Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10792 Nelumbo nucifera HOM05D008287 ORTHO05D010110 4.9e-42 174.1 90 100.0
TAR629G1172 Trochodendron aralioides HOM05D008287 ORTHO05D010110 8.3e-26 120.2 85 75.3
Thecc.10G073600 Theobroma cacao HOM05D008287 ORTHO05D010110 3.1e-20 101.7 101 59.4
CiPaw.01G272900 Carya illinoinensis HOM05D008287 ORTHO05D010110 1.2e-19 99.8 104 53.8
Aqoxy1G01238 Aquilegia oxysepala HOM05D008287 ORTHO05D010110 3.4e-19 98.2 84 64.3
Duzib114G0252 Durio zibethinus HOM05D008287 ORTHO05D010110 3.4e-19 98.2 99 53.5
Sc09g0006380 Simmondsia chinensis HOM05D008287 ORTHO05D010110 5.8e-19 97.4 85 61.2
MBI10_g13401_MAGBIO Magnolia biondii HOM05D008287 ORTHO05D010110 4.9e-18 94.4 84 59.5
Gohir.D13G023100 Gossypium hirsutum HOM05D008287 ORTHO05D010110 6.4e-18 94.0 97 51.5
Gorai.013G025800 Gossypium raimondii HOM05D008287 ORTHO05D010110 1.4e-17 92.8 98 51.0
Actinidia38852 Actinidia chinensis HOM05D008287 ORTHO05D010110 4.2e-17 91.3 93 57.0
Gohir.A13G024200 Gossypium hirsutum HOM05D008287 ORTHO05D010110 4.2e-17 91.3 97 50.5
Manes.10G045900 Manihot esculenta HOM05D008287 ORTHO05D010110 4.2e-17 91.3 97 54.6
Migut.F02005 Erythranthe guttata HOM05D008287 ORTHO05D010110 2.7e-16 88.6 94 55.3
Potri.010G222400 Populus trichocarpa HOM05D008287 ORTHO05D010110 1.7e-15 85.9 98 50.0
Phvul.004G082500 Phaseolus vulgaris HOM05D008287 ORTHO05D010110 2.3e-15 85.5 93 50.5
Rhsim09G0151900 Rhododendron simsii HOM05D008287 ORTHO05D010110 3.0e-15 85.1 96 55.2
PGSC0003DMG400012876 Solanum tuberosum HOM05D008287 ORTHO05D010110 3.0e-15 85.1 90 54.4
MSTRG.9186 Avicennia marina HOM05D008287 ORTHO05D010110 8.7e-15 83.6 93 51.6
Solyc04g049407.1 Solanum lycopersicum HOM05D008287 ORTHO05D010110 1.1e-14 83.2 81 56.8
Cfa021511 Carpinus fangiana HOM05D008287 ORTHO05D010110 1.5e-14 82.8 89 57.3
Hma1.2p1_0063F.1_g034480 Hydrangea macrophylla HOM05D008287 ORTHO05D010110 2.5e-14 82.0 77 54.5
Lalb_Chr19g0129701 Lupinus albus HOM05D008287 ORTHO05D010110 3.3e-14 81.6 91 49.5
Sopen04g019400 Solanum pennellii HOM05D008287 ORTHO05D010110 4.3e-14 81.3 75 52.0
Atru.chr12.751 Acer truncatum HOM05D008287 ORTHO05D010110 7.3e-14 80.5 100 52.0
Prupe.2G213800 Prunus persica HOM05D008287 ORTHO05D010110 2.1e-13 79.0 91 50.5
Sabra10G0172000 Salix brachista HOM05D008287 ORTHO05D010110 2.8e-13 78.6 89 52.8
Ciclev10033160m.g Citrus clementina HOM05D008287 ORTHO05D010110 6.2e-13 77.4 98 49.0
Glyma.16G154900 Glycine max HOM05D008287 ORTHO05D010110 8.1e-13 77.0 94 48.9
ClCG05G021010 Citrullus lanatus HOM05D008287 ORTHO05D010110 1.4e-12 76.3 91 52.7
CsaV3_5G036300 Cucumis sativus L. HOM05D008287 ORTHO05D010110 1.4e-12 76.3 100 49.0
Atru.chr12.776 Acer truncatum HOM05D008287 ORTHO05D010110 3.1e-12 75.1 100 48.0
Cc06_g14360 Coffea canephora HOM05D008287 ORTHO05D010110 5.3e-12 74.3 110 44.5
Nitab4.5_0000575g0160 Nicotiana tabacum HOM05D008287 ORTHO05D010110 6.9e-12 73.9 95 45.3
Carub.0008s0883 Capsella rubella HOM05D013386 ORTHO05D010110 1.2e-11 73.2 90 53.3
Glyma.02G073500 Glycine max HOM05D008287 ORTHO05D010110 1.2e-11 73.2 97 45.4
HanXRQChr01g0011461 Helianthus annuus HOM05D008287 ORTHO05D010110 1.2e-11 73.2 94 46.8
AT5G49015 Arabidopsis thaliana HOM05D013386 ORTHO05D010110 2.6e-11 72.0 89 48.3
FAN01G1692 Fragaria x ananassa HOM05D008287 ORTHO05D010110 3.4e-11 71.6 92 50.0
FAN10G2561 Fragaria x ananassa HOM05D008287 ORTHO05D010110 3.4e-11 71.6 92 50.0
FvH4_7g19600 Fragaria vesca HOM05D008287 ORTHO05D010110 5.8e-11 70.9 92 48.9
MD01G1108600 Malus domestica HOM05D008287 ORTHO05D010110 7.6e-11 70.5 104 47.1
TPR.G822 Trifolium pratense HOM05D008287 ORTHO05D010110 9.9e-11 70.1 95 43.2
VMungo0464G1886 Vigna mungo HOM05D008287 ORTHO05D010110 9.9e-11 70.1 87 48.3
Nitab4.5_0010206g0030 Nicotiana tabacum HOM05D008287 ORTHO05D010110 1.3e-10 69.7 86 47.7
Thhalv10005354m.g Eutrema salsugineum HOM05D013386 ORTHO05D010110 1.7e-10 69.3 90 47.8
AL8G22370 Arabidopsis lyrata HOM05D013386 ORTHO05D010110 2.2e-10 68.9 89 47.2
RcHm_v2.0_Chr1g0363411 Rosa chinensis HOM05D008287 ORTHO05D010110 4.9e-10 67.8 92 47.8
Sed0007335 Sechium edule HOM05D008287 ORTHO05D010110 1.1e-09 66.6 98 46.9
unitig_899.g14438 Utricularia gibba HOM05D008287 ORTHO05D010110 1.4e-09 66.2 75 44.0
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 1.9e-09 65.9 76 50.0
Potri.008G039901 Populus trichocarpa HOM05D008287 ORTHO05D010110 1.9e-09 65.9 92 37.0
arahy.Tifrunner.gnm1.ann1.7IIA7U Arachis hypogaea HOM05D008287 ORTHO05D010110 4.2e-09 64.7 94 41.5
Medtr6g033505 Medicago truncatula HOM05D008287 ORTHO05D010110 4.2e-09 64.7 91 40.7
ECA238G2524 Erigeron canadensis HOM05D008287 ORTHO05D010110 7.1e-09 63.9 86 40.7
CARHR286230 Cardamine hirsuta HOM05D013386 ORTHO05D010110 9.3e-09 63.5 89 44.9
arahy.Tifrunner.gnm1.ann1.LAB5TB Arachis hypogaea HOM05D008287 ORTHO05D010110 1.6e-08 62.8 94 40.4
FAN03G0373 Fragaria x ananassa HOM05D008287 ORTHO05D010110 1.6e-08 62.8 76 50.0
Aa31sc101G40 Aethionema arabicum HOM05D013386 ORTHO05D010110 3.5e-08 61.6 90 40.0
Eucgr.G02829 Eucalyptus grandis HOM05D055458 ORTHO05D010110 3.5e-08 61.6 95 42.1
PGR142G4013 Punica granatum HOM05D008287 ORTHO05D010110 2.3e-07 58.9 105 30.5
Sabra08G0027300 Salix brachista HOM05D008287 ORTHO05D010110 3.0e-07 58.5 35 65.7
CSS0035042 Camellia sinensis var. sinensis HOM05D008287 ORTHO05D010110 3.9e-07 58.2 29 82.8
SGA_v2.0_scaffold62G21430 Striga asiatica HOM05D008287 ORTHO05D010110 3.9e-07 58.2 57 50.9
Sabra17G0123100 Salix brachista HOM05D008287 ORTHO05D010110 8.7e-07 57.0 62 45.2
SEGI_26620 Sequoiadendron giganteum HOM05D008287 ORTHO05D010110 1.5e-06 56.2 102 38.2
Hund12046 Selenicereus undatus HOM05D008287 ORTHO05D010110 4.3e-06 54.7 79 38.0


User provided reference genes

Program Settings