Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 2.0e-130 469.2 244 100.0
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 8.3e-36 154.8 188 56.4
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 1.1e-27 127.9 180 49.4
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.4e-27 127.5 190 46.8
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 6.6e-25 118.6 194 45.4
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 1.1e-24 117.9 191 41.4
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.1e-22 111.3 110 55.5
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 2.3e-22 110.2 242 36.8
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.3e-22 110.2 116 56.0
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 2.3e-22 110.2 125 53.6
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 8.9e-22 108.2 185 42.2
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.4e-21 106.3 119 52.9
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 3.4e-21 106.3 119 52.1
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 4.4e-21 105.9 120 53.3
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 5.8e-21 105.5 119 52.1
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 9.8e-21 104.8 143 49.0
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.7e-20 102.8 132 50.0
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 6.4e-20 102.1 185 40.5
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 6.4e-20 102.1 240 34.6
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 6.4e-20 102.1 217 37.8
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 1.4e-19 100.9 103 55.3
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 1.9e-19 100.5 201 39.8
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 1.9e-19 100.5 244 34.8
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 3.2e-19 99.8 105 51.4
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 4.1e-19 99.4 93 55.9
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 5.4e-19 99.0 214 40.2
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 5.4e-19 99.0 148 46.6
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 5.4e-19 99.0 120 52.5
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 7.0e-19 98.6 104 56.7
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 1.2e-18 97.8 109 54.1
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.6e-18 97.4 157 40.8
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 1.6e-18 97.4 122 47.5
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 2.1e-18 97.1 86 61.6
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.7e-18 96.7 101 57.4
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 2.7e-18 96.7 101 57.4
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 6.0e-18 95.5 88 56.8
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 6.0e-18 95.5 95 58.9
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 6.0e-18 95.5 119 49.6
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 7.8e-18 95.1 103 57.3
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 7.8e-18 95.1 127 51.2
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 7.8e-18 95.1 120 51.7
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 7.8e-18 95.1 95 53.7
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 1.0e-17 94.7 97 54.6
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.3e-17 94.4 101 56.4
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 1.3e-17 94.4 113 51.3
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 1.3e-17 94.4 103 50.5
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.7e-17 94.0 180 38.9
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 1.7e-17 94.0 131 43.5
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 2.3e-17 93.6 149 45.0
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 2.3e-17 93.6 94 54.3
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 2.3e-17 93.6 186 40.3
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 3.9e-17 92.8 126 47.6
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 3.9e-17 92.8 118 50.0
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.9e-17 92.8 107 54.2
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 6.6e-17 92.0 151 42.4
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 1.1e-16 91.3 205 36.1
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.5e-16 90.9 86 59.3
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.5e-16 90.9 74 66.2
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.5e-16 90.9 81 58.0
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 1.9e-16 90.5 104 53.8
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.9e-16 90.5 100 56.0
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 2.5e-16 90.1 184 36.4
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 3.3e-16 89.7 206 37.4
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 3.3e-16 89.7 81 56.8
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 4.3e-16 89.4 93 53.8
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 4.3e-16 89.4 81 56.8
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 7.3e-16 88.6 96 59.4
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 9.5e-16 88.2 189 37.0
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 1.6e-15 87.4 144 41.7
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 2.1e-15 87.0 174 42.5
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 3.6e-15 86.3 97 51.5
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 8.1e-15 85.1 107 50.5
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 8.1e-15 85.1 90 53.3
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 1.1e-14 84.7 112 49.1
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 1.4e-14 84.3 140 45.0
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 1.8e-14 84.0 89 57.3
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 3.1e-14 83.2 109 49.5
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 4.0e-14 82.8 140 45.0
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 5.2e-14 82.4 95 55.8
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 5.2e-14 82.4 148 42.6
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 6.8e-14 82.0 92 53.3
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 6.8e-14 82.0 100 53.0
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 8.9e-14 81.6 151 37.1
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 8.9e-14 81.6 114 40.4
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 8.9e-14 81.6 170 37.6
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 1.2e-13 81.3 184 34.8
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 2.0e-13 80.5 95 52.6
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 2.0e-13 80.5 185 38.4
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 2.6e-13 80.1 137 42.3
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 3.4e-13 79.7 137 43.8
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 7.5e-13 78.6 175 34.3
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 1.3e-12 77.8 198 37.4
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 1.7e-12 77.4 153 41.2
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 3.7e-12 76.3 146 39.7
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 3.7e-12 76.3 89 55.1
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.7e-12 76.3 203 35.5
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 4.9e-12 75.9 85 50.6
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 4.9e-12 75.9 128 43.8
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 4.9e-12 75.9 85 50.6
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 4.9e-12 75.9 128 43.8
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 4.9e-12 75.9 183 38.8
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 8.3e-12 75.1 193 34.2
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 1.1e-11 74.7 65 61.5
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 1.1e-11 74.7 92 53.3
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 1.4e-11 74.3 117 45.3
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 1.4e-11 74.3 130 40.0
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 1.4e-11 74.3 93 51.6
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 1.4e-11 74.3 99 47.5
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.9e-11 73.9 122 46.7
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 2.4e-11 73.6 136 40.4
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 2.4e-11 73.6 128 43.0
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 4.1e-11 72.8 158 39.2
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 5.4e-11 72.4 166 37.3
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 7.1e-11 72.0 63 60.3
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 1.2e-10 71.2 106 45.3
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 1.2e-10 71.2 153 38.6
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 1.2e-10 71.2 64 59.4
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 2.7e-10 70.1 205 35.1
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 2.7e-10 70.1 71 56.3
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 3.5e-10 69.7 56 60.7
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 6.0e-10 68.9 81 54.3
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 6.0e-10 68.9 104 40.4
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 1.0e-09 68.2 81 53.1
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 2.3e-09 67.0 141 38.3
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 3.0e-09 66.6 167 35.9
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 1.5e-08 64.3 53 58.5
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 1.9e-08 63.9 149 38.9
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 3.6e-07 59.7 72 44.4
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 4.7e-07 59.3 93 40.9
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 1.4e-06 57.8 65 44.6
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.8e-06 57.4 153 35.3
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 6.8e-06 55.5 142 33.8


User provided reference genes

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