Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10533 Nelumbo nucifera HOM05D003583 ORTHO05D004169 5.6e-110 401.0 206 100.0
Nn6g33306 Nelumbo nucifera HOM05D003583 ORTHO05D004169 8.5e-50 201.1 131 76.3
Nn5g29939 Nelumbo nucifera HOM05D003583 ORTHO05D271153 1.0e-42 177.6 153 69.3
TAR633G0566 Trochodendron aralioides HOM05D003583 ORTHO05D004169 1.2e-24 117.5 186 45.2
TAR362G1106 Trochodendron aralioides HOM05D003583 ORTHO05D004169 3.4e-22 109.4 181 45.9
Dinv19172 Davidia involucrata HOM05D003583 ORTHO05D004169 4.4e-22 109.0 195 41.0
GSVIVG01003252001 Vitis vinifera HOM05D003583 ORTHO05D004169 1.3e-21 107.5 152 46.1
CDE06G0189 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 4.1e-20 102.4 170 40.6
vmacro02783 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 4.6e-19 99.0 189 38.6
Nn7g37781 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.0e-18 97.8 86 60.5
Nn3g20050 Nelumbo nucifera HOM05D002516 ORTHO05D002703 3.0e-18 96.3 74 62.2
TWI36G1542 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 5.0e-18 95.5 144 42.4
Actinidia39429 Actinidia chinensis HOM05D003583 ORTHO05D004169 1.1e-17 94.4 159 40.3
Dinv12649 Davidia involucrata HOM05D003583 ORTHO05D004169 1.1e-17 94.4 124 46.8
Lj1g0010920 Lotus japonicus HOM05D003583 ORTHO05D004169 1.9e-17 93.6 217 36.9
Lalb_Chr03g0041471 Lupinus albus HOM05D003583 ORTHO05D004169 1.9e-17 93.6 150 42.7
Nn1g07991 Nelumbo nucifera HOM05D003583 ORTHO05D004169 1.9e-17 93.6 74 60.8
CSS0028584 Camellia sinensis var. sinensis HOM05D003583 ORTHO05D004169 4.3e-17 92.4 153 40.5
Gohir.D08G212800 Gossypium hirsutum HOM05D003583 ORTHO05D004169 4.3e-17 92.4 166 38.0
Hund05577 Selenicereus undatus HOM05D003583 ORTHO05D004169 4.3e-17 92.4 120 43.3
unitig_0.g373 Utricularia gibba HOM05D003583 ORTHO05D004169 5.6e-17 92.0 159 40.9
COL.COLO4_15618 Corchorus olitorius HOM05D003583 ORTHO05D004169 7.3e-17 91.7 152 40.1
TWI75G1818 Tripterygium wilfordii HOM05D003583 ORTHO05D004169 9.5e-17 91.3 141 43.3
Manes.12G047400 Manihot esculenta HOM05D003583 ORTHO05D004169 1.6e-16 90.5 154 39.6
ClCG07G002090 Citrullus lanatus HOM05D003583 ORTHO05D004169 2.1e-16 90.1 149 40.9
MBI11_g07418_MAGBIO Magnolia biondii HOM05D003583 ORTHO05D004169 2.1e-16 90.1 74 56.8
Cfa004159 Carpinus fangiana HOM05D003583 ORTHO05D004169 3.6e-16 89.4 169 37.3
Ciclev10021065m.g Citrus clementina HOM05D003583 ORTHO05D004169 4.7e-16 89.0 154 40.3
CsaV3_3G030030 Cucumis sativus L. HOM05D003583 ORTHO05D004169 6.2e-16 88.6 149 40.3
Hma1.2p1_0226F.1_g095390 Hydrangea macrophylla HOM05D003583 ORTHO05D004169 6.2e-16 88.6 128 45.3
arahy.Tifrunner.gnm1.ann1.6L1LF5 Arachis hypogaea HOM05D003583 ORTHO05D004169 8.0e-16 88.2 171 38.0
arahy.Tifrunner.gnm1.ann1.SP3ESK Arachis hypogaea HOM05D003583 ORTHO05D004169 8.0e-16 88.2 171 38.0
MELO3C022717.2 Cucumis melo HOM05D003583 ORTHO05D004169 8.0e-16 88.2 149 40.3
Lsat_1_v5_gn_5_180820 Lactuca sativa HOM05D003583 ORTHO05D004169 8.0e-16 88.2 185 34.6
Thecc.01G220200 Theobroma cacao HOM05D003583 ORTHO05D004169 8.0e-16 88.2 151 40.4
Cc01_g16710 Coffea canephora HOM05D003583 ORTHO05D004169 1.1e-15 87.8 179 35.2
Glyma.08G348400 Glycine max HOM05D003583 ORTHO05D004169 1.1e-15 87.8 148 39.9
Glyma.18G160200 Glycine max HOM05D003583 ORTHO05D004169 1.1e-15 87.8 148 39.9
Lalb_Chr19g0125831 Lupinus albus HOM05D003583 ORTHO05D004169 1.1e-15 87.8 122 45.1
VMungo1383G2149 Vigna mungo HOM05D003583 ORTHO05D004169 1.4e-15 87.4 183 37.2
CiPaw.02G023700 Carya illinoinensis HOM05D003583 ORTHO05D004169 1.8e-15 87.0 176 35.8
Sed0008761 Sechium edule HOM05D003583 ORTHO05D004169 1.8e-15 87.0 148 39.9
Gohir.D07G205500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 4.0e-15 85.9 152 40.1
Gorai.001G231500 Gossypium raimondii HOM05D003583 ORTHO05D004169 4.0e-15 85.9 152 40.1
HPP92_003545 Vanilla planifolia HOM05D003583 ORTHO05D004169 5.2e-15 85.5 74 55.4
Migut.N00631 Erythranthe guttata HOM05D003583 ORTHO05D004169 6.8e-15 85.1 161 36.6
Potri.002G245900 Populus trichocarpa HOM05D003583 ORTHO05D004169 6.8e-15 85.1 147 38.1
Zm00001eb036350 Zea mays HOM05D003583 ORTHO05D004169 6.8e-15 85.1 184 36.4
Aqoxy5G00027 Aquilegia oxysepala HOM05D003583 ORTHO05D004169 8.9e-15 84.7 115 42.6
PSO017G0014 Papaver somniferum HOM05D003583 ORTHO05D004169 8.9e-15 84.7 160 36.9
Rhsim13G0047800 Rhododendron simsii HOM05D003583 ORTHO05D004169 8.9e-15 84.7 204 35.3
Peaxi162Scf00068g02311 Petunia axillaris HOM05D003583 ORTHO05D004169 1.2e-14 84.3 176 37.5
DCAR_018637 Daucus carota HOM05D003583 ORTHO05D004169 1.5e-14 84.0 138 39.9
Gohir.A07G199000 Gossypium hirsutum HOM05D003583 ORTHO05D004169 1.5e-14 84.0 152 39.5
Duzib211G0612 Durio zibethinus HOM05D003583 ORTHO05D004169 2.6e-14 83.2 151 37.1
PSO063G4910 Papaver somniferum HOM05D003583 ORTHO05D004169 2.6e-14 83.2 157 36.3
CANSAT01G0519 Cannabis sativa HOM05D003583 ORTHO05D004169 3.4e-14 82.8 120 40.8
AL3G18500 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 4.4e-14 82.4 141 37.6
Carub.0003s0675 Capsella rubella HOM05D003583 ORTHO05D004169 4.4e-14 82.4 159 35.8
Phvul.008G131301 Phaseolus vulgaris HOM05D003583 ORTHO05D004169 5.8e-14 82.0 184 34.8
AT3G07220 Arabidopsis thaliana HOM05D003583 ORTHO05D004169 7.5e-14 81.6 142 37.3
Manes.13G049400 Manihot esculenta HOM05D003583 ORTHO05D004169 7.5e-14 81.6 120 41.7
THA.LOC104822491 Tarenaya hassleriana HOM05D003583 ORTHO05D004169 7.5e-14 81.6 150 37.3
Aa31LG5G17810 Aethionema arabicum HOM05D003583 ORTHO05D004169 9.8e-14 81.3 131 34.4
Sopen09g022660 Solanum pennellii HOM05D003583 ORTHO05D004169 9.8e-14 81.3 220 33.2
ATR0561G144 Amborella trichopoda HOM05D003583 ORTHO05D004169 1.3e-13 80.9 151 37.7
CDE06G1446 Ceratophyllum demersum HOM05D003583 ORTHO05D004169 1.3e-13 80.9 72 55.6
SalBow3G2553 Salvia bowleyana HOM05D003583 ORTHO05D004169 1.3e-13 80.9 196 35.2
Thhalv10021140m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 1.7e-13 80.5 113 40.7
HanXRQChr04g0108021 Helianthus annuus HOM05D003583 ORTHO05D004169 1.7e-13 80.5 149 38.9
CARHR081870 Cardamine hirsuta HOM05D003583 ORTHO05D004169 2.2e-13 80.1 147 36.1
Carub.0003s0679 Capsella rubella HOM05D003583 ORTHO05D004169 2.9e-13 79.7 111 40.5
CAN.G1418.4 Capsicum annuum HOM05D003583 ORTHO05D004169 3.7e-13 79.3 155 38.1
EL10Ac7g17902 Beta vulgaris HOM05D003583 ORTHO05D004169 4.9e-13 79.0 74 51.4
Prupe.8G198900 Prunus persica HOM05D003583 ORTHO05D004169 4.9e-13 79.0 120 40.8
Actinidia30051 Actinidia chinensis HOM05D003583 ORTHO05D004169 6.4e-13 78.6 237 35.0
Duzib138G0093 Durio zibethinus HOM05D003583 ORTHO05D004169 8.3e-13 78.2 152 38.2
MD10G1159800 Malus domestica HOM05D003583 ORTHO05D004169 8.3e-13 78.2 149 38.9
HanXRQChr01g0015291 Helianthus annuus HOM05D003583 ORTHO05D004169 1.9e-12 77.0 191 35.6
MD05G1171600 Malus domestica HOM05D003583 ORTHO05D004169 1.9e-12 77.0 94 46.8
Nitab4.5_0013864g0010 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.9e-12 77.0 74 50.0
RcHm_v2.0_Chr6g0284101 Rosa chinensis HOM05D003583 ORTHO05D004169 2.4e-12 76.6 91 48.4
MSTRG.17995 Avicennia marina HOM05D003583 ORTHO05D004169 3.2e-12 76.3 125 38.4
FvH4_2g18540 Fragaria vesca HOM05D003583 ORTHO05D004169 3.2e-12 76.3 94 46.8
FAN24G2032 Fragaria x ananassa HOM05D003583 ORTHO05D004169 3.2e-12 76.3 94 46.8
Lj1A89T66 Lonicera japonica HOM05D003583 ORTHO05D004169 3.2e-12 76.3 134 35.8
Oeu030584.1 Olea europaea HOM05D003583 ORTHO05D004169 3.2e-12 76.3 144 36.8
AUR62001132 Chenopodium quinoa HOM05D003583 ORTHO05D004169 4.1e-12 75.9 132 39.4
Eucgr.K02138 Eucalyptus grandis HOM05D003583 ORTHO05D004169 4.1e-12 75.9 168 32.7
AUR62016547 Chenopodium quinoa HOM05D003583 ORTHO05D004169 5.4e-12 75.5 74 50.0
Os08g0528900 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 5.4e-12 75.5 185 34.6
SEGI_31201 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 5.4e-12 75.5 82 50.0
Nitab4.5_0001161g0140 Nicotiana tabacum HOM05D003583 ORTHO05D004169 9.2e-12 74.7 221 33.9
Sabra02G0187200 Salix brachista HOM05D003583 ORTHO05D004169 9.2e-12 74.7 74 48.6
PGSC0003DMG400020100 Solanum tuberosum HOM05D003583 ORTHO05D004169 9.2e-12 74.7 222 33.3
ECA236G5107 Erigeron canadensis HOM05D003583 ORTHO05D004169 1.2e-11 74.3 107 42.1
Sp3g06180 Schrenkiella parvula HOM05D003583 ORTHO05D004169 1.6e-11 73.9 74 45.9
CAN.G874.6 Capsicum annuum HOM05D003583 ORTHO05D004169 2.7e-11 73.2 74 45.9
Rhsim01G0252900 Rhododendron simsii HOM05D003583 ORTHO05D004169 2.7e-11 73.2 106 41.5
Solyc06g083350.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 2.7e-11 73.2 222 32.4
TPR.G6446 Trifolium pratense HOM05D003583 ORTHO05D004169 2.7e-11 73.2 74 47.3
PGR044G2014 Punica granatum HOM05D003583 ORTHO05D004169 3.5e-11 72.8 183 32.8
Solyc09g059500.3 Solanum lycopersicum HOM05D003583 ORTHO05D004169 3.5e-11 72.8 220 32.3
Sopen06g034720 Solanum pennellii HOM05D003583 ORTHO05D004169 4.6e-11 72.4 222 32.4
BcaC05g29745 Brassica carinata HOM05D003583 ORTHO05D004169 6.0e-11 72.0 116 36.2
BcaC05g29851 Brassica carinata HOM05D003583 ORTHO05D004169 6.0e-11 72.0 73 45.2
A05p40990 Brassica napus HOM05D003583 ORTHO05D004169 6.0e-11 72.0 73 45.2
C05p60140 Brassica napus HOM05D003583 ORTHO05D004169 6.0e-11 72.0 73 45.2
BolC5t34665H Brassica oleracea HOM05D003583 ORTHO05D004169 6.0e-11 72.0 73 45.2
BraA05t22826Z Brassica rapa HOM05D003583 ORTHO05D004169 6.0e-11 72.0 73 45.2
Sed0011833 Sechium edule HOM05D003583 ORTHO05D004169 6.0e-11 72.0 146 34.2
SalBow6G4396 Salvia bowleyana HOM05D003583 ORTHO05D004169 7.8e-11 71.6 105 39.0
SalBow6G5082 Salvia bowleyana HOM05D003583 ORTHO05D004169 7.8e-11 71.6 105 39.0
Sc05g0001940 Simmondsia chinensis HOM05D003583 ORTHO05D004169 7.8e-11 71.6 72 47.2
Nitab4.5_0003020g0040 Nicotiana tabacum HOM05D003583 ORTHO05D004169 1.3e-10 70.9 79 46.8
Ca_03474_v3 Cicer arietinum L. HOM05D003583 ORTHO05D004169 2.3e-10 70.1 74 48.6
SGA_v2.0_scaffold3G01637 Striga asiatica HOM05D003583 ORTHO05D004169 2.3e-10 70.1 133 36.8
Medtr7g055863 Medicago truncatula HOM05D003583 ORTHO05D004169 3.0e-10 69.7 74 47.3
Os11g0463600 Oryza sativa ssp. japonica HOM05D003583 ORTHO05D004169 3.0e-10 69.7 88 43.2
FAN27G2245 Fragaria x ananassa HOM05D003583 ORTHO05D004169 3.9e-10 69.3 110 40.9
AL3G18560 Arabidopsis lyrata HOM05D003583 ORTHO05D004169 5.0e-10 68.9 129 34.1
SEGI_22924 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 5.0e-10 68.9 172 34.3
BraA09t36092Z Brassica rapa HOM05D003583 ORTHO05D004169 6.6e-10 68.6 150 35.3
vmacro14733 Vaccinium macrocarpon HOM05D003583 ORTHO05D004169 6.6e-10 68.6 142 34.5
FAN15G2515 Fragaria x ananassa HOM05D003583 ORTHO05D004169 8.6e-10 68.2 107 41.1
SGA_v2.0_scaffold6G03502 Striga asiatica HOM05D003583 ORTHO05D004169 2.5e-09 66.6 96 41.7
BcaC04g23769 Brassica carinata HOM05D003583 ORTHO05D004169 4.3e-09 65.9 150 35.3
C09p04880 Brassica napus HOM05D003583 ORTHO05D004169 4.3e-09 65.9 150 35.3
BolC9t53416H Brassica oleracea HOM05D003583 ORTHO05D004169 4.3e-09 65.9 150 35.3
Gohir.A08G195500 Gossypium hirsutum HOM05D003583 ORTHO05D004169 4.3e-09 65.9 212 31.1
Nitab4.5_0000045g0500 Nicotiana tabacum HOM05D003583 ORTHO05D004169 5.6e-09 65.5 96 38.5
BcaB04g19581 Brassica carinata HOM05D003583 ORTHO05D004169 7.3e-09 65.1 74 45.9
Thhalv10004601m.g Eutrema salsugineum HOM05D003583 ORTHO05D004169 7.3e-09 65.1 167 31.7
HPP92_008214 Vanilla planifolia HOM05D003583 ORTHO05D004169 7.3e-09 65.1 106 33.0
A09p04570 Brassica napus HOM05D003583 ORTHO05D004169 2.8e-08 63.2 150 34.7
Gorai.004G226900 Gossypium raimondii HOM05D003583 ORTHO05D004169 8.1e-08 61.6 121 36.4
Haze_15252 Corylus avellana HOM05D003583 ORTHO05D004169 1.1e-07 61.2 152 35.5
Lalb_Chr19g0125851 Lupinus albus HOM05D003583 ORTHO05D004169 1.8e-07 60.5 88 35.2
Sp2g19040 Schrenkiella parvula HOM05D003583 ORTHO05D004169 4.0e-07 59.3 223 33.2
Atru.chr6.1424 Acer truncatum HOM05D003583 ORTHO05D004169 6.8e-07 58.5 153 35.9
Zm00001eb169940 Zea mays HOM05D003583 ORTHO05D004169 2.6e-06 56.6 91 37.4


User provided reference genes

Program Settings