Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 2340.8 1214 100.0
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1873.6 1213 80.8
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1667.1 1221 72.7
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1632.5 1206 72.1
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1622.4 1224 70.5
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1619.4 1204 71.9
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1612.4 1230 71.6
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1605.1 1205 71.4
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1590.5 1250 68.2
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1586.2 1212 70.2
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1573.9 1251 68.6
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1563.9 1214 69.4
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1561.2 1222 69.1
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1559.7 1225 68.8
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1556.2 1203 69.4
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1556.2 1218 68.7
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1552.3 1218 68.6
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1550.8 1225 68.2
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1548.9 1217 68.5
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1544.3 1216 68.4
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1538.9 1224 67.8
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1538.1 1219 68.6
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1535.8 1226 67.8
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1527.3 1207 67.2
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1520.0 1226 66.7
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1519.6 1216 67.1
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1511.9 1212 67.7
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1509.2 1218 65.5
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1504.2 1220 66.5
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1499.6 1154 69.1
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1496.9 1166 68.8
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1495.7 1222 67.0
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1492.2 1216 66.0
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1489.6 1219 65.7
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1481.8 1235 64.2
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1481.1 1222 65.2
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1477.6 1214 66.6
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1476.8 1217 65.0
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1466.4 1235 63.9
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1466.1 1215 65.0
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1465.3 1235 63.7
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1465.3 1219 65.5
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1458.4 1214 65.2
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1456.8 1197 65.2
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1455.7 1235 63.4
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1453.3 1245 64.5
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1449.9 1216 64.9
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1449.1 1218 65.4
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1448.0 1214 64.7
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1446.8 1345 61.6
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1443.7 1221 64.6
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1443.7 1220 63.4
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1439.1 1211 64.6
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1438.7 1232 64.8
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1437.9 1216 64.1
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1436.8 1208 64.6
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1436.4 1241 63.9
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1435.6 1193 65.0
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1435.2 1216 64.6
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1435.2 1207 65.4
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1434.5 1211 64.7
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1431.8 1246 63.8
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1431.4 1259 63.1
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1431.4 1259 63.1
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1429.1 1260 63.0
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1429.1 1214 64.4
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1427.5 1158 65.2
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1427.2 1222 64.3
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1424.8 1209 64.4
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1415.6 1201 63.3
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1412.9 1216 63.6
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1409.8 1427 57.0
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1405.2 1222 63.7
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1394.4 1179 64.8
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1388.6 1221 62.1
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1382.5 1230 62.4
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1382.5 1230 62.4
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1377.5 1218 62.5
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1376.7 1205 61.5
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1375.1 1182 62.8
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1370.1 1145 64.4
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1363.2 1204 62.5
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1362.8 1216 61.9
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1350.9 1221 61.0
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1350.1 1236 60.0
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1349.0 1218 60.9
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1346.3 1206 61.5
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1335.1 1254 60.4
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1321.6 1153 63.4
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1308.5 1240 59.8
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1290.4 1146 62.3
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1246.9 1203 58.3
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1239.9 1027 64.0
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 0.0e+00 1228.4 1203 58.8
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1214.9 1185 58.5
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1197.2 1075 60.5
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 0.0e+00 1191.8 1169 56.8
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1164.1 1077 60.1
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1149.0 1196 56.0
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1146.0 1127 55.8
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 0.0e+00 1129.0 1235 54.8
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1129.0 977 63.2
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1125.9 1224 54.3
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 0.0e+00 1116.3 1146 54.8
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1090.5 839 70.0
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 3.0e-288 995.7 763 70.4
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 9.8e-287 990.7 945 58.1
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 4.3e-266 922.2 1258 46.1
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 1.2e-252 877.5 1291 43.6
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 5.6e-250 868.6 680 67.2
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 2.6e-247 859.8 747 61.6
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.3e-242 841.6 680 65.4
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 8.7e-227 791.6 1161 43.6
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.9e-226 790.4 636 64.6
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 1.1e-218 764.6 668 60.0
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 9.0e-216 755.0 708 59.7
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 8.7e-211 738.4 616 63.3
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 3.2e-205 719.9 696 58.6
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 1.1e-202 711.4 601 64.2
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 2.5e-202 710.3 1144 41.8
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.8e-184 651.0 598 61.0
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 3.1e-168 597.0 522 60.3
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 6.6e-158 562.8 1512 31.2
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 6.6e-158 562.8 457 65.6
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 8.6e-158 562.4 456 66.2
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 6.6e-150 536.2 431 66.4
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 2.4e-128 464.5 388 66.8
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 3.5e-127 460.7 241 98.8
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 5.2e-123 446.8 404 63.1
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 1.1e-99 369.4 422 50.7
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 7.6e-98 363.2 364 58.0
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.4e-91 342.4 313 56.5
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 3.8e-89 334.3 485 46.6
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.9e-88 332.0 262 69.8
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.2e-84 316.6 273 59.0
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 3.6e-79 301.2 279 55.2
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.0e-78 299.7 388 47.7
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 1.9e-72 278.9 225 61.8
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 8.8e-62 243.4 204 64.7
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 2.8e-60 238.4 180 63.3
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 2.7e-55 221.9 130 86.2
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.3e-48 198.4 211 53.1
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.1e-47 195.7 209 53.1
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.8e-47 195.3 209 52.6
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.0e-46 191.8 204 53.4
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.6e-45 188.7 183 57.4
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 1.1e-43 183.3 170 61.2
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 1.6e-39 169.5 106 74.5
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.3e-38 165.6 181 49.7
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.5e-37 162.9 134 59.0
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.8e-37 160.2 130 60.0
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 2.2e-36 159.1 150 53.3
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 1.4e-35 156.4 130 59.2
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.4e-35 154.5 132 68.2
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.5e-29 134.0 111 58.6
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 9.2e-27 127.1 95 73.7
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.0e-26 124.4 96 74.0
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.9e-25 121.7 114 55.3
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.5e-24 119.0 232 40.1
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.7e-20 105.1 64 79.7
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 2.1e-18 99.4 182 38.5
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.1e-16 93.6 107 56.1
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 7.3e-16 90.9 90 64.4
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 9.5e-16 90.5 57 78.9
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.8e-14 86.3 195 30.3
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.4e-14 85.9 63 68.3
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 2.4e-14 85.9 133 45.9
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 6.4e-12 77.8 123 36.6
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 3.9e-09 68.6 78 48.7
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 1.1e-08 67.0 78 59.0
TAR636G1681 Trochodendron aralioides HOM05D000172 ORTHO05D000273 1.9e-08 66.2 47 74.5
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 9.6e-08 63.9 132 40.2
Gohir.D13G142400 Gossypium hirsutum HOM05D000260 ORTHO05D020362 2.8e-07 62.4 63 65.1
Gohir.D02G008125 Gossypium hirsutum HOM05D004065 ORTHO05D000318 1.1e-06 60.5 63 63.5
Gorai.002G055300 Gossypium raimondii HOM05D000671 ORTHO05D000797 1.1e-06 60.5 67 59.7
Gorai.005G009800 Gossypium raimondii HOM05D004065 ORTHO05D020362 1.1e-06 60.5 63 63.5
SHI22584 Sapria himalayana HOM05D004065 ORTHO05D004806 1.4e-06 60.1 106 44.3
Gohir.D05G040350 Gossypium hirsutum HOM05D004065 ORTHO05D020362 4.0e-06 58.5 62 62.9


User provided reference genes

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