Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 1.6e-264 915.6 494 100.0
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.6e-187 659.8 501 68.9
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 1.0e-181 640.6 501 65.9
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 9.4e-180 634.0 498 68.5
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 3.8e-173 612.1 514 63.4
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 2.6e-169 599.4 502 62.2
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 5.7e-169 598.2 501 62.9
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 7.5e-169 597.8 493 64.1
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 6.3e-168 594.7 479 64.7
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 2.7e-166 589.3 443 66.1
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 2.7e-166 589.3 488 63.5
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 1.3e-165 587.0 485 63.5
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.9e-165 585.9 505 62.0
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 3.8e-165 585.5 505 62.0
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 5.0e-165 585.1 497 62.2
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 1.1e-164 583.9 457 63.9
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.1e-164 583.9 505 61.8
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 2.5e-164 582.8 441 66.7
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.8e-163 579.3 504 61.5
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 3.6e-163 578.9 502 60.8
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 4.7e-163 578.6 494 61.9
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 1.0e-162 577.4 502 61.2
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.8e-162 576.6 494 61.9
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 1.5e-161 573.5 502 60.6
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 2.6e-161 572.8 492 61.6
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 2.6e-161 572.8 485 60.6
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 9.8e-161 570.9 486 61.3
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 9.8e-161 570.9 499 61.1
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.3e-160 570.5 495 60.0
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 6.4e-160 568.2 496 59.7
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 3.2e-159 565.8 501 60.5
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 2.0e-158 563.1 496 58.5
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 2.0e-158 563.1 502 60.4
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 4.6e-158 562.0 493 60.9
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 6.0e-158 561.6 497 59.6
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 2.3e-157 559.7 493 58.8
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 3.0e-157 559.3 486 61.5
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 3.3e-156 555.8 449 63.9
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 5.6e-156 555.1 489 59.5
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 1.6e-155 553.5 491 58.9
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 2.1e-155 553.1 475 61.3
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 2.8e-155 552.7 484 60.1
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 6.2e-155 551.6 436 62.4
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 8.0e-155 551.2 591 51.9
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.8e-154 550.1 491 58.0
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 1.8e-154 550.1 497 58.4
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 3.1e-154 549.3 498 58.4
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 5.2e-154 548.5 497 58.4
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 6.8e-154 548.1 494 58.1
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 8.9e-154 547.7 491 58.2
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 2.6e-153 546.2 491 57.8
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 7.5e-153 544.7 504 58.3
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 7.5e-153 544.7 482 59.3
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 2.2e-152 543.1 493 58.6
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 4.1e-151 538.9 497 57.1
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 5.4e-151 538.5 443 62.3
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 2.0e-150 536.6 497 55.5
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 3.5e-150 535.8 501 59.3
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 7.8e-150 534.6 452 61.9
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.0e-149 534.3 507 57.0
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 1.0e-149 534.3 467 59.7
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 5.0e-149 531.9 443 61.6
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 3.3e-148 529.3 488 56.8
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 3.3e-148 529.3 454 61.0
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 7.3e-148 528.1 496 58.1
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 9.5e-148 527.7 447 61.5
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 3.6e-147 525.8 447 60.9
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 1.8e-146 523.5 495 56.2
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.5e-145 520.4 490 56.3
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 4.4e-145 518.8 470 57.4
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 5.8e-145 518.5 469 57.1
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.2e-144 516.5 484 56.6
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 6.4e-144 515.0 487 56.9
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 1.3e-141 507.3 426 60.3
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 2.3e-141 506.5 492 55.5
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 3.0e-141 506.1 496 56.7
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 3.9e-141 505.8 441 58.7
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 8.6e-141 504.6 430 61.2
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 1.5e-140 503.8 490 56.3
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 1.9e-140 503.4 510 55.7
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 5.6e-140 501.9 444 57.9
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 7.3e-140 501.5 502 53.8
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 7.3e-140 501.5 502 53.8
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 7.3e-140 501.5 499 55.3
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.2e-139 500.7 481 54.7
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 1.6e-139 500.4 446 57.6
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 6.2e-139 498.4 425 61.9
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 6.8e-138 495.0 489 53.2
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 1.2e-137 494.2 495 53.5
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.5e-137 493.8 489 53.2
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 4.4e-137 492.3 493 53.3
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 9.9e-137 491.1 453 57.4
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 1.3e-136 490.7 453 57.0
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 1.7e-136 490.3 436 58.7
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 2.2e-136 490.0 498 53.2
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 2.9e-136 489.6 504 52.4
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 6.4e-136 488.4 499 53.9
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 6.4e-136 488.4 488 55.1
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 6.4e-136 488.4 501 55.3
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 2.4e-135 486.5 512 51.8
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 8.7e-133 478.0 499 53.9
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 1.1e-132 477.6 501 54.9
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 1.5e-132 477.2 498 54.2
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 4.3e-132 475.7 501 54.9
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 9.6e-132 474.6 396 63.1
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.6e-131 473.8 441 58.3
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 4.7e-131 472.2 490 53.3
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 4.0e-130 469.2 498 53.8
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 9.0e-130 468.0 513 49.9
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 1.1e-127 461.1 503 48.9
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 3.2e-127 459.5 494 53.8
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 1.0e-125 454.5 463 53.3
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.3e-123 447.6 413 59.6
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 2.4e-119 433.3 489 52.8
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 5.4e-119 432.2 317 65.0
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 1.5e-116 424.1 403 57.1
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 1.1e-111 407.9 427 54.6
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 1.4e-106 391.0 386 56.7
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 6.5e-104 382.1 482 46.7
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 1.1e-103 381.3 442 48.9
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.9e-103 380.6 427 49.4
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 1.3e-101 374.4 457 45.5
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 1.4e-98 364.4 312 59.6
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 1.4e-98 364.4 333 56.8
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 2.3e-93 347.1 508 40.0
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 3.9e-93 346.3 312 57.1
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 2.8e-91 340.1 398 50.8
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 2.4e-90 337.0 416 44.7
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 9.7e-84 315.1 200 73.5
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 2.6e-76 290.4 235 59.6
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 9.1e-74 282.0 314 46.5
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 1.3e-72 278.1 296 49.0
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 3.8e-72 276.6 311 52.4
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 1.2e-68 265.0 191 67.0
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 3.7e-67 260.0 489 34.4
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 1.7e-64 251.1 232 62.5
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 2.2e-51 207.6 196 56.1
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 2.1e-46 191.0 132 67.4
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 4.3e-39 166.8 311 32.2
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 1.2e-38 165.2 282 34.4
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 4.4e-36 156.8 140 58.6
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 2.1e-30 137.9 198 41.4
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 4.9e-27 126.7 78 70.5
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 4.6e-25 120.2 84 66.7
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 1.5e-23 115.2 80 65.0
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 5.2e-21 106.7 130 52.3
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 3.2e-18 97.4 89 58.4
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 7.1e-18 96.3 132 45.5
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 1.3e-16 92.0 64 68.8
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 6.6e-16 89.7 64 67.2
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 2.6e-12 77.8 57 66.7
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 3.5e-09 67.4 46 63.0
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 7.8e-09 66.2 181 27.6
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 1.5e-07 62.0 88 44.3
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 6.2e-06 56.6 102 36.3


User provided reference genes

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