Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 2.1e-71 272.3 145 100.0
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 5.3e-30 134.8 152 56.6
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.9e-27 126.3 141 52.5
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.2e-26 123.6 142 49.3
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 4.6e-26 121.7 146 53.4
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 1.0e-25 120.6 126 55.6
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 3.0e-25 119.0 137 48.9
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 3.9e-25 118.6 136 50.0
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 6.7e-25 117.9 144 48.6
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 8.7e-25 117.5 136 49.3
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.9e-24 116.3 145 46.9
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.9e-24 116.3 138 49.3
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 3.3e-24 115.5 144 50.0
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 3.3e-24 115.5 137 48.2
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 7.4e-24 114.4 143 49.7
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 7.4e-24 114.4 137 46.7
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 9.6e-24 114.0 142 47.9
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 1.3e-23 113.6 137 46.7
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 1.6e-23 113.2 142 52.1
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.6e-23 113.2 139 50.4
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 2.1e-23 112.8 144 49.3
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 2.1e-23 112.8 137 46.0
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.1e-23 112.8 137 46.0
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.7e-23 112.1 137 46.0
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.2e-23 111.3 144 45.8
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 8.2e-23 110.9 149 47.0
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.1e-22 110.5 137 46.0
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.1e-22 110.5 147 46.3
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.4e-22 110.2 132 49.2
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.1e-22 109.0 144 45.1
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 4.0e-22 108.6 130 48.5
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 4.0e-22 108.6 145 49.0
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 5.3e-22 108.2 149 47.0
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 5.3e-22 108.2 133 48.9
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.9e-22 107.8 144 45.1
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 6.9e-22 107.8 149 46.3
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 9.0e-22 107.5 142 47.9
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 2.6e-21 105.9 130 47.7
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 3.4e-21 105.5 141 48.2
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 5.8e-21 104.8 140 46.4
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 7.6e-21 104.4 143 46.2
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 1.7e-20 103.2 141 46.8
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 4.9e-20 101.7 149 45.6
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 6.5e-20 101.3 130 43.8
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 6.5e-20 101.3 146 45.2
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 8.4e-20 100.9 141 45.4
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 1.4e-19 100.1 140 42.9
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 1.9e-19 99.8 125 46.4
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 1.9e-19 99.8 140 44.3
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 1.9e-19 99.8 137 44.5
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.5e-19 99.4 125 46.4
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 3.2e-19 99.0 140 42.1
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.2e-19 99.0 135 46.7
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 9.3e-19 97.4 148 46.6
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.6e-18 96.7 135 43.7
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 2.1e-18 96.3 151 45.0
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 2.7e-18 95.9 133 42.1
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 4.6e-18 95.1 139 42.4
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 6.0e-18 94.7 133 42.9
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 6.0e-18 94.7 140 45.0
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 7.9e-18 94.4 140 43.6
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.3e-17 93.6 131 41.2
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 2.3e-17 92.8 123 44.7
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 3.0e-17 92.4 130 41.5
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 5.1e-17 91.7 146 41.8
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 5.1e-17 91.7 144 41.0
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 6.7e-17 91.3 135 45.2
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 2.5e-16 89.4 132 40.2
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 3.3e-16 89.0 128 40.6
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 4.3e-16 88.6 130 43.1
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 4.3e-16 88.6 138 41.3
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 5.7e-16 88.2 135 41.5
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 7.4e-16 87.8 135 43.0
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 7.4e-16 87.8 124 46.0
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 7.4e-16 87.8 132 44.7
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.7e-16 87.4 128 42.2
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.7e-16 87.4 112 44.6
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 1.3e-15 87.0 128 39.1
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 1.3e-15 87.0 138 39.9
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 1.3e-15 87.0 132 39.4
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.6e-15 86.7 135 40.0
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.6e-15 86.7 136 41.2
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.6e-15 86.7 134 40.3
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 1.6e-15 86.7 138 42.8
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 2.2e-15 86.3 130 40.8
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.7e-15 85.5 112 43.8
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.7e-15 85.5 109 48.6
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 3.7e-15 85.5 128 38.3
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 8.2e-15 84.3 153 41.8
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 1.1e-14 84.0 120 44.2
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.4e-14 83.6 118 47.5
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.4e-14 82.8 118 47.5
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.4e-14 82.8 107 48.6
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 3.1e-14 82.4 141 39.7
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 1.5e-13 80.1 102 46.1
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 3.4e-13 79.0 133 39.8
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 5.9e-13 78.2 138 39.9
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.3e-12 77.0 114 43.9
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 2.2e-12 76.3 113 47.8
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 2.9e-12 75.9 114 43.0
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 2.9e-12 75.9 114 43.0
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 3.8e-12 75.5 114 44.7
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 3.8e-12 75.5 116 39.7
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 5.0e-12 75.1 123 39.8
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 8.5e-12 74.3 132 36.4
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 1.4e-11 73.6 143 37.8
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 1.9e-11 73.2 114 42.1
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 2.5e-11 72.8 114 40.4
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 5.5e-11 71.6 114 43.0
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 9.4e-11 70.9 97 45.4
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 9.4e-11 70.9 113 42.5
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 9.4e-11 70.9 114 45.6
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 9.4e-11 70.9 145 33.1
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 1.2e-10 70.5 109 40.4
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 4.6e-10 68.6 124 38.7
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 1.8e-09 66.6 113 40.7
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 1.8e-09 66.6 113 40.7
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 3.9e-09 65.5 113 38.1
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 6.7e-09 64.7 142 35.2
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 6.7e-09 64.7 142 35.2
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 8.8e-09 64.3 113 39.8
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 8.8e-09 64.3 113 39.8
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 1.1e-08 63.9 113 38.9
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 2.5e-08 62.8 149 33.6
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 4.3e-08 62.0 129 34.9
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 7.4e-08 61.2 134 33.6
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 7.4e-08 61.2 110 40.0
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 9.7e-08 60.8 148 32.4
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 2.2e-07 59.7 150 32.0
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 3.7e-07 58.9 148 31.8
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 6.3e-07 58.2 133 33.1
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 8.2e-07 57.8 118 38.1
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 2.4e-06 56.2 116 36.2
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 3.1e-06 55.8 147 31.3
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 3.1e-06 55.8 118 36.4
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 4.1e-06 55.5 128 35.9


User provided reference genes

Program Settings