Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 2.1e-110 402.5 225 100.0
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 8.3e-107 390.6 219 100.0
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.4e-90 336.7 220 74.5
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 1.5e-84 316.6 219 79.9
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 1.5e-84 316.6 216 69.0
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 3.4e-84 315.5 225 67.6
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 2.2e-83 312.8 215 70.2
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 2.9e-83 312.4 212 70.3
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 4.9e-83 311.6 220 68.6
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 6.4e-83 311.2 220 80.9
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 8.3e-83 310.8 220 69.1
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 2.4e-82 309.3 214 71.0
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 3.2e-82 308.9 214 69.2
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.1e-82 308.5 214 70.1
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 5.4e-82 308.1 221 79.2
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 5.4e-82 308.1 223 68.6
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 9.2e-82 307.4 214 68.7
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 9.2e-82 307.4 214 69.2
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 9.2e-82 307.4 214 69.2
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.1e-81 306.2 220 69.1
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 2.1e-81 306.2 220 67.3
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 3.5e-81 305.4 222 67.1
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 7.8e-81 304.3 214 68.7
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 1.3e-80 303.5 221 78.3
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.7e-80 303.1 223 78.9
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 3.0e-80 302.4 220 68.2
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 3.9e-80 302.0 218 67.0
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 5.1e-80 301.6 220 68.6
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 1.9e-79 299.7 218 79.8
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 4.3e-79 298.5 215 79.5
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 7.3e-79 297.7 225 76.0
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 7.3e-79 297.7 225 76.0
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 9.5e-79 297.4 225 64.9
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.6e-78 296.6 213 68.1
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 2.1e-78 296.2 220 65.0
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 2.8e-78 295.8 223 78.0
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 3.6e-78 295.4 220 77.3
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 4.7e-78 295.0 220 65.9
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 4.7e-78 295.0 221 66.1
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 8.1e-78 294.3 220 75.9
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 8.1e-78 294.3 214 77.1
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 1.1e-77 293.9 218 78.4
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 1.4e-77 293.5 220 75.9
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 1.4e-77 293.5 217 76.0
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 3.1e-77 292.4 215 75.3
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 3.1e-77 292.4 220 67.3
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 3.1e-77 292.4 228 64.5
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 1.2e-76 290.4 215 75.3
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 4.4e-76 288.5 219 63.9
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 4.4e-76 288.5 217 65.9
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 7.6e-76 287.7 219 65.8
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 2.2e-75 286.2 217 75.6
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 3.7e-75 285.4 213 64.8
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 3.7e-75 285.4 215 66.5
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 3.7e-75 285.4 223 65.0
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 4.9e-75 285.0 216 68.1
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 4.9e-75 285.0 209 76.1
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 1.1e-74 283.9 215 63.7
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 1.4e-74 283.5 217 64.5
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 1.4e-74 283.5 213 65.7
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 4.1e-74 282.0 213 65.7
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 4.1e-74 282.0 226 73.9
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 4.1e-74 282.0 218 64.7
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 4.1e-74 282.0 218 64.7
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 4.1e-74 282.0 218 64.7
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 4.1e-74 282.0 218 64.7
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 4.1e-74 282.0 218 64.7
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 1.2e-73 280.4 210 64.8
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 1.2e-73 280.4 223 73.5
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.2e-73 280.4 221 63.8
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 1.6e-73 280.0 217 64.1
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 2.1e-73 279.6 217 63.6
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 4.6e-73 278.5 213 62.9
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 4.6e-73 278.5 213 62.9
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 4.6e-73 278.5 217 63.1
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 4.6e-73 278.5 220 62.7
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 4.6e-73 278.5 216 70.8
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 6.0e-73 278.1 227 73.6
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 6.0e-73 278.1 217 74.2
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 1.0e-72 277.3 221 61.5
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 1.0e-72 277.3 217 64.1
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 1.0e-72 277.3 219 62.6
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 1.3e-72 276.9 210 66.7
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 3.0e-72 275.8 213 73.2
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 3.9e-72 275.4 210 63.3
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 3.9e-72 275.4 210 63.3
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 5.1e-72 275.0 210 62.9
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 5.1e-72 275.0 210 63.3
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 5.6e-71 271.6 219 59.4
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 5.6e-71 271.6 212 63.7
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 1.2e-70 270.4 220 61.4
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 1.6e-70 270.0 215 62.3
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 4.7e-70 268.5 227 58.6
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 8.1e-70 267.7 213 62.0
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 8.1e-70 267.7 213 70.9
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 8.1e-70 267.7 213 70.9
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 1.1e-69 267.3 209 60.8
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 1.4e-69 266.9 217 59.4
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.8e-69 266.5 212 74.1
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 3.1e-69 265.8 221 60.6
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 6.8e-69 264.6 221 60.2
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 5.8e-68 261.5 218 62.4
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 5.8e-68 261.5 218 62.4
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 2.9e-67 259.2 215 60.9
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 7.8e-65 251.1 209 67.9
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 1.0e-64 250.8 212 59.4
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 1.0e-64 250.8 215 59.1
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 1.3e-64 250.4 205 60.5
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 3.0e-64 249.2 215 58.6
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 3.9e-64 248.8 222 59.5
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 4.8e-62 241.9 188 62.8
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 1.1e-61 240.7 220 56.4
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.4e-61 239.6 158 75.3
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 5.3e-61 238.4 215 67.0
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 7.6e-60 234.6 214 54.2
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 9.9e-60 234.2 159 73.0
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 9.3e-58 227.6 155 69.0
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 2.3e-56 223.0 215 66.0
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 6.6e-56 221.5 212 50.5
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 2.5e-55 219.5 215 50.7
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 5.6e-55 218.4 212 50.5
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 2.1e-54 216.5 209 51.2
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 3.6e-54 215.7 218 52.8
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 2.0e-52 209.9 130 73.8
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 3.4e-52 209.1 134 73.9
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 3.8e-51 205.7 159 65.4
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 3.2e-50 202.6 217 61.3
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 5.5e-50 201.8 162 71.0
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 2.1e-49 199.9 156 63.5
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 1.1e-45 187.6 218 56.9
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 1.4e-45 187.2 139 64.0
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 4.9e-43 178.7 216 59.7
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 4.6e-41 172.2 210 47.6
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 6.0e-41 171.8 139 62.6
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 1.8e-40 170.2 163 52.8
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 3.5e-33 146.0 93 73.1
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 4.3e-31 139.0 96 69.8
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 2.8e-30 136.3 97 90.7
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 4.8e-14 82.4 193 31.6
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 9.7e-07 58.2 110 35.5
HanXRQChr14g0440521 Helianthus annuus HOM05D003144 ORTHO05D003539 2.8e-06 56.6 106 32.1
PRCOL_00003536 Prasinoderma coloniale HOM05D003144 ORTHO05D003539 2.8e-06 56.6 128 31.2
Actinidia19199 Actinidia chinensis HOM05D003144 ORTHO05D003539 8.2e-06 55.1 117 29.1


User provided reference genes

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