Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 4.3e-125 451.4 247 100.0
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 9.1e-107 390.6 219 100.0
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 5.9e-90 334.7 219 74.4
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 4.1e-83 312.0 212 70.3
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 9.1e-83 310.8 217 79.7
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 9.1e-83 310.8 214 68.7
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 1.2e-82 310.5 214 70.1
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.6e-82 310.1 218 69.3
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 2.0e-82 309.7 218 68.8
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 2.7e-82 309.3 219 80.8
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 3.5e-82 308.9 228 67.5
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 1.0e-81 307.4 214 68.7
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 1.3e-81 307.0 212 71.2
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.7e-81 306.6 212 69.3
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.3e-81 306.2 212 70.3
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.3e-81 306.2 217 67.7
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 3.8e-81 305.4 218 67.4
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 5.0e-81 305.1 212 69.3
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 6.6e-81 304.7 218 69.3
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 6.6e-81 304.7 218 67.0
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.1e-80 303.9 228 77.6
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.1e-80 303.9 218 67.4
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 2.5e-80 302.8 219 79.0
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.2e-80 302.0 212 68.9
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 9.5e-80 300.8 218 68.3
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 1.2e-79 300.4 223 78.5
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 2.1e-79 299.7 218 68.8
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 6.1e-79 298.1 219 78.1
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 1.0e-78 297.4 219 66.7
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.8e-78 296.6 213 79.8
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.8e-78 296.6 228 76.8
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 2.3e-78 296.2 213 68.1
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 3.0e-78 295.8 214 66.4
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 3.0e-78 295.8 219 77.2
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 3.0e-78 295.8 219 77.2
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 8.9e-78 294.3 214 77.1
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 8.9e-78 294.3 223 77.1
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.5e-77 293.5 218 77.5
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.5e-77 293.5 219 66.2
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 2.0e-77 293.1 218 76.1
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 2.0e-77 293.1 218 66.1
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 3.4e-77 292.4 218 76.1
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 3.4e-77 292.4 214 76.6
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 9.8e-77 290.8 218 67.4
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 9.8e-77 290.8 218 64.7
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 1.7e-76 290.0 213 75.6
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 3.7e-76 288.9 213 75.6
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 6.3e-76 288.1 217 65.9
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 8.3e-76 287.7 215 64.7
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 2.4e-75 286.2 216 65.7
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 2.4e-75 286.2 221 65.2
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 3.2e-75 285.8 215 66.0
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 4.1e-75 285.4 210 77.1
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 5.4e-75 285.0 213 64.8
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 7.0e-75 284.6 209 76.1
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 1.2e-74 283.9 213 68.5
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 1.6e-74 283.5 212 67.0
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 2.0e-74 283.1 213 65.7
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 2.0e-74 283.1 209 65.1
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 4.6e-74 282.0 215 64.7
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 5.9e-74 281.6 213 65.7
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 5.9e-74 281.6 221 75.1
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 1.3e-73 280.4 218 74.8
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 1.7e-73 280.0 210 64.8
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 3.9e-73 278.9 212 65.1
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 5.0e-73 278.5 216 64.4
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 6.6e-73 278.1 215 63.7
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 6.6e-73 278.1 213 62.9
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 6.6e-73 278.1 213 62.9
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 6.6e-73 278.1 216 70.8
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 8.6e-73 277.7 210 64.3
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 8.6e-73 277.7 222 74.8
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.1e-72 277.3 219 64.4
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.1e-72 277.3 219 64.4
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.1e-72 277.3 219 64.4
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.1e-72 277.3 219 64.4
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.1e-72 277.3 219 64.4
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 1.1e-72 277.3 210 75.7
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.5e-72 276.9 217 63.1
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 1.5e-72 276.9 219 62.6
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 1.9e-72 276.6 213 62.9
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 1.9e-72 276.6 210 66.7
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 2.5e-72 276.2 209 65.6
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 4.3e-72 275.4 213 73.2
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 5.6e-72 275.0 210 63.3
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 5.6e-72 275.0 210 63.3
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 7.3e-72 274.6 210 62.9
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 7.3e-72 274.6 210 63.3
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 2.8e-71 272.7 222 59.5
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 3.6e-71 272.3 221 62.4
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 2.3e-70 269.6 215 62.3
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 6.8e-70 268.1 212 62.7
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 1.2e-69 267.3 213 62.0
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 1.2e-69 267.3 213 70.9
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 1.2e-69 267.3 213 70.9
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 1.5e-69 266.9 209 60.8
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 2.0e-69 266.5 217 59.4
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 2.6e-69 266.2 212 74.1
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 5.8e-69 265.0 218 61.0
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 1.3e-68 263.8 222 59.0
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.7e-68 263.5 218 60.6
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 3.2e-67 259.2 217 62.2
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 3.2e-67 259.2 217 62.2
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 4.1e-67 258.8 215 60.9
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 1.1e-64 250.8 209 67.9
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 1.5e-64 250.4 212 59.4
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 1.5e-64 250.4 205 60.5
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 1.9e-64 250.0 210 60.0
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 4.3e-64 248.8 215 58.6
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 9.5e-64 247.7 217 60.4
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 5.2e-62 241.9 188 62.8
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.2e-61 240.7 163 73.6
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 2.0e-61 240.0 221 55.7
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 1.3e-60 237.3 212 67.5
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 8.3e-60 234.6 214 54.2
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.1e-59 234.2 164 70.7
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 3.0e-57 226.1 153 69.3
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.3e-56 222.6 222 64.4
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 9.5e-56 221.1 212 50.5
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 2.1e-55 219.9 223 48.9
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 3.6e-55 219.2 215 50.7
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 3.1e-54 216.1 209 51.2
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 5.2e-54 215.3 218 52.8
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 2.2e-52 209.9 130 73.8
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 8.4e-52 208.0 135 72.6
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 4.1e-51 205.7 159 65.4
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 6.0e-50 201.8 162 71.0
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.3e-49 200.7 213 61.5
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 5.1e-49 198.7 154 63.6
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 1.5e-45 187.2 218 56.9
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 5.8e-45 185.3 132 65.9
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 7.1e-43 178.3 223 58.3
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 2.3e-41 173.3 137 62.8
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 6.6e-41 171.8 210 47.6
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 1.9e-40 170.2 163 52.8
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 2.3e-33 146.7 97 71.1
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 1.1e-30 137.9 89 73.0
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 3.1e-30 136.3 97 90.7
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 5.3e-14 82.4 193 31.6
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 1.1e-06 58.2 110 35.5
HanXRQChr14g0440521 Helianthus annuus HOM05D003144 ORTHO05D003539 3.1e-06 56.6 106 32.1
PRCOL_00003536 Prasinoderma coloniale HOM05D003144 ORTHO05D003539 3.1e-06 56.6 128 31.2
Actinidia19199 Actinidia chinensis HOM05D003144 ORTHO05D003539 9.0e-06 55.1 117 29.1


User provided reference genes

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