Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 4.5e-116 421.4 229 100.0
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.6e-108 395.6 229 93.9
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 2.2e-94 349.4 229 84.7
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 8.5e-83 310.8 227 79.3
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 1.2e-81 307.0 227 75.8
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 5.1e-80 301.6 227 74.9
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 5.7e-79 298.1 228 74.6
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.3e-78 297.0 227 68.3
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 2.2e-78 296.2 228 74.6
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 4.8e-78 295.0 227 67.8
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 6.3e-78 294.7 229 69.9
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 8.2e-78 294.3 233 70.0
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.1e-77 293.9 227 67.4
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.8e-77 293.1 231 70.1
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 2.4e-77 292.7 228 67.5
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 2.4e-77 292.7 237 68.8
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.1e-77 292.4 227 69.6
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 5.3e-77 291.6 235 66.4
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 5.3e-77 291.6 230 68.7
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 7.0e-77 291.2 225 72.9
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 2.6e-76 289.3 225 69.3
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 5.9e-76 288.1 226 69.0
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 1.0e-75 287.3 229 66.8
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 1.0e-75 287.3 226 67.7
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 2.2e-75 286.2 227 72.7
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 2.9e-75 285.8 227 70.9
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 2.9e-75 285.8 234 68.8
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 2.9e-75 285.8 236 67.4
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 2.9e-75 285.8 231 68.0
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 6.5e-75 284.6 237 65.0
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 1.1e-74 283.9 227 65.2
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.1e-74 283.9 233 64.4
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 5.5e-74 281.6 237 68.4
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 5.5e-74 281.6 227 69.6
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 9.4e-74 280.8 231 68.8
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 1.2e-73 280.4 231 66.7
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 1.6e-73 280.0 232 65.1
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 2.1e-73 279.6 219 72.6
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 3.6e-73 278.9 236 63.6
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 3.6e-73 278.9 229 66.8
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 4.7e-73 278.5 198 77.3
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 6.1e-73 278.1 235 62.6
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 8.0e-73 277.7 227 63.9
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.0e-72 277.3 227 63.9
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.0e-72 277.3 233 62.2
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 1.4e-72 276.9 236 61.4
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 1.4e-72 276.9 182 72.5
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 1.4e-72 276.9 230 64.3
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 1.8e-72 276.6 228 64.5
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 3.9e-72 275.4 231 68.8
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 5.2e-72 275.0 226 69.5
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 5.2e-72 275.0 234 64.5
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 6.7e-72 274.6 226 64.6
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 8.8e-72 274.2 177 73.4
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 1.1e-71 273.9 220 70.5
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 2.0e-71 273.1 230 70.4
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 2.0e-71 273.1 227 69.2
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 2.6e-71 272.7 232 67.7
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 2.6e-71 272.7 227 62.1
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 1.3e-70 270.4 233 61.8
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 1.7e-70 270.0 227 62.6
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 2.8e-70 269.2 223 66.8
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 2.8e-70 269.2 225 62.7
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 3.7e-70 268.9 190 77.9
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 8.2e-70 267.7 233 60.1
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 8.2e-70 267.7 233 60.1
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 1.1e-69 267.3 229 69.0
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 1.1e-69 267.3 233 67.4
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 1.8e-69 266.5 179 81.0
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 2.4e-69 266.2 178 79.2
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 3.1e-69 265.8 223 66.4
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 3.1e-69 265.8 223 66.4
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 4.1e-69 265.4 193 72.0
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 4.1e-69 265.4 223 66.8
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 9.1e-69 264.2 227 60.8
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-68 263.8 223 65.5
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.6e-68 263.5 233 62.7
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 2.6e-68 262.7 232 59.5
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 2.6e-68 262.7 227 59.9
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 5.9e-68 261.5 223 63.7
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 5.9e-68 261.5 223 65.9
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 5.9e-68 261.5 223 63.7
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 5.9e-68 261.5 223 65.9
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 7.7e-68 261.2 223 65.5
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 7.7e-68 261.2 223 65.0
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 1.3e-67 260.4 226 64.2
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 2.2e-67 259.6 223 60.1
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 2.9e-67 259.2 223 62.8
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.9e-67 259.2 224 59.8
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 5.0e-67 258.5 230 65.7
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 6.5e-67 258.1 227 57.3
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 6.5e-67 258.1 176 80.7
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 6.5e-67 258.1 237 58.6
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.1e-66 257.3 234 58.5
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.5e-66 256.9 223 59.2
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.5e-66 256.1 201 62.7
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 3.2e-66 255.8 183 75.4
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 7.2e-66 254.6 183 74.9
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 6.1e-65 251.5 217 68.7
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 6.1e-65 251.5 182 74.7
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.4e-64 250.4 200 65.0
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 6.8e-64 248.1 209 67.5
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.0e-63 246.5 177 75.1
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 4.1e-61 238.8 223 65.5
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 7.0e-61 238.0 177 74.0
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 7.7e-60 234.6 172 71.5
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 8.3e-54 214.5 136 73.5
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 7.0e-45 184.9 129 66.7
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 2.3e-43 179.9 182 57.7
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 2.9e-43 179.5 153 56.2
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 5.0e-43 178.7 133 63.2
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.1e-42 177.6 133 62.4
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.5e-42 177.2 133 62.4
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 1.9e-42 176.8 132 62.9
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.9e-42 176.8 132 62.9
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.9e-42 176.8 133 62.4
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 4.3e-42 175.6 136 59.6
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 5.6e-42 175.3 129 63.6
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 5.6e-42 175.3 136 61.0
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 7.3e-42 174.9 133 62.4
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.1e-41 173.3 156 55.1
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 2.8e-41 172.9 132 61.4
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 2.8e-41 172.9 132 61.4
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 2.8e-41 172.9 132 61.4
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 3.6e-41 172.6 132 61.4
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 3.6e-41 172.6 132 61.4
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 2.3e-40 169.9 228 46.9
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.7e-38 163.7 102 78.4
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 3.7e-38 162.5 161 50.3
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 1.4e-32 144.1 101 77.2
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 4.0e-32 142.5 105 78.1
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.9e-30 136.3 150 48.7
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 3.7e-30 136.0 150 47.3
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 3.2e-29 132.9 228 45.6
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.5e-28 129.4 150 46.0
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 1.1e-26 124.4 143 44.1
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 1.2e-25 120.9 226 43.8
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 1.1e-24 117.9 129 58.9
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.1e-24 117.9 134 53.7
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.7e-22 110.5 197 40.1
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 5.4e-21 105.5 145 37.2
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 2.7e-20 103.2 150 36.7
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 2.7e-20 103.2 88 59.1
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 5.1e-19 99.0 167 34.1
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.9e-18 97.1 73 67.1
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 1.9e-18 97.1 71 59.2
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 2.1e-17 93.6 103 54.4
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 6.4e-14 82.0 84 52.4
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 8.4e-14 81.6 99 43.4
TAR633G0137 Trochodendron aralioides HOM05D004659 ORTHO05D005547 1.7e-11 73.9 66 62.1
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 8.7e-11 71.6 48 68.8
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.0e-07 60.5 79 40.5
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.0e-07 60.5 79 40.5


User provided reference genes

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