Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.6e-169 599.4 311 100.0
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.2e-142 509.2 313 85.3
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 7.3e-138 494.2 313 81.2
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 5.3e-136 488.0 313 79.6
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 3.5e-132 475.3 312 76.9
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 9.6e-130 467.2 311 75.9
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.6e-129 466.5 312 75.6
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 4.0e-128 461.8 313 75.4
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.6e-127 459.1 312 74.0
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 4.5e-127 458.4 302 76.2
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.3e-126 456.8 305 75.7
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.3e-126 456.8 308 74.0
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.7e-126 456.4 306 76.8
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 3.8e-126 455.3 313 74.8
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 4.2e-125 451.8 304 74.3
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 4.2e-125 451.8 304 74.3
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 5.5e-125 451.4 311 73.0
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 7.1e-125 451.1 305 74.8
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.1e-124 449.5 312 72.8
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.5e-124 448.7 312 75.0
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.5e-124 448.7 306 75.8
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 6.0e-124 448.0 306 75.5
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.0e-123 447.2 304 76.0
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 1.3e-123 446.8 305 72.5
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 2.3e-123 446.0 304 73.0
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 3.0e-123 445.7 312 70.5
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 5.1e-123 444.9 306 75.2
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.7e-123 444.5 304 74.0
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 8.7e-123 444.1 313 73.5
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.1e-122 443.7 312 71.8
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 1.1e-122 443.7 312 71.5
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.1e-122 443.7 304 74.0
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.5e-122 442.6 289 76.8
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 2.5e-122 442.6 305 74.8
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.3e-122 442.2 310 74.2
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 3.3e-122 442.2 313 72.5
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 4.3e-122 441.8 300 72.7
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 1.3e-121 440.3 312 73.4
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.6e-121 439.9 307 74.6
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.1e-121 439.5 310 70.3
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.2e-121 438.0 304 72.0
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 6.2e-121 438.0 304 72.0
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 6.2e-121 438.0 312 73.4
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.4e-120 436.8 312 72.4
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.5e-119 433.3 314 71.3
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 1.5e-119 433.3 312 72.8
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.0e-119 433.0 304 71.4
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 4.5e-119 431.8 304 71.4
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 4.5e-119 431.8 312 69.6
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 5.8e-119 431.4 314 71.3
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 5.8e-119 431.4 304 69.4
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 7.6e-119 431.0 313 70.6
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.0e-118 430.6 295 72.5
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.0e-118 430.6 316 70.6
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 2.9e-118 429.1 300 72.3
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 6.5e-118 427.9 315 70.2
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 8.4e-118 427.6 317 71.0
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 1.1e-117 427.2 303 70.3
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.2e-117 425.6 310 70.6
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 7.1e-117 424.5 303 70.0
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 7.1e-117 424.5 304 71.7
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 7.1e-117 424.5 310 67.7
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 7.1e-117 424.5 303 70.0
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.6e-116 423.3 312 72.8
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.6e-116 423.3 300 70.7
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 2.1e-116 422.9 302 71.2
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 2.1e-116 422.9 311 67.5
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 2.7e-116 422.5 312 72.4
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 3.5e-116 422.2 306 70.6
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.0e-115 420.6 283 75.6
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 2.3e-115 419.5 306 69.6
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 3.0e-115 419.1 312 68.3
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 3.9e-115 418.7 312 69.2
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 5.1e-115 418.3 300 73.0
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.5e-114 416.8 293 70.0
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.5e-114 416.8 385 58.4
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 1.5e-114 416.8 349 64.2
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 3.3e-114 415.6 345 63.5
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 7.4e-114 414.5 291 72.5
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 7.4e-114 414.5 309 66.7
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.3e-113 413.7 291 72.5
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 1.6e-113 413.3 356 61.2
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 2.8e-113 412.5 302 69.2
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 3.7e-113 412.1 304 68.1
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 4.8e-113 411.8 310 67.1
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.4e-112 410.2 262 77.1
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 1.8e-112 409.8 282 74.1
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 2.4e-112 409.5 312 66.0
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 5.3e-112 408.3 305 68.9
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 6.9e-112 407.9 304 67.4
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 6.9e-112 407.9 300 69.0
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 6.9e-112 407.9 304 67.8
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 9.0e-112 407.5 312 66.7
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 9.0e-112 407.5 270 75.6
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.2e-111 407.1 304 67.4
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 1.2e-111 407.1 282 73.4
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.5e-111 406.8 299 70.9
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 2.0e-111 406.4 304 67.4
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 2.6e-111 406.0 343 63.8
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 4.5e-111 405.2 347 61.1
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 4.5e-111 405.2 305 66.9
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 4.5e-111 405.2 300 67.7
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.9e-111 404.8 297 70.0
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 7.7e-111 404.4 284 70.4
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 1.0e-110 404.1 305 66.6
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 1.0e-110 404.1 304 66.8
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.7e-110 403.3 300 67.3
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 3.8e-110 402.1 304 66.8
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 8.5e-110 401.0 305 65.9
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 8.5e-110 401.0 297 70.4
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 1.4e-109 400.2 309 66.3
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 3.2e-109 399.1 312 66.7
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 5.5e-109 398.3 304 67.4
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.2e-108 397.1 311 67.8
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 2.1e-108 396.4 304 65.8
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 4.6e-108 395.2 301 67.1
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 4.6e-108 395.2 305 64.6
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 2.0e-106 389.8 305 64.6
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.7e-105 385.6 261 75.5
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 3.7e-105 385.6 269 70.3
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.4e-104 383.6 267 72.7
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.6e-103 379.4 278 67.3
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.9e-102 375.9 301 64.1
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 6.5e-102 374.8 309 64.7
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 6.5e-102 374.8 303 63.0
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.1e-101 374.0 309 63.1
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 7.4e-98 361.3 287 63.8
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 4.7e-92 342.0 225 75.1
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 1.0e-91 340.9 270 61.5
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 6.3e-89 331.6 286 55.6
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 3.1e-88 329.3 280 57.1
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 2.0e-87 326.6 312 54.2
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.6e-84 315.8 225 72.9
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.4e-80 303.9 280 54.3
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 1.4e-80 303.9 277 59.6
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 4.5e-79 298.9 292 53.4
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 2.5e-77 293.1 291 52.6
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 5.5e-77 292.0 285 51.2
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.2e-76 290.8 285 50.9
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 2.7e-76 289.7 282 54.6
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 2.3e-75 286.6 276 54.7
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.1e-72 276.2 236 57.6
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 3.1e-72 276.2 225 61.3
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 3.5e-71 272.7 291 54.3
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 4.5e-71 272.3 206 66.0
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.1e-68 263.5 329 52.3
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 4.3e-61 239.2 195 64.6
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 8.9e-59 231.5 210 53.3
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 5.8e-58 228.8 198 60.1
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 9.8e-58 228.0 191 62.3
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 9.2e-56 221.5 222 50.9
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 6.6e-54 215.3 150 70.7
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 1.2e-52 211.1 185 60.5
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 1.4e-51 207.6 150 70.7
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.5e-50 204.1 290 39.3
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 4.3e-45 186.0 152 63.2
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 6.8e-35 152.1 279 31.2
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 6.6e-30 135.6 318 28.0
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.5e-29 133.7 76 89.5
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 2.4e-27 127.1 105 63.8
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 1.1e-24 118.2 208 33.7
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 2.7e-23 113.6 115 54.8
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.9e-21 107.5 134 50.0
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 1.9e-21 107.5 214 29.4
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 9.6e-21 105.1 265 30.2
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.2e-15 88.2 187 39.0
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 5.3e-11 72.8 59 59.3
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 1.9e-08 64.3 39 74.4


User provided reference genes

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