Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.1e-150 536.6 269 100.0
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.0e-128 462.6 269 87.7
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.0e-127 460.3 269 85.5
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.7e-127 459.5 269 83.6
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.3e-126 454.1 269 83.3
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.2e-125 451.1 269 82.9
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 4.0e-124 448.4 269 82.2
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 1.5e-123 446.4 268 82.8
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 2.6e-123 445.7 269 82.9
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 3.7e-122 441.8 269 81.4
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 6.4e-122 441.0 269 81.4
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 8.3e-122 440.7 269 80.7
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.1e-121 440.3 264 82.6
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.1e-121 440.3 269 80.3
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.2e-121 438.7 269 81.4
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 4.1e-121 438.3 269 82.2
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 5.4e-121 438.0 270 81.1
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 7.1e-121 437.6 269 81.0
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 7.1e-121 437.6 269 80.3
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 9.2e-121 437.2 253 85.8
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.2e-120 436.8 266 79.7
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.6e-120 436.4 269 79.2
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 2.1e-120 436.0 269 79.9
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 7.8e-120 434.1 269 79.9
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 7.8e-120 434.1 266 79.7
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 1.0e-119 433.7 269 79.6
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 3.0e-119 432.2 269 80.3
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 6.6e-119 431.0 270 79.3
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 8.6e-119 430.6 266 78.9
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 8.6e-119 430.6 269 80.3
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 8.6e-119 430.6 261 80.8
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 1.5e-118 429.9 269 79.2
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.5e-118 429.1 266 78.6
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 4.3e-118 428.3 266 78.6
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 9.5e-118 427.2 252 84.5
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 2.8e-117 425.6 269 77.3
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 4.7e-117 424.9 266 77.8
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 4.7e-117 424.9 261 80.5
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 6.2e-117 424.5 269 78.1
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.1e-116 423.7 269 80.7
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.4e-116 423.3 269 79.2
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 2.3e-116 422.5 269 77.3
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 4.0e-116 421.8 265 79.2
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 4.0e-116 421.8 266 79.3
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.5e-115 419.9 270 80.0
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 1.5e-115 419.9 266 78.6
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 2.0e-115 419.5 269 78.1
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 2.6e-115 419.1 269 77.3
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 3.4e-115 418.7 277 77.6
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 4.4e-115 418.3 267 78.7
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 7.6e-115 417.5 263 78.7
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 7.6e-115 417.5 269 77.0
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.7e-114 416.4 269 76.2
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.7e-114 416.4 269 76.6
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 2.2e-114 416.0 263 78.3
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.2e-114 416.0 257 82.1
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 2.2e-114 416.0 269 76.2
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 2.9e-114 415.6 269 77.3
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 2.9e-114 415.6 263 80.2
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 3.8e-114 415.2 269 78.1
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 3.8e-114 415.2 269 77.0
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 6.4e-114 414.5 267 77.5
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.4e-113 413.3 280 76.8
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.4e-113 413.3 269 77.3
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.4e-113 413.3 269 76.2
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 1.4e-113 413.3 270 76.7
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 5.4e-113 411.4 268 77.2
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 7.1e-113 411.0 266 75.2
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.2e-112 410.2 269 76.2
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.6e-112 409.8 266 75.9
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 4.6e-112 408.3 276 75.0
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 6.0e-112 407.9 252 81.0
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 6.0e-112 407.9 269 77.3
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 7.8e-112 407.5 269 76.2
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.7e-111 406.4 269 76.2
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 2.3e-111 406.0 270 75.9
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.9e-111 405.2 269 77.0
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 6.6e-111 404.4 266 74.8
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 8.6e-111 404.1 269 76.6
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 1.1e-110 403.7 269 77.3
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 1.1e-110 403.7 263 76.4
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 3.3e-110 402.1 272 75.0
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 4.3e-110 401.7 269 77.0
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 5.6e-110 401.4 269 76.2
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 5.6e-110 401.4 266 74.1
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.6e-109 399.8 290 70.7
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.1e-109 399.4 257 78.6
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 6.2e-109 397.9 269 76.6
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 8.1e-109 397.5 267 74.9
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 8.1e-109 397.5 269 73.6
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 2.4e-108 396.0 269 72.1
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 5.2e-108 394.8 252 77.0
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 8.9e-108 394.0 293 70.6
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.2e-107 393.7 263 74.9
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 4.9e-106 388.3 261 75.1
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 6.4e-106 387.9 267 73.4
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 9.3e-105 384.0 305 66.2
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.6e-104 383.3 264 73.9
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.6e-104 383.3 265 74.0
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 2.1e-104 382.9 259 75.7
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 2.1e-104 382.9 259 75.7
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 2.1e-104 382.9 284 70.8
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.1e-104 382.9 266 72.2
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 2.7e-104 382.5 240 77.5
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 6.0e-104 381.3 256 73.4
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 5.1e-103 378.3 258 74.8
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 6.6e-103 377.9 252 75.4
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 1.5e-102 376.7 322 63.7
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 7.3e-102 374.4 268 71.6
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 1.1e-100 370.5 254 74.4
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 1.4e-100 370.2 259 72.6
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 2.6e-99 365.9 262 71.4
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 9.9e-99 364.0 259 72.2
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 2.2e-98 362.8 270 68.1
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 8.4e-98 360.9 264 68.9
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.4e-97 360.1 267 69.7
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.6e-96 356.7 264 68.6
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.6e-96 356.7 254 70.5
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 2.7e-96 355.9 277 67.9
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 3.5e-96 355.5 264 68.9
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 2.3e-95 352.8 264 68.2
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 3.9e-95 352.1 264 67.8
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 5.1e-95 351.7 264 67.4
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 8.7e-95 350.9 264 67.8
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.3e-94 349.0 229 78.2
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 4.3e-94 348.6 264 69.3
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 5.6e-94 348.2 264 67.4
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 9.6e-94 347.4 264 68.2
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 9.6e-94 347.4 264 68.2
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 1.6e-93 346.7 264 67.8
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 2.1e-93 346.3 264 67.8
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 2.1e-93 346.3 263 66.2
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 8.1e-93 344.4 261 70.1
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 4.0e-92 342.0 264 65.9
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 4.5e-91 338.6 283 65.0
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 9.9e-91 337.4 262 66.8
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.2e-90 336.3 263 66.9
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 2.4e-89 332.8 237 72.6
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 2.1e-85 319.7 201 80.6
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.8e-84 316.6 262 61.8
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.2e-83 313.9 203 76.8
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 7.6e-83 311.2 268 61.2
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.0e-82 310.8 264 60.6
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 4.9e-82 308.5 264 61.0
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 1.4e-81 307.0 268 60.4
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 3.9e-79 298.9 203 73.9
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 5.1e-79 298.5 243 66.3
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 8.7e-79 297.7 265 59.6
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 7.4e-78 294.7 264 58.3
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 6.7e-71 271.6 191 72.8
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.9e-68 261.5 144 86.8
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.8e-63 246.9 176 68.8
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 7.0e-44 181.8 212 47.6
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.3e-42 177.6 246 43.9
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 5.0e-42 175.6 123 74.0
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 5.5e-41 172.2 147 61.2
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 2.3e-39 166.8 206 44.2
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 4.5e-35 152.5 109 72.5
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 5.5e-33 145.6 93 77.4
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.7e-29 132.9 74 89.2
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.7e-27 126.7 76 82.9
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 7.8e-27 125.2 233 38.2
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 3.4e-22 109.8 185 40.5
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 5.9e-19 99.0 150 36.7
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 1.2e-16 91.3 127 45.7
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.0e-15 86.3 41 92.7
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.2e-14 84.7 86 47.7
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 1.3e-10 71.2 41 73.2
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 2.5e-09 67.0 138 36.2
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.3e-09 66.6 57 56.1
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 1.2e-08 64.7 43 60.5
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 5.2e-07 59.3 86 36.0


User provided reference genes

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