Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.6e-99 366.3 210 100.0
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.4e-76 289.3 212 76.4
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 9.5e-73 277.3 211 73.0
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 8.3e-69 264.2 209 65.6
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 7.3e-65 251.1 209 64.6
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.2e-64 250.4 213 70.9
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 8.1e-64 247.7 211 62.6
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 8.1e-64 247.7 211 62.6
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.4e-63 246.9 210 69.5
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.4e-63 246.9 210 69.5
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.8e-63 246.5 210 66.7
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 3.1e-63 245.7 215 62.3
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-62 243.8 210 69.0
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.2e-62 243.8 209 70.3
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.5e-62 243.4 208 71.6
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.5e-62 243.4 206 62.6
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.5e-62 243.4 212 67.0
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 2.0e-62 243.0 208 70.7
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 3.4e-62 242.3 209 70.3
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 3.4e-62 242.3 212 67.5
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 4.4e-62 241.9 213 70.9
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.3e-61 240.4 206 68.9
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 3.8e-61 238.8 215 59.5
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.8e-61 238.8 208 64.9
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.4e-60 236.9 213 58.2
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.4e-60 236.9 207 71.0
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.4e-60 236.9 208 65.9
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.9e-60 236.5 207 63.3
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 2.4e-60 236.1 204 68.1
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 4.2e-60 235.3 210 65.7
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.1e-60 234.6 213 61.5
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 2.7e-59 232.6 203 70.4
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 7.8e-59 231.1 221 62.0
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.7e-58 229.9 214 62.6
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 3.9e-58 228.8 214 60.3
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 6.6e-58 228.0 215 60.9
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 6.6e-58 228.0 208 66.3
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 6.6e-58 228.0 208 69.7
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 1.1e-57 227.3 210 61.4
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.5e-57 226.9 212 62.3
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.5e-57 226.9 205 65.9
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-57 226.9 204 65.2
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-57 226.9 205 65.9
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.5e-57 226.9 214 59.8
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 1.5e-57 226.9 208 69.7
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.3e-57 225.7 205 62.9
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 4.3e-57 225.3 208 56.2
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.6e-57 224.9 213 59.2
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 9.6e-57 224.2 217 66.8
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 9.6e-57 224.2 202 61.9
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.6e-56 223.4 207 70.5
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 2.1e-56 223.0 207 55.1
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.1e-56 223.0 211 68.7
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 3.6e-56 222.2 202 66.8
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 4.8e-56 221.9 218 66.1
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 8.1e-56 221.1 211 65.9
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.1e-55 220.7 210 62.4
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.4e-55 219.5 214 54.7
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.4e-55 219.5 211 64.5
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.4e-55 219.5 207 54.6
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 4.0e-55 218.8 208 55.3
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 4.0e-55 218.8 205 55.6
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 4.0e-55 218.8 228 60.5
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 5.3e-55 218.4 197 60.9
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 5.3e-55 218.4 211 58.3
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 6.9e-55 218.0 213 58.2
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 6.9e-55 218.0 214 55.6
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 9.0e-55 217.6 208 67.8
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.2e-54 217.2 208 57.2
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.2e-54 217.2 214 55.6
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.2e-54 217.2 210 62.9
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.5e-54 216.9 209 54.5
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.5e-54 216.9 214 53.7
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.5e-54 216.9 217 59.4
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.0e-54 216.5 203 55.2
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 2.0e-54 216.5 216 63.0
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.6e-54 216.1 212 58.0
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 2.6e-54 216.1 212 58.0
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 3.4e-54 215.7 220 60.5
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 4.4e-54 215.3 214 62.6
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 5.8e-54 214.9 210 61.9
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 9.9e-54 214.2 204 69.1
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.3e-53 213.8 209 56.5
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 3.8e-53 212.2 216 58.3
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.1e-52 210.7 213 53.1
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 4.2e-52 208.8 213 59.2
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 5.4e-52 208.4 213 53.1
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 9.3e-52 207.6 221 60.2
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 9.3e-52 207.6 214 59.8
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 2.1e-51 206.5 203 58.1
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 6.0e-51 204.9 217 59.4
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 3.0e-50 202.6 215 55.8
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 6.6e-50 201.4 211 56.4
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 6.6e-50 201.4 212 51.9
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 8.7e-50 201.1 211 56.4
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.1e-49 200.7 167 64.7
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 2.5e-49 199.5 209 56.5
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 5.6e-49 198.4 220 55.9
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 9.6e-49 197.6 221 58.4
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 9.6e-49 197.6 215 55.3
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.8e-47 193.4 194 63.9
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.9e-47 191.4 203 59.1
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 6.9e-47 191.4 153 64.7
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.5e-46 190.3 219 51.6
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 3.4e-46 189.1 208 58.2
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 7.6e-46 188.0 155 63.9
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 9.9e-46 187.6 189 53.4
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.3e-45 187.2 209 54.1
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 2.2e-45 186.4 221 52.5
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.9e-45 185.3 209 55.0
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.9e-44 183.3 215 53.0
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.4e-44 183.0 201 55.7
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 3.3e-41 172.6 222 55.4
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 9.6e-41 171.0 138 71.0
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.6e-40 170.2 196 55.1
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.4e-39 166.4 202 48.0
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.5e-38 163.7 190 51.6
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.3e-37 160.6 215 44.2
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.9e-37 159.5 126 63.5
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 6.5e-37 158.3 157 50.3
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 8.4e-37 157.9 224 44.6
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.9e-36 156.8 211 41.7
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 5.5e-36 155.2 219 45.2
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 3.9e-34 149.1 144 56.2
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 1.5e-33 147.1 205 44.4
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 4.3e-33 145.6 203 42.4
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.6e-32 143.7 145 52.4
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 2.1e-32 143.3 211 38.9
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.8e-32 142.1 121 65.3
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.1e-31 141.0 136 55.9
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.1e-31 139.0 121 64.5
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 4.5e-30 135.6 217 38.7
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 4.5e-30 135.6 131 59.5
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 2.9e-29 132.9 150 45.3
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 4.2e-28 129.0 124 59.7
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.7e-27 126.3 146 49.3
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 5.1e-26 122.1 151 43.0
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.3e-24 117.5 93 54.8
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 1.3e-24 117.5 117 58.1
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.2e-24 116.7 190 36.3
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.8e-23 113.6 196 40.3
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 5.3e-23 112.1 209 35.4
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 6.9e-23 111.7 110 53.6
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 7.7e-22 108.2 84 52.4
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 2.2e-21 106.7 85 52.9
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.6e-19 100.5 119 42.0
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.1e-19 100.1 91 50.5
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.7e-19 99.8 84 47.6
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 3.0e-18 96.3 201 38.3
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 3.9e-18 95.9 111 53.2
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 3.7e-16 89.4 109 52.3
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 8.2e-16 88.2 110 42.7
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.4e-12 77.4 110 44.5
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 3.0e-10 69.7 83 50.6
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 2.0e-09 67.0 90 46.7
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 4.4e-09 65.9 83 42.2
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 1.1e-07 61.2 88 42.0


User provided reference genes

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