Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 8.3e-123 443.7 226 100.0
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.2e-94 350.1 228 78.5
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 3.0e-88 328.9 237 72.6
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 3.9e-88 328.6 229 71.2
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 5.1e-88 328.2 237 72.2
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 8.6e-88 327.4 230 73.0
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 8.6e-88 327.4 227 72.7
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 6.2e-86 321.2 229 70.7
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.4e-85 320.1 230 66.1
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 3.1e-85 318.9 235 69.8
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 5.2e-85 318.2 235 67.7
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 6.8e-85 317.8 232 68.1
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.0e-84 316.2 226 72.6
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 3.4e-84 315.5 228 69.3
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 9.9e-84 313.9 235 71.9
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 9.9e-84 313.9 230 70.4
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.3e-83 313.5 239 64.0
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.3e-83 313.5 232 65.1
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.4e-82 310.1 221 66.1
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.9e-82 309.7 228 68.9
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 2.4e-82 309.3 226 70.8
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.4e-82 309.3 231 70.1
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 4.2e-82 308.5 255 62.0
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 1.2e-81 307.0 231 67.5
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.6e-81 306.6 237 64.1
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 2.1e-81 306.2 219 67.1
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 2.1e-81 306.2 226 69.5
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.7e-81 305.8 230 67.8
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 2.7e-81 305.8 231 67.5
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 2.7e-81 305.8 238 63.9
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 3.5e-81 305.4 231 67.1
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 7.8e-81 304.3 228 68.4
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 1.0e-80 303.9 228 68.4
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.0e-80 303.9 233 69.1
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.7e-80 303.1 222 65.3
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 1.7e-80 303.1 234 65.0
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 2.3e-80 302.8 231 69.7
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.0e-80 302.4 221 66.5
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 3.0e-80 302.4 226 68.6
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 3.0e-80 302.4 229 69.0
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 3.9e-80 302.0 228 68.9
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.1e-79 300.4 232 70.3
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 1.9e-79 299.7 228 67.5
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 1.9e-79 299.7 225 65.3
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 2.5e-79 299.3 222 66.2
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 2.5e-79 299.3 231 67.5
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.3e-79 298.9 222 64.9
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 5.6e-79 298.1 223 65.5
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 5.6e-79 298.1 223 65.5
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 7.3e-79 297.7 223 63.2
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 9.6e-79 297.4 227 67.0
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 2.1e-78 296.2 233 63.1
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 3.6e-78 295.4 222 64.4
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 3.6e-78 295.4 223 64.1
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 3.6e-78 295.4 216 71.3
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 4.8e-78 295.0 222 66.7
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 4.8e-78 295.0 227 68.3
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 1.4e-77 293.5 232 66.4
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 2.4e-77 292.7 224 67.9
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 4.0e-77 292.0 226 63.7
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 4.0e-77 292.0 222 63.1
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 5.3e-77 291.6 223 66.4
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 9.0e-77 290.8 214 65.4
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 1.5e-76 290.0 218 64.2
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 1.5e-76 290.0 218 64.2
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 1.5e-76 290.0 235 65.5
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 1.5e-76 290.0 226 69.9
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 3.4e-76 288.9 228 62.7
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 3.4e-76 288.9 219 68.0
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 7.6e-76 287.7 218 65.6
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.7e-75 286.6 225 66.7
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 2.2e-75 286.2 222 67.1
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.2e-75 286.2 222 67.1
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 2.9e-75 285.8 227 63.4
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 3.8e-75 285.4 219 64.8
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 6.4e-75 284.6 223 61.9
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 6.4e-75 284.6 229 60.7
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 8.4e-75 284.3 221 65.2
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.4e-74 282.7 208 66.3
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.4e-74 282.7 228 64.9
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 7.1e-74 281.2 239 58.6
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 7.1e-74 281.2 228 64.5
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 9.3e-74 280.8 226 63.3
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.6e-73 280.0 231 61.5
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.7e-73 279.3 228 63.2
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.7e-73 279.3 227 64.3
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 2.7e-73 279.3 233 63.9
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 4.6e-73 278.5 228 61.0
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 6.0e-73 278.1 225 64.0
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.7e-72 276.6 231 64.9
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.3e-72 276.2 218 67.9
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 3.9e-72 275.4 230 63.0
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 5.1e-72 275.0 214 65.4
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 6.6e-72 274.6 225 63.6
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 8.7e-72 274.2 230 63.0
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 1.9e-71 273.1 225 62.2
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 4.3e-71 271.9 229 62.0
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 4.3e-71 271.9 253 58.5
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.3e-71 271.2 230 62.6
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 7.3e-71 271.2 230 62.6
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 9.6e-71 270.8 202 65.8
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 2.1e-70 269.6 174 70.7
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 2.8e-70 269.2 236 59.7
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 4.8e-70 268.5 248 58.9
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 6.2e-70 268.1 219 63.0
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 8.1e-70 267.7 239 60.7
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.4e-69 266.9 226 62.8
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 2.4e-69 266.2 245 58.4
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 5.3e-69 265.0 208 67.3
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 6.9e-69 264.6 234 59.0
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.0e-69 264.2 227 58.1
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 9.0e-69 264.2 220 59.1
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 1.2e-68 263.8 222 60.8
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 1.5e-68 263.5 227 58.1
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-68 263.5 227 58.1
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-68 263.5 227 58.1
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.5e-68 263.5 220 62.3
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 3.4e-68 262.3 271 55.4
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 9.9e-68 260.8 264 53.8
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 9.9e-68 260.8 223 61.0
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 1.3e-67 260.4 160 75.0
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 1.3e-67 260.4 253 54.2
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 6.4e-67 258.1 180 67.2
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.4e-66 256.1 227 56.8
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 5.5e-66 255.0 264 51.5
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 2.3e-64 249.6 221 61.1
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.1e-63 247.3 169 68.6
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.5e-63 246.9 226 55.8
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 4.8e-62 241.9 197 62.9
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 4.8e-62 241.9 269 49.1
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 2.4e-61 239.6 142 76.8
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 1.3e-59 233.8 143 79.7
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 2.9e-59 232.6 238 55.0
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 7.1e-58 228.0 185 62.7
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.6e-57 226.9 140 75.0
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.3e-56 223.8 240 55.0
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 8.7e-56 221.1 146 72.6
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-55 220.3 277 48.4
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 5.7e-55 218.4 147 71.4
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.6e-49 200.3 131 70.2
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 6.7e-48 194.9 130 73.1
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.5e-47 193.0 138 67.4
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 5.3e-45 185.3 138 62.3
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 5.3e-45 185.3 149 57.7
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 2.9e-43 179.5 127 66.1
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 1.1e-42 177.6 122 68.0
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-36 157.1 227 42.7
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 4.5e-36 155.6 98 74.5
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.2e-33 147.5 99 70.7
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 5.7e-31 138.7 146 54.1
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.3e-27 127.5 114 57.0
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 2.2e-27 126.7 97 68.0
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.3e-24 116.7 177 36.7
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 7.5e-23 111.7 222 32.0
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 4.5e-20 102.4 99 63.6
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 5.5e-18 95.5 123 39.0
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 2.1e-17 93.6 73 56.2
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.8e-16 90.5 102 44.1
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 4.8e-14 82.4 94 52.1
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 4.8e-14 82.4 92 57.6
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 6.3e-14 82.0 143 37.1
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 6.3e-14 82.0 144 30.6
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 8.3e-14 81.6 119 35.3
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 1.1e-13 81.3 88 53.4
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 2.4e-13 80.1 83 57.8
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 6.1e-09 65.5 73 43.8
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 2.6e-07 60.1 56 46.4


User provided reference genes

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