Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.1e-89 333.2 165 100.0
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 7.3e-68 260.8 170 81.8
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 8.3e-56 220.7 164 65.9
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 6.4e-48 194.5 153 60.8
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 2.4e-47 192.6 158 57.6
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 1.6e-46 189.9 159 57.9
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 3.0e-45 185.7 153 58.2
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 1.5e-44 183.3 161 54.7
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 4.3e-44 181.8 157 57.3
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 7.3e-44 181.0 152 56.6
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 9.5e-44 180.6 158 55.1
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 6.8e-42 174.5 162 55.6
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.2e-41 173.7 152 54.6
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 1.5e-41 173.3 147 59.9
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 1.5e-41 173.3 161 54.7
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 2.0e-41 172.9 170 51.2
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 2.0e-41 172.9 158 50.6
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 2.6e-41 172.6 158 52.5
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 7.6e-41 171.0 161 55.3
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 9.9e-41 170.6 154 54.5
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 1.7e-40 169.9 167 53.3
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 1.7e-40 169.9 173 48.0
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 3.8e-40 168.7 158 50.0
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 6.4e-40 167.9 153 52.9
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.4e-39 166.8 152 56.6
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.9e-39 166.4 152 56.6
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 3.2e-39 165.6 151 56.3
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 9.2e-39 164.1 165 53.9
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 2.7e-38 162.5 154 53.2
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 3.5e-38 162.2 140 55.7
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 4.6e-38 161.8 143 55.2
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 6.0e-38 161.4 146 55.5
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 6.0e-38 161.4 172 47.1
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 6.0e-38 161.4 145 55.2
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 6.0e-38 161.4 162 51.2
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 7.8e-38 161.0 162 50.6
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 1.0e-37 160.6 139 54.7
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 1.3e-37 160.2 164 48.2
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 2.3e-37 159.5 162 50.0
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 5.1e-37 158.3 154 51.9
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 5.1e-37 158.3 145 53.8
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 8.6e-37 157.5 147 53.1
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 8.6e-37 157.5 145 53.8
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 1.1e-36 157.1 160 50.6
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 1.5e-36 156.8 145 53.1
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.5e-36 156.8 145 53.1
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 2.5e-36 156.0 149 52.3
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 3.3e-36 155.6 162 48.8
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 4.3e-36 155.2 162 48.8
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 1.6e-35 153.3 184 46.7
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 3.6e-35 152.1 164 45.7
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 4.7e-35 151.8 152 47.4
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 6.2e-35 151.4 150 51.3
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 6.2e-35 151.4 138 56.5
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 6.2e-35 151.4 138 56.5
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 1.1e-34 150.6 138 55.1
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 1.8e-34 149.8 153 49.7
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.4e-34 149.4 130 56.9
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 2.4e-34 149.4 138 56.5
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 4.0e-34 148.7 159 47.8
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 5.2e-34 148.3 130 51.5
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 6.9e-34 147.9 148 52.7
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 6.9e-34 147.9 121 58.7
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 6.9e-34 147.9 142 52.1
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 8.9e-34 147.5 138 53.6
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.0e-33 146.4 131 53.4
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.0e-33 146.4 138 53.6
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 2.0e-33 146.4 134 57.5
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 3.4e-33 145.6 156 46.2
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 3.4e-33 145.6 161 50.9
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 4.4e-33 145.2 129 55.0
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 5.8e-33 144.8 145 48.3
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 9.9e-33 144.1 153 48.4
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 2.9e-32 142.5 125 56.0
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 6.4e-32 141.4 145 48.3
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 6.4e-32 141.4 151 48.3
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 1.9e-31 139.8 144 51.4
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 2.4e-31 139.4 125 56.8
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 4.2e-31 138.7 132 55.3
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 5.4e-31 138.3 157 45.9
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 1.6e-30 136.7 117 59.8
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 1.6e-30 136.7 140 47.9
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.6e-30 136.7 131 48.9
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 2.7e-30 136.0 152 44.7
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 4.6e-30 135.2 158 41.8
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 1.3e-29 133.7 131 51.1
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.9e-29 132.1 138 52.9
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 5.1e-29 131.7 131 50.4
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 5.1e-29 131.7 132 48.5
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 5.1e-29 131.7 179 42.5
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 4.3e-28 128.6 110 57.3
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 5.6e-28 128.3 155 47.7
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 7.3e-28 127.9 130 50.8
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 9.6e-28 127.5 114 55.3
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 9.6e-28 127.5 110 57.3
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 1.3e-27 127.1 114 57.0
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 1.3e-27 127.1 114 57.0
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 8.1e-27 124.4 142 44.4
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 1.5e-25 120.2 113 51.3
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 9.3e-23 110.9 148 40.5
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.2e-22 110.5 121 44.6
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 3.5e-22 109.0 113 46.0
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 2.5e-20 102.8 145 40.0
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 3.3e-20 102.4 148 37.2
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 3.6e-19 99.0 67 65.7
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 2.0e-17 93.2 102 50.0
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 2.6e-17 92.8 92 51.1
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 8.7e-13 77.8 104 36.5
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 1.8e-10 70.1 104 39.4
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 3.4e-09 65.9 52 57.7
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 5.8e-09 65.1 121 35.5
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 1.7e-08 63.5 83 37.3
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 8.4e-08 61.2 58 51.7
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 1.9e-07 60.1 100 35.0
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 7.1e-07 58.2 128 33.6
Pp3c17_18030 Physcomitrium patens HOM05D016889 ORTHO05D026570 3.5e-06 55.8 123 33.3


User provided reference genes

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