Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 2262.6 1165 100.0
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 2024.6 1168 89.0
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1996.5 1093 92.2
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1986.8 1170 86.8
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1963.0 1163 87.3
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1951.0 1163 85.9
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1942.9 1174 85.6
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1940.2 1169 84.9
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1939.9 1176 85.5
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1939.1 1163 85.6
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1926.8 1168 84.8
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1926.4 1169 84.7
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1925.6 1170 85.0
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1923.3 1169 85.3
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1915.6 1163 83.8
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1915.2 1170 84.7
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1912.9 1164 84.5
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1911.7 1165 84.5
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1911.3 1163 82.7
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1908.6 1171 84.8
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1906.0 1163 84.4
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1904.8 1163 83.8
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1903.6 1163 84.9
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1902.5 1168 84.5
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1902.1 1163 84.4
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1899.4 1163 83.6
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1899.0 1163 82.7
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1897.9 1163 83.3
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1895.2 1171 83.9
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1892.1 1163 84.4
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1890.9 1163 83.4
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1890.5 1163 84.4
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1889.8 1163 81.8
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1889.4 1163 84.1
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1881.3 1164 84.7
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1881.3 1163 82.1
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1880.9 1163 83.7
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1880.9 1163 82.6
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1880.9 1163 82.6
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1880.1 1167 83.5
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1877.1 1166 83.4
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1875.9 1165 82.9
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1874.4 1163 82.5
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1874.0 1163 83.2
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1872.8 1163 83.4
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1872.8 1201 81.1
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1872.4 1202 81.8
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1871.3 1168 83.0
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1870.5 1168 83.0
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1869.0 1174 81.8
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1869.0 1168 83.0
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1869.0 1165 83.1
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1868.6 1166 82.1
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1868.6 1166 82.2
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1868.6 1166 82.2
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1866.3 1163 82.8
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1866.3 1159 83.8
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1865.5 1170 82.0
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1864.7 1167 81.5
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1861.3 1172 82.3
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1859.7 1166 81.8
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1859.7 1167 82.3
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1859.3 1165 83.0
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1857.8 1165 81.9
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1857.4 1169 82.0
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1854.7 1171 82.1
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1854.0 1209 78.9
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1852.4 1169 82.0
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1850.9 1172 81.9
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1850.1 1175 81.6
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1848.9 1165 82.0
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1848.2 1209 79.8
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1847.0 1171 81.8
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1847.0 1171 81.8
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1845.5 1176 81.4
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1845.1 1163 81.5
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1843.2 1165 81.8
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1840.5 1164 80.8
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1838.9 1172 81.1
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1837.8 1165 81.3
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1836.2 1185 80.3
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1827.0 1167 81.4
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1823.5 1163 78.5
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1813.9 1103 82.2
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1808.5 1168 80.7
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1800.8 1173 80.4
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1798.5 1103 81.1
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1756.1 1163 76.1
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1756.1 1329 71.4
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1752.3 1178 76.7
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1744.2 1190 78.1
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1739.9 1164 77.0
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1726.1 1160 75.9
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1725.7 1166 74.4
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1697.6 1067 79.9
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1603.6 991 81.8
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1595.9 1163 69.8
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1591.6 1163 68.9
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1569.3 1155 74.5
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1521.1 939 83.2
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1466.8 1165 63.4
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1465.3 1160 64.3
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1437.6 849 85.6
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1429.5 1160 62.3
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1408.3 1166 61.5
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1400.6 799 87.6
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1392.5 1182 61.2
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1378.2 840 82.5
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1313.1 798 81.8
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1186.8 784 76.4
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1117.8 920 60.8
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1100.5 697 81.1
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 0.0e+00 1078.5 1193 47.1
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 2.8e-299 1032.3 654 80.6
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 6.1e-286 988.0 578 88.4
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 3.9e-277 958.7 741 67.9
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 3.7e-275 952.2 598 81.6
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.1e-271 940.6 587 81.3
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 8.8e-269 931.0 549 87.4
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 2.5e-255 886.3 628 71.5
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 6.8e-245 851.7 520 78.7
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 2.5e-215 753.4 465 78.7
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 4.3e-207 726.1 477 79.0
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 7.6e-204 715.3 409 86.3
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.6e-151 540.8 348 83.0
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 2.7e-145 520.8 359 76.0
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 2.5e-114 417.9 379 55.9
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 1.2e-105 389.0 274 72.6
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 2.2e-86 325.1 194 80.9
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 3.3e-58 231.5 168 75.0
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.3e-46 193.0 174 63.2
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 4.7e-44 184.5 145 71.7
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 2.5e-37 162.2 87 87.4
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 2.7e-36 158.7 102 81.4
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 6.1e-36 157.5 108 77.8
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 4.4e-34 151.4 78 91.0
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 2.2e-33 149.1 96 81.2
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 1.3e-22 113.2 83 72.3
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 2.0e-18 99.4 81 60.5
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 2.6e-18 99.0 109 47.7
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 7.0e-16 90.9 50 80.0
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 2.0e-15 89.4 50 80.0
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.7e-15 89.0 50 80.0
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 1.9e-13 82.8 100 73.0
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.7e-07 62.4 37 73.0
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 7.8e-07 60.8 344 23.5


User provided reference genes

Program Settings