Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 9.1e-59 229.9 110 100.0
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 7.1e-27 124.0 106 63.2
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 9.5e-24 113.6 103 58.3
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 1.4e-22 109.8 102 56.9
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.8e-22 109.4 107 54.2
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 1.5e-21 106.3 102 56.9
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 3.4e-21 105.1 102 56.9
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.4e-21 104.8 102 54.9
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 4.4e-21 104.8 83 57.8
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 4.4e-21 104.8 102 56.9
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 5.8e-21 104.4 103 54.4
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 3.8e-20 101.7 105 51.4
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 4.9e-20 101.3 102 53.9
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.9e-20 101.3 102 53.9
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.9e-20 101.3 102 53.9
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 8.4e-20 100.5 105 50.5
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 1.4e-19 99.8 102 52.0
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.1e-19 98.2 102 52.9
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 4.1e-19 98.2 102 51.0
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 4.1e-19 98.2 104 51.9
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 4.1e-19 98.2 113 48.7
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 5.4e-19 97.8 101 56.4
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 5.4e-19 97.8 102 53.9
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 5.4e-19 97.8 101 55.4
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 1.6e-18 96.3 101 49.5
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 1.6e-18 96.3 104 52.9
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.6e-18 96.3 102 53.9
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 2.1e-18 95.9 102 49.0
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 2.1e-18 95.9 102 51.0
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 2.7e-18 95.5 102 52.9
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 2.7e-18 95.5 103 52.4
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 7.8e-18 94.0 102 53.9
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.0e-17 93.6 103 52.4
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 8.7e-17 90.5 107 47.7
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 8.7e-17 90.5 78 55.1
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 4.3e-16 88.2 102 48.0
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 7.3e-16 87.4 102 47.1
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 7.3e-16 87.4 102 50.0
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 9.6e-16 87.0 104 50.0
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 9.6e-16 87.0 101 46.5
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 9.6e-16 87.0 102 46.1
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 1.2e-15 86.7 103 49.5
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 1.2e-15 86.7 98 49.0
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 2.1e-15 85.9 102 48.0
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 2.8e-15 85.5 103 48.5
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 2.8e-15 85.5 102 46.1
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.7e-15 84.7 102 48.0
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 1.1e-14 83.6 102 47.1
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.8e-14 82.8 102 45.1
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 2.4e-14 82.4 101 46.5
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 4.0e-14 81.6 103 46.6
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 4.0e-14 81.6 102 51.0
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 5.2e-14 81.3 105 47.6
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 5.2e-14 81.3 101 44.6
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 9.0e-14 80.5 101 44.6
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.2e-13 80.1 104 46.2
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 1.5e-13 79.7 105 47.6
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 1.5e-13 79.7 102 47.1
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 2.0e-13 79.3 105 43.8
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 2.6e-13 79.0 104 45.2
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 5.8e-13 77.8 100 47.0
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 7.6e-13 77.4 102 45.1
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 9.9e-13 77.0 114 39.5
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.3e-12 76.6 103 44.7
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.3e-12 76.6 102 47.1
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 1.7e-12 76.3 102 47.1
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 2.2e-12 75.9 103 43.7
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 2.2e-12 75.9 103 44.7
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 2.9e-12 75.5 102 49.0
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 3.8e-12 75.1 103 44.7
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 3.8e-12 75.1 105 41.9
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 3.8e-12 75.1 112 42.0
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 4.9e-12 74.7 79 45.6
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 8.4e-12 73.9 110 40.9
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 1.4e-11 73.2 104 42.3
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 1.4e-11 73.2 102 42.2
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 1.9e-11 72.8 104 44.2
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 2.4e-11 72.4 109 42.2
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 2.4e-11 72.4 100 43.0
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 5.4e-11 71.2 103 43.7
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 1.2e-10 70.1 110 43.6
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.6e-10 69.7 103 41.7
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.6e-10 69.7 80 45.0
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 1.6e-10 69.7 77 45.5
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 2.1e-10 69.3 109 41.3
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 2.1e-10 69.3 111 40.5
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.7e-10 68.9 50 66.0
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 3.5e-10 68.6 50 68.0
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 6.0e-10 67.8 105 39.0
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 1.0e-09 67.0 51 70.6
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.3e-09 65.9 78 43.6
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 3.9e-09 65.1 48 64.6
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 6.6e-09 64.3 104 41.3
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.1e-08 63.5 108 39.8
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.5e-08 62.4 47 61.7
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.5e-08 62.4 47 61.7
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 2.5e-08 62.4 65 49.2
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 2.5e-08 62.4 102 40.2
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 3.3e-08 62.0 85 44.7
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.3e-08 62.0 50 68.0
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 5.6e-08 61.2 103 40.8
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 5.6e-08 61.2 103 40.8
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 9.6e-08 60.5 108 38.9
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 2.8e-07 58.9 102 42.2
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 8.1e-07 57.4 106 38.7
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 2.4e-06 55.8 48 56.2
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 4.0e-06 55.1 47 59.6
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 5.3e-06 54.7 47 61.7
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 6.9e-06 54.3 100 40.0


User provided reference genes

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