Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10603 Nelumbo nucifera HOM05D006865 ORTHO05D009005 1.4e-45 186.0 99 100.0
Nn3g18133 Nelumbo nucifera HOM05D006865 ORTHO05D009005 3.4e-28 128.3 92 76.1
Lj8A588T26 Lonicera japonica HOM05D006865 ORTHO05D009005 6.2e-22 107.5 97 58.8
Nn2g11491 Nelumbo nucifera HOM05D006865 ORTHO05D009005 6.2e-22 107.5 95 68.4
PSO210G4422 Papaver somniferum HOM05D006865 ORTHO05D009005 6.2e-22 107.5 89 65.2
PSO210G5031 Papaver somniferum HOM05D006865 ORTHO05D009005 6.2e-22 107.5 89 65.2
Dinv30268 Davidia involucrata HOM05D006865 ORTHO05D009005 1.1e-21 106.7 92 64.1
CSS0046438 Camellia sinensis var. sinensis HOM05D006865 ORTHO05D009005 8.9e-21 103.6 92 60.9
FvH4_2g35860 Fragaria vesca HOM05D006865 ORTHO05D009005 2.0e-20 102.4 89 62.9
FAN15G3339 Fragaria x ananassa HOM05D006865 ORTHO05D009005 4.4e-20 101.3 89 61.8
FAN27G2310 Fragaria x ananassa HOM05D006865 ORTHO05D009005 4.4e-20 101.3 89 62.9
Potri.006G240400 Populus trichocarpa HOM05D006865 ORTHO05D009005 5.8e-20 100.9 92 62.0
RcHm_v2.0_Chr6g0305961 Rosa chinensis HOM05D006865 ORTHO05D009005 5.8e-20 100.9 89 60.7
Sabra06G0188000 Salix brachista HOM05D006865 ORTHO05D009005 9.8e-20 100.1 92 60.9
QL12p029455 Quercus lobata HOM05D006865 ORTHO05D009005 3.7e-19 98.2 86 62.8
Haze_19694 Corylus avellana HOM05D006865 ORTHO05D009005 6.4e-19 97.4 97 55.7
Atru.chr7.2136 Acer truncatum HOM05D006865 ORTHO05D009005 8.3e-19 97.1 89 58.4
CiPaw.07G205700 Carya illinoinensis HOM05D006865 ORTHO05D009005 1.4e-18 96.3 89 60.7
Lsat_1_v5_gn_1_49660 Lactuca sativa HOM05D006865 ORTHO05D009005 1.4e-18 96.3 97 56.7
Cfa016677 Carpinus fangiana HOM05D006865 ORTHO05D009005 2.4e-18 95.5 97 55.7
MD15G1095700 Malus domestica HOM05D006865 ORTHO05D009005 2.4e-18 95.5 96 57.3
TWI63G0791 Tripterygium wilfordii HOM05D006865 ORTHO05D009005 2.4e-18 95.5 92 57.6
Prupe.1G450700 Prunus persica HOM05D006865 ORTHO05D009005 7.0e-18 94.0 89 58.4
Ciclev10008902m.g Citrus clementina HOM05D006865 ORTHO05D009005 1.6e-17 92.8 89 57.3
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 2.0e-17 92.4 93 55.9
Manes.16G071500 Manihot esculenta HOM05D006865 ORTHO05D009005 2.0e-17 92.4 86 62.8
Duzib187G1827 Durio zibethinus HOM05D006865 ORTHO05D009005 3.5e-17 91.7 80 61.2
Peaxi162Scf00276g00123 Petunia axillaris HOM05D006865 ORTHO05D009005 6.0e-17 90.9 96 52.1
HanXRQChr11g0351701 Helianthus annuus HOM05D006865 ORTHO05D009005 7.8e-17 90.5 97 54.6
ECA248G0081 Erigeron canadensis HOM05D006865 ORTHO05D009005 1.0e-16 90.1 97 54.6
DCAR_007711 Daucus carota HOM05D006865 ORTHO05D009005 1.7e-16 89.4 97 54.6
CsaV3_3G048620 Cucumis sativus L. HOM05D006865 ORTHO05D009005 3.0e-16 88.6 89 52.8
Nitab4.5_0000664g0200 Nicotiana tabacum HOM05D006865 ORTHO05D009005 3.0e-16 88.6 96 52.1
MELO3C003458.2 Cucumis melo HOM05D006865 ORTHO05D009005 3.9e-16 88.2 89 52.8
Solyc11g071240.2 Solanum lycopersicum HOM05D006865 ORTHO05D009005 3.9e-16 88.2 96 51.0
Sopen11g028930 Solanum pennellii HOM05D006865 ORTHO05D009005 3.9e-16 88.2 96 51.0
PGSC0003DMG400018564 Solanum tuberosum HOM05D006865 ORTHO05D009005 6.6e-16 87.4 96 50.0
ClCG11G015200 Citrullus lanatus HOM05D006865 ORTHO05D009005 8.6e-16 87.0 89 51.7
Nitab4.5_0001567g0190 Nicotiana tabacum HOM05D006865 ORTHO05D009005 1.1e-15 86.7 96 51.0
Sc23g0005180 Simmondsia chinensis HOM05D006865 ORTHO05D009005 1.5e-15 86.3 87 62.1
Oeu031553.1 Olea europaea HOM05D006865 ORTHO05D009005 1.9e-15 85.9 91 51.6
Glyma.04G081900 Glycine max HOM05D006865 ORTHO05D009005 3.3e-15 85.1 82 56.1
Glyma.06G083600 Glycine max HOM05D006865 ORTHO05D009005 3.3e-15 85.1 82 56.1
Sed0006345 Sechium edule HOM05D006865 ORTHO05D009005 5.6e-15 84.3 89 50.6
Medtr3g110138 Medicago truncatula HOM05D006865 ORTHO05D009005 7.3e-15 84.0 83 55.4
Ca_15607_v3 Cicer arietinum L. HOM05D006865 ORTHO05D009005 1.2e-14 83.2 82 56.1
PGR044G0390 Punica granatum HOM05D006865 ORTHO05D009005 1.2e-14 83.2 97 48.5
Phvul.009G107700 Phaseolus vulgaris HOM05D006865 ORTHO05D009005 1.6e-14 82.8 83 55.4
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 2.1e-14 82.4 89 52.8
CDE08G1680 Ceratophyllum demersum HOM05D006865 ORTHO05D009005 2.1e-14 82.4 89 52.8
TAR636G1122 Trochodendron aralioides HOM05D006865 ORTHO05D009005 3.6e-14 81.6 68 67.6
Lalb_Chr23g0269541 Lupinus albus HOM05D006865 ORTHO05D009005 4.7e-14 81.3 91 51.6
Psat5g022760 Pisum sativum HOM05D006865 ORTHO05D009005 4.7e-14 81.3 82 54.9
VMungo1309G1411 Vigna mungo HOM05D006865 ORTHO05D009005 4.7e-14 81.3 83 53.0
THA.LOC104814775 Tarenaya hassleriana HOM05D006865 ORTHO05D009005 1.1e-13 80.1 94 50.0
unitig_85.g27151 Utricularia gibba HOM05D006865 ORTHO05D009005 1.4e-13 79.7 87 48.3
Lj1g0027381 Lotus japonicus HOM05D006865 ORTHO05D009005 1.8e-13 79.3 81 54.3
EL10Ac2g04049 Beta vulgaris HOM05D006865 ORTHO05D009005 1.2e-12 76.6 83 50.6
C02p05200 Brassica napus HOM05D006865 ORTHO05D009005 1.2e-12 76.6 79 51.9
BolC2t06470H Brassica oleracea HOM05D006865 ORTHO05D009005 1.2e-12 76.6 79 51.9
CANSAT25G0847 Cannabis sativa HOM05D006865 ORTHO05D009005 1.5e-12 76.3 89 50.6
BcaC03g13374 Brassica carinata HOM05D006865 ORTHO05D009005 2.6e-12 75.5 79 50.6
AT5G11550 Arabidopsis thaliana HOM05D006865 ORTHO05D009005 3.4e-12 75.1 88 47.7
MSTRG.14022 Avicennia marina HOM05D006865 ORTHO05D009005 3.4e-12 75.1 95 48.4
Carub.0006s1002 Capsella rubella HOM05D006865 ORTHO05D009005 3.4e-12 75.1 88 47.7
Migut.E01518 Erythranthe guttata HOM05D006865 ORTHO05D009005 3.4e-12 75.1 89 47.2
BcaC04g19215 Brassica carinata HOM05D006865 ORTHO05D009005 5.8e-12 74.3 79 53.2
C09p65260 Brassica napus HOM05D006865 ORTHO05D009005 5.8e-12 74.3 79 53.2
AL6G22220 Arabidopsis lyrata HOM05D006865 ORTHO05D009005 7.5e-12 73.9 88 46.6
Hma1.2p1_1163F.1_g262770 Hydrangea macrophylla HOM05D006865 ORTHO05D009005 7.5e-12 73.9 82 51.2
BcaNung01933 Brassica carinata HOM05D006865 ORTHO05D009005 9.9e-12 73.6 79 50.6
Thhalv10014169m.g Eutrema salsugineum HOM05D006865 ORTHO05D009005 9.9e-12 73.6 79 51.9
Sp6g32050 Schrenkiella parvula HOM05D006865 ORTHO05D009005 9.9e-12 73.6 79 51.9
CARHR201670 Cardamine hirsuta HOM05D006865 ORTHO05D009005 1.3e-11 73.2 79 51.9
BcaB08g37044 Brassica carinata HOM05D006865 ORTHO05D009005 2.9e-11 72.0 79 51.9
A02p01060 Brassica napus HOM05D006865 ORTHO05D009005 2.9e-11 72.0 79 50.6
BraA02t05086Z Brassica rapa HOM05D006865 ORTHO05D009005 2.9e-11 72.0 79 50.6
Cc08_g09210 Coffea canephora HOM05D006865 ORTHO05D009005 3.7e-11 71.6 77 54.5
Aa31LG3G15650 Aethionema arabicum HOM05D006865 ORTHO05D009005 6.4e-11 70.9 75 53.3
A10p26220 Brassica napus HOM05D006865 ORTHO05D009005 8.3e-11 70.5 83 48.2
BraA10t44679Z Brassica rapa HOM05D006865 ORTHO05D009005 8.3e-11 70.5 83 48.2
BolC9t59354H Brassica oleracea HOM05D006865 ORTHO05D009005 1.4e-10 69.7 83 47.0
Thecc.09G042300 Theobroma cacao HOM05D006865 ORTHO05D009005 2.4e-10 68.9 62 61.3
TPR.G1329 Trifolium pratense HOM05D006865 ORTHO05D009005 2.4e-10 68.9 70 54.3
Pp3c13_7510 Physcomitrium patens HOM05D006865 ORTHO05D004758 3.2e-10 68.6 93 43.0
Nn5g30747 Nelumbo nucifera HOM05D006865 ORTHO05D009005 4.1e-10 68.2 54 72.2
Pp3c4_28800 Physcomitrium patens HOM05D006865 ORTHO05D009005 4.1e-10 68.2 93 43.0
SGA_v2.0_scaffold163G38079 Striga asiatica HOM05D006865 ORTHO05D009005 5.4e-10 67.8 89 44.9
Pp3c26_12730 Physcomitrium patens HOM05D006865 ORTHO05D009005 9.2e-10 67.0 93 41.9
BcaB01g05476 Brassica carinata HOM05D006865 ORTHO05D009005 1.6e-09 66.2 76 48.7
Nn1g00141 Nelumbo nucifera HOM05D006865 ORTHO05D009005 6.0e-09 64.3 46 67.4
Medtr3g110088 Medicago truncatula HOM05D006865 ORTHO05D009005 7.8e-09 63.9 83 47.0
SMO174G0141 Selaginella moellendorffii HOM05D006865 ORTHO05D004758 1.7e-08 62.8 75 45.3
Nn6g34726 Nelumbo nucifera HOM05D006865 ORTHO05D009005 5.1e-08 61.2 69 55.1
ATR0584G241 Amborella trichopoda HOM05D000271 ORTHO05D004758 1.1e-07 60.1 77 42.9
Peaxi162Scf00016g00202 Petunia axillaris HOM05D000271 ORTHO05D004758 1.9e-07 59.3 92 38.0
Sc08g0001720 Simmondsia chinensis HOM05D000271 ORTHO05D004758 1.9e-07 59.3 75 44.0
SGA_v2.0_scaffold393G50695 Striga asiatica HOM05D000271 ORTHO05D004758 2.5e-07 58.9 92 40.2
AUR62009307 Chenopodium quinoa HOM05D006865 ORTHO05D009005 3.3e-07 58.5 68 50.0
Oeu044305.1 Olea europaea HOM05D000271 ORTHO05D004758 4.3e-07 58.2 92 37.0
HanXRQChr10g0301971 Helianthus annuus HOM05D000271 ORTHO05D004758 7.3e-07 57.4 92 37.0
Lsat_1_v5_gn_0_4301 Lactuca sativa HOM05D000271 ORTHO05D004758 7.3e-07 57.4 92 35.9
Nn1g04802 Nelumbo nucifera HOM05D000271 ORTHO05D004758 7.3e-07 57.4 93 35.5
CAN.G1041.43 Capsicum annuum HOM05D000271 ORTHO05D004758 9.5e-07 57.0 92 37.0
Solyc01g107980.3 Solanum lycopersicum HOM05D000271 ORTHO05D004758 9.5e-07 57.0 92 37.0
Sopen01g050180 Solanum pennellii HOM05D000271 ORTHO05D004758 9.5e-07 57.0 92 37.0
unitig_60.g25455 Utricularia gibba HOM05D000271 ORTHO05D004758 9.5e-07 57.0 92 37.0
MSTRG.20165 Avicennia marina HOM05D000271 ORTHO05D004758 1.2e-06 56.6 92 37.0
PGSC0003DMG400025884 Solanum tuberosum HOM05D000271 ORTHO05D004758 1.2e-06 56.6 92 37.0
Peaxi162Scf00152g00012 Petunia axillaris HOM05D000271 ORTHO05D004758 1.6e-06 56.2 92 37.0
Ciclev10028522m.g Citrus clementina HOM05D000271 ORTHO05D004758 2.1e-06 55.8 95 37.9
DCAR_022015 Daucus carota HOM05D000271 ORTHO05D004758 2.1e-06 55.8 92 35.9
Lalb_Chr05g0219271 Lupinus albus HOM05D000271 ORTHO05D004758 2.1e-06 55.8 89 40.4
SEGI_21396 Sequoiadendron giganteum HOM05D000271 ORTHO05D004758 2.1e-06 55.8 77 41.6
Ah.01g017840 Amaranthus hybridus HOM05D000271 ORTHO05D004758 2.8e-06 55.5 75 40.0
HanXRQChr04g0128151 Helianthus annuus HOM05D000271 ORTHO05D004758 2.8e-06 55.5 76 39.5
Hma1.2p1_0370F.1_g137660 Hydrangea macrophylla HOM05D000271 ORTHO05D004758 2.8e-06 55.5 75 40.0
MBI09_g11543_MAGBIO Magnolia biondii HOM05D000271 ORTHO05D004758 2.8e-06 55.5 75 40.0
Nitab4.5_0003080g0010 Nicotiana tabacum HOM05D000271 ORTHO05D004758 2.8e-06 55.5 92 35.9
TAR628G1278 Trochodendron aralioides HOM05D000271 ORTHO05D004758 2.8e-06 55.5 94 34.0
Atru.chr5.2665 Acer truncatum HOM05D000271 ORTHO05D004758 3.6e-06 55.1 95 36.8
SEGI_20265 Sequoiadendron giganteum HOM05D006865 ORTHO05D004758 3.6e-06 55.1 79 48.1
AUR62010239 Chenopodium quinoa HOM05D000271 ORTHO05D004758 4.7e-06 54.7 75 41.3
AUR62013222 Chenopodium quinoa HOM05D000271 ORTHO05D004758 4.7e-06 54.7 75 41.3
ECA236G3599 Erigeron canadensis HOM05D000271 ORTHO05D004758 4.7e-06 54.7 75 38.7
EL10Ac9g21579 Beta vulgaris HOM05D000271 ORTHO05D004758 6.2e-06 54.3 75 38.7
Duzib132G0157 Durio zibethinus HOM05D000271 ORTHO05D004758 6.2e-06 54.3 95 35.8
ECA234G4675 Erigeron canadensis HOM05D000271 ORTHO05D004758 6.2e-06 54.3 92 33.7
Hma1.2p1_0474F.1_g160530 Hydrangea macrophylla HOM05D000271 ORTHO05D004758 6.2e-06 54.3 93 34.4
Nn5g30343 Nelumbo nucifera HOM05D000271 ORTHO05D004758 6.2e-06 54.3 75 40.0
Nitab4.5_0001428g0070 Nicotiana tabacum HOM05D000271 ORTHO05D004758 6.2e-06 54.3 92 34.8
unitig_744.g24228 Utricularia gibba HOM05D000271 ORTHO05D004758 6.2e-06 54.3 92 35.9
CSS0008597 Camellia sinensis var. sinensis HOM05D000271 ORTHO05D004758 8.1e-06 53.9 93 35.5
CDE08G0542 Ceratophyllum demersum HOM05D000271 ORTHO05D004758 8.1e-06 53.9 77 42.9
Dinv15729 Davidia involucrata HOM05D000271 ORTHO05D004758 8.1e-06 53.9 92 34.8
Psat7g125600 Pisum sativum HOM05D000271 ORTHO05D004758 8.1e-06 53.9 75 42.7
Rhsim11G0164700 Rhododendron simsii HOM05D000271 ORTHO05D004758 8.1e-06 53.9 92 35.9
TPR.G31591 Trifolium pratense HOM05D000271 ORTHO05D004758 8.1e-06 53.9 89 39.3


User provided reference genes

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