-87 327.0 256 66.0
CiPaw.14G056400 Carya illinoinensis HOM05D006841 ORTHO05D008607 1.5e-86 323.6 220 73.6
Eucgr.B02230 Eucalyptus grandis HOM05D006841 ORTHO05D008607 2.5e-86 322.8 213 73.7
Lj2A1088G41 Lonicera japonica HOM05D006841 ORTHO05D008607 2.5e-86 322.8 239 68.2
CANSAT54G0320 Cannabis sativa HOM05D006841 ORTHO05D008607 4.2e-86 322.0 258 64.3
Rhsim01G0239400 Rhododendron simsii HOM05D006841 ORTHO05D008607 5.5e-86 321.6 254 64.2
Glyma.18G059800 Glycine max HOM05D006841 ORTHO05D008607 7.2e-86 321.2 262 63.7
Actinidia34467 Actinidia chinensis HOM05D006841 ORTHO05D008607 1.6e-85 320.1 263 63.5
CSS0014141 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 4.7e-85 318.5 256 63.3
FvH4_3g39290 Fragaria vesca HOM05D006841 ORTHO05D008607 6.1e-85 318.2 230 68.7
FAN21G2904 Fragaria x ananassa HOM05D006841 ORTHO05D008607 6.1e-85 318.2 231 68.4
FAN11G0941 Fragaria x ananassa HOM05D006841 ORTHO05D008607 8.0e-85 317.8 230 68.7
Sc06g0008150 Simmondsia chinensis HOM05D006841 ORTHO05D008607 8.0e-85 317.8 234 67.5
vmacro14612 Vaccinium macrocarpon HOM05D006841 ORTHO05D008607 1.8e-84 316.6 215 71.2
FAN25G3694 Fragaria x ananassa HOM05D006841 ORTHO05D008607 4.0e-84 315.5 230 68.3
Actinidia23875 Actinidia chinensis HOM05D006841 ORTHO05D008607 8.8e-84 314.3 212 71.2
Glyma.11G167300 Glycine max HOM05D006841 ORTHO05D008607 1.5e-83 313.5 260 64.2
EL10Ac7g15887 Beta vulgaris HOM05D006841 ORTHO05D008607 2.0e-83 313.2 215 71.6
Ah.15g096690 Amaranthus hybridus HOM05D006841 ORTHO05D008607 5.7e-83 311.6 244 66.4
Phvul.006G071400 Phaseolus vulgaris HOM05D006841 ORTHO05D008607 7.5e-83 311.2 221 69.2
arahy.Tifrunner.gnm1.ann1.UR06JS Arachis hypogaea HOM05D006841 ORTHO05D008607 1.7e-82 310.1 233 68.7
arahy.Tifrunner.gnm1.ann1.1QT3IR Arachis hypogaea HOM05D006841 ORTHO05D008607 2.2e-82 309.7 233 69.1
AUR62009700 Chenopodium quinoa HOM05D006841 ORTHO05D008607 4.9e-82 308.5 215 69.8
Oeu018490.1 Olea europaea HOM05D006841 ORTHO05D008607 4.9e-82 308.5 217 71.0
Hund05042 Selenicereus undatus HOM05D006841 ORTHO05D008607 4.9e-82 308.5 213 71.8
Lj6g0024894 Lotus japonicus HOM05D006841 ORTHO05D008607 6.3e-82 308.1 260 61.2
CiPaw.13G073200 Carya illinoinensis HOM05D006841 ORTHO05D008607 1.4e-81 307.0 222 68.0
SalBow2G2391 Salvia bowleyana HOM05D006841 ORTHO05D008607 1.8e-81 306.6 213 71.8
VMungo0540G0160 Vigna mungo HOM05D006841 ORTHO05D008607 2.4e-81 306.2 205 72.2
Lsat_1_v5_gn_5_173260 Lactuca sativa HOM05D006841 ORTHO05D008607 9.2e-81 304.3 212 68.4
AUR62036246 Chenopodium quinoa HOM05D006841 ORTHO05D008607 1.2e-80 303.9 215 68.8
TPR.G32925 Trifolium pratense HOM05D006841 ORTHO05D008607 5.9e-80 301.6 260 61.5
Haze_24381 Corylus avellana HOM05D006841 ORTHO05D008607 1.3e-79 300.4 257 63.0
PSO017G2874 Papaver somniferum HOM05D006841 ORTHO05D008607 2.9e-79 299.3 272 59.9
Psat5g157440 Pisum sativum HOM05D006841 ORTHO05D008607 5.0e-79 298.5 189 76.7
Solyc05g012140.3 Solanum lycopersicum HOM05D006841 ORTHO05D008607 8.6e-79 297.7 209 70.3
PSO349G0316 Papaver somniferum HOM05D006841 ORTHO05D008607 1.1e-78 297.4 273 60.4
Lalb_Chr18g0051231 Lupinus albus HOM05D006841 ORTHO05D008607 1.9e-78 296.6 259 61.0
Medtr3g465390 Medicago truncatula HOM05D006841 ORTHO05D008607 1.9e-78 296.6 263 60.8
Sopen05g006930 Solanum pennellii HOM05D006841 ORTHO05D008607 1.9e-78 296.6 209 70.3
PGSC0003DMG401028313 Solanum tuberosum HOM05D006841 ORTHO05D008607 1.9e-78 296.6 209 70.3
MSTRG.12683 Avicennia marina HOM05D006841 ORTHO05D008607 3.3e-78 295.8 216 69.0
Migut.N00773 Erythranthe guttata HOM05D006841 ORTHO05D008607 7.3e-78 294.7 223 66.4
HanXRQChr01g0011601 Helianthus annuus HOM05D006841 ORTHO05D008607 6.1e-77 291.6 217 67.7
QL01p039597 Quercus lobata HOM05D006841 ORTHO05D008607 4.0e-76 288.9 273 59.0
SGA_v2.0_scaffold104G30129 Striga asiatica HOM05D006841 ORTHO05D008607 6.8e-76 288.1 201 68.7
Aqoxy1G01268 Aquilegia oxysepala HOM05D006841 ORTHO05D008607 2.0e-75 286.6 269 61.0
CDE06G2104 Ceratophyllum demersum HOM05D006841 ORTHO05D008607 2.0e-75 286.6 261 56.7
Ca_14982_v3 Cicer arietinum L. HOM05D006841 ORTHO05D008607 2.0e-75 286.6 193 74.1
unitig_94.g28363 Utricularia gibba HOM05D006841 ORTHO05D008607 1.1e-73 280.8 188 73.9
MBI15_g21765_MAGBIO Magnolia biondii HOM05D006841 ORTHO05D008607 1.4e-73 280.4 190 70.5
THA.LOC104800754 Tarenaya hassleriana HOM05D006841 ORTHO05D008607 1.4e-73 280.4 261 58.2
ECA248G2088 Erigeron canadensis HOM05D006841 ORTHO05D008607 1.8e-73 280.0 184 71.7
Peaxi162Scf01324g00238 Petunia axillaris HOM05D006841 ORTHO05D008607 4.1e-73 278.9 197 71.1
Ah.08g215320 Amaranthus hybridus HOM05D006841 ORTHO05D008607 1.6e-72 276.9 215 64.7
CAN.G707.10 Capsicum annuum HOM05D006841 ORTHO05D008607 1.6e-72 276.9 198 72.2
CARHR123400 Cardamine hirsuta HOM05D006841 ORTHO05D008607 5.6e-70 268.5 203 67.0
Aa31LG5G6580 Aethionema arabicum HOM05D006841 ORTHO05D008607 1.2e-69 267.3 201 66.2
AL4G24870 Arabidopsis lyrata HOM05D006841 ORTHO05D008607 2.8e-69 266.2 226 61.9
Thhalv10016546m.g Eutrema salsugineum HOM05D006841 ORTHO05D008607 2.8e-69 266.2 221 64.7
Carub.0004s1120 Capsella rubella HOM05D006841 ORTHO05D008607 6.2e-69 265.0 270 55.6
AL59U10050 Arabidopsis lyrata HOM05D006841 ORTHO05D008607 8.0e-69 264.6 226 61.9
AT2G30100 Arabidopsis thaliana HOM05D006841 ORTHO05D008607 8.0e-69 264.6 217 63.6
C04p58980 Brassica napus HOM05D006841 ORTHO05D008607 1.4e-68 263.8 194 67.0
BolC4t27410H Brassica oleracea HOM05D006841 ORTHO05D008607 3.1e-68 262.7 206 63.6
Sp4g12660 Schrenkiella parvula HOM05D006841 ORTHO05D008607 3.1e-68 262.7 197 68.0
A04p22780 Brassica napus HOM05D006841 ORTHO05D008607 1.2e-67 260.8 207 63.3
BraA04t17817Z Brassica rapa HOM05D006841 ORTHO05D008607 3.4e-67 259.2 209 62.2
HPP92_025104 Vanilla planifolia HOM05D006841 ORTHO05D008607 4.4e-67 258.8 189 64.0
Cpa.g.sc2.394 Carica papaya HOM05D006841 ORTHO05D008607 5.8e-67 258.5 150 80.7
BcaC02g08056 Brassica carinata HOM05D006841 ORTHO05D008607 3.9e-63 245.7 184 66.8
ATR0174G035 Amborella trichopoda HOM05D006841 ORTHO05D008607 6.6e-63 245.0 175 66.3
MD11G1194000 Malus domestica HOM05D006841 ORTHO05D008607 1.4e-60 237.3 134 85.8
GSVIVG01024686001 Vitis vinifera HOM05D006841 ORTHO05D008607 7.3e-46 188.3 146 65.8
Zm00001eb286480 Zea mays HOM05D006841 ORTHO05D008607 1.6e-45 187.2 171 55.0
SEGI_38470 Sequoiadendron giganteum HOM05D006841 ORTHO05D008607 3.6e-45 186.0 170 51.2
Os05g0353300 Oryza sativa ssp. japonica HOM05D006841 ORTHO05D008607 6.8e-44 181.8 207 48.3
Pp3c12_8330 Physcomitrium patens HOM05D006841 ORTHO05D008607 6.8e-44 181.8 170 52.4
Mapoly0068s0098 Marchantia polymorpha HOM05D006841 ORTHO05D008607 6.4e-42 175.3 208 45.2
Cc01_g14600 Coffea canephora HOM05D006841 ORTHO05D008607 1.2e-40 171.0 144 61.1
Oeu034514.1 Olea europaea HOM05D006841 ORTHO05D008607 1.1e-36 157.9 126 61.9
CSS0012316 Camellia sinensis var. sinensis HOM05D006841 ORTHO05D008607 1.8e-36 157.1 165 51.5
DCAR_007349 Daucus carota HOM05D006841 ORTHO05D008607 3.1e-36 156.4 100 72.0
Oeu034518.1 Olea europaea HOM05D006841 ORTHO05D008607 3.4e-35 152.9 125 61.6
SMO304G0125 Selaginella moellendorffii HOM05D006841 ORTHO05D008607 2.4e-33 146.7 142 47.9
AagrBONN_evm.TU.Sc2ySwM_117.787 Anthoceros agrestis HOM05D006841 ORTHO05D008607 2.1e-32 143.7 148 48.6
VMungo0331G0799 Vigna mungo HOM05D000172 ORTHO05D004529 2.2e-26 123.6 87 67.8


User provided reference genes

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