Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 1.6e-171 605.9 295 100.0
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 9.2e-114 414.1 237 84.4
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 2.8e-110 402.5 225 84.4
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 8.0e-110 401.0 225 84.0
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 1.4e-109 400.2 224 83.9
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 5.2e-109 398.3 240 80.8
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 1.2e-108 397.1 226 81.9
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 2.0e-108 396.4 236 80.9
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 3.4e-108 395.6 225 81.8
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 7.5e-108 394.4 227 83.3
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 4.9e-107 391.7 237 79.3
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 7.0e-106 387.9 226 81.0
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 1.2e-105 387.1 236 78.4
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 2.0e-105 386.3 231 79.7
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 1.0e-104 384.0 236 77.5
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 1.0e-104 384.0 239 77.0
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 1.3e-104 383.6 224 80.8
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 1.3e-104 383.6 224 79.5
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 1.3e-104 383.6 224 80.8
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 2.3e-104 382.9 224 79.5
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 3.0e-104 382.5 231 80.1
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 3.0e-104 382.5 226 78.3
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 1.5e-103 380.2 222 79.7
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 1.5e-103 380.2 233 77.7
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 1.5e-103 380.2 224 79.5
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 1.9e-103 379.8 238 77.3
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 2.5e-103 379.4 224 80.8
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 4.3e-103 378.6 227 78.9
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 9.5e-103 377.5 224 79.5
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 9.5e-103 377.5 229 77.3
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 1.2e-102 377.1 226 78.8
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 1.2e-102 377.1 227 78.4
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 2.1e-102 376.3 222 78.4
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 2.1e-102 376.3 224 77.2
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 3.6e-102 375.6 227 79.7
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 6.2e-102 374.8 223 78.9
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 1.1e-101 374.0 228 78.9
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 1.4e-101 373.6 222 77.9
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 2.3e-101 372.9 222 77.0
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 4.0e-101 372.1 224 76.8
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 5.2e-101 371.7 223 80.3
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 5.2e-101 371.7 220 79.5
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 8.9e-101 370.9 226 77.9
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 2.6e-100 369.4 242 72.7
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 4.4e-100 368.6 224 75.4
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 4.4e-100 368.6 226 75.7
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 9.8e-100 367.5 220 78.6
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.3e-99 367.1 223 80.3
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 2.9e-99 365.9 223 77.1
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 4.9e-99 365.2 222 75.7
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 8.3e-99 364.4 222 77.5
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 1.1e-98 364.0 222 77.0
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 1.9e-98 363.2 227 75.8
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 2.4e-98 362.8 222 76.6
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 2.4e-98 362.8 222 76.1
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 3.2e-98 362.5 222 76.1
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 4.1e-98 362.1 222 77.0
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 5.4e-98 361.7 222 76.1
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 7.0e-98 361.3 222 75.7
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 1.2e-97 360.5 225 75.6
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 1.2e-97 360.5 222 76.1
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.6e-97 360.1 224 76.3
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 3.5e-97 359.0 222 75.2
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 3.5e-97 359.0 222 75.7
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 4.6e-97 358.6 228 73.2
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 6.0e-97 358.2 222 76.1
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 6.0e-97 358.2 224 75.9
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 6.0e-97 358.2 222 75.7
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 6.0e-97 358.2 222 75.7
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 7.8e-97 357.8 223 74.9
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 7.8e-97 357.8 222 74.8
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 1.7e-96 356.7 222 75.2
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 1.7e-96 356.7 251 69.7
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 2.3e-96 356.3 227 74.9
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 2.3e-96 356.3 225 73.3
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 3.0e-96 355.9 227 75.3
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 5.1e-96 355.1 241 72.2
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 5.1e-96 355.1 222 74.3
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 1.5e-95 353.6 235 71.1
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 3.3e-95 352.4 225 73.3
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 3.3e-95 352.4 222 73.4
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 7.3e-95 351.3 222 74.3
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 2.1e-94 349.7 235 70.6
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 2.1e-94 349.7 235 70.6
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 1.1e-93 347.4 225 72.4
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 5.2e-93 345.1 227 74.0
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 7.5e-92 341.3 223 71.7
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 7.5e-92 341.3 224 73.7
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 9.2e-90 334.3 220 70.9
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 6.0e-89 331.6 226 69.9
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 6.0e-89 331.6 223 73.5
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 1.3e-88 330.5 220 70.0
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 2.3e-88 329.7 227 69.6
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 3.0e-88 329.3 246 65.4
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 1.5e-87 327.0 232 69.0
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 1.5e-87 327.0 227 69.6
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 3.3e-87 325.9 224 69.2
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 3.6e-86 322.4 209 73.2
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 4.4e-84 315.5 207 73.4
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 2.7e-81 306.2 222 62.6
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 6.0e-81 305.1 223 67.3
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 3.9e-80 302.4 236 64.0
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 3.3e-79 299.3 248 61.7
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 3.3e-79 299.3 236 64.0
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 5.6e-79 298.5 175 81.1
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 3.1e-77 292.7 166 81.9
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 3.1e-77 292.7 217 65.0
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 5.8e-76 288.5 251 57.4
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 3.8e-75 285.8 227 62.1
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 1.4e-74 283.9 227 61.7
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 5.4e-74 282.0 172 80.2
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 2.3e-72 276.6 177 77.4
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 3.0e-72 276.2 221 62.4
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 8.7e-72 274.6 222 60.4
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 1.1e-71 274.2 167 80.2
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 1.9e-66 256.9 167 72.5
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 2.7e-65 253.1 167 72.5
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 3.4e-60 236.1 152 73.7
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 6.2e-54 215.3 132 75.8
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 5.8e-52 208.8 136 69.1
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 5.5e-50 202.2 132 73.5
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 1.0e-48 198.0 220 47.3
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 9.0e-45 184.9 154 67.5
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 2.6e-44 183.3 133 66.2
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 5.0e-43 179.1 138 59.4
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 5.0e-43 179.1 133 61.7
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 7.2e-42 175.3 212 47.2
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 2.7e-41 173.3 169 56.2
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 2.8e-38 163.3 138 60.9
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 3.3e-31 139.8 90 73.3
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 1.3e-27 127.9 138 51.4
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 1.8e-24 117.5 90 64.4
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-22 111.3 127 48.0
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 3.8e-19 99.8 62 75.8
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 4.1e-13 79.7 119 37.0
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 3.8e-11 73.2 77 51.9
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 9.4e-10 68.6 41 65.9
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 3.0e-08 63.5 87 35.6
Actinidia37356 Actinidia chinensis HOM05D002510 ORTHO05D006928 3.4e-07 60.1 48 64.6
Cre06.g269100 Chlamydomonas reinhardtii HOM05D006270 ORTHO05D007755 8.3e-06 55.5 69 42.0


User provided reference genes

Program Settings