Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.9e-170 602.4 304 100.0
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.1e-84 316.6 239 63.6
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 1.9e-74 283.5 219 67.6
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 2.1e-73 280.0 228 59.2
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 6.2e-73 278.5 236 58.5
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 4.0e-72 275.8 238 57.1
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 6.8e-72 275.0 236 57.6
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.2e-70 270.0 226 59.3
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 3.8e-70 269.2 231 58.4
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 8.4e-70 268.1 236 56.4
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.1e-69 267.7 246 52.0
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 3.2e-69 266.2 226 58.4
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.2e-69 266.2 252 54.8
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.2e-69 266.2 271 50.6
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 3.2e-69 266.2 236 57.6
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 3.2e-69 266.2 236 55.9
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 4.2e-69 265.8 240 56.2
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 4.2e-69 265.8 240 56.2
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 5.4e-69 265.4 240 56.2
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.4e-69 265.4 248 54.8
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 9.3e-69 264.6 244 55.3
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.2e-68 264.2 238 55.9
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.2e-68 264.2 273 51.3
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.2e-68 264.2 245 55.1
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.6e-68 263.8 236 57.6
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.1e-68 263.5 238 54.6
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.7e-68 263.1 245 55.1
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 2.7e-68 263.1 236 55.9
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 3.5e-68 262.7 250 54.4
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 4.6e-68 262.3 247 53.8
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 6.0e-68 261.9 242 53.7
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 7.8e-68 261.5 238 55.0
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.0e-67 261.2 240 55.8
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 1.7e-67 260.4 248 52.8
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 2.3e-67 260.0 252 52.8
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.3e-67 260.0 236 55.5
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.3e-67 260.0 236 55.5
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 2.3e-67 260.0 238 55.0
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 3.0e-67 259.6 242 53.3
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 5.1e-67 258.8 236 55.9
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 5.1e-67 258.8 238 54.6
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 5.1e-67 258.8 262 52.3
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 8.7e-67 258.1 238 53.8
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.1e-66 257.7 233 54.5
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.5e-66 257.3 236 54.7
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.5e-66 256.5 236 54.7
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.5e-66 256.5 238 54.6
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 3.3e-66 256.1 251 53.4
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 4.3e-66 255.8 237 56.1
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 4.3e-66 255.8 247 53.8
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 5.6e-66 255.4 231 56.7
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 7.3e-66 255.0 232 54.3
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.3e-65 254.2 238 53.8
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.6e-65 253.8 245 53.5
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.6e-65 253.8 242 51.2
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 1.6e-65 253.8 227 55.1
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 2.1e-65 253.4 233 54.5
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 4.8e-65 252.3 253 51.4
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 4.8e-65 252.3 233 54.1
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 4.8e-65 252.3 233 54.5
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 6.2e-65 251.9 229 55.0
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 6.2e-65 251.9 229 55.0
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 6.2e-65 251.9 242 52.1
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 6.2e-65 251.9 233 54.1
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 6.2e-65 251.9 233 54.1
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 8.1e-65 251.5 242 51.2
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 8.1e-65 251.5 231 51.9
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 8.1e-65 251.5 238 53.4
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 8.1e-65 251.5 246 52.4
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.1e-64 251.1 232 54.3
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.1e-64 251.1 239 54.0
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.1e-64 251.1 238 54.6
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.4e-64 250.8 233 54.9
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.4e-64 250.0 236 53.0
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 2.4e-64 250.0 240 49.6
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 2.4e-64 250.0 240 52.1
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 3.1e-64 249.6 234 53.8
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 4.0e-64 249.2 233 53.6
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 5.3e-64 248.8 231 54.1
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 6.9e-64 248.4 236 52.5
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 9.0e-64 248.1 231 54.5
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 9.0e-64 248.1 231 55.4
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 1.2e-63 247.7 232 50.4
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 1.2e-63 247.7 233 52.4
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.2e-63 247.7 235 52.3
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 1.2e-63 247.7 235 52.8
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.5e-63 247.3 231 53.2
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 2.6e-63 246.5 247 50.2
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 2.6e-63 246.5 242 50.0
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 2.6e-63 246.5 231 54.1
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 5.8e-63 245.4 231 54.5
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 5.8e-63 245.4 231 53.2
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 9.9e-63 244.6 238 51.7
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 9.9e-63 244.6 238 51.7
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 9.9e-63 244.6 242 52.1
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 2.2e-62 243.4 233 53.2
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 2.2e-62 243.4 232 51.7
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 2.9e-62 243.0 286 43.7
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 4.9e-62 242.3 236 53.0
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 6.4e-62 241.9 232 52.6
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 6.4e-62 241.9 233 52.8
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 6.4e-62 241.9 233 52.8
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 6.4e-62 241.9 237 53.6
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 8.4e-62 241.5 226 53.5
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.9e-61 240.4 233 52.4
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.9e-61 240.4 233 52.4
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 1.9e-61 240.4 266 49.2
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.9e-61 240.4 231 51.9
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 2.4e-61 240.0 233 51.9
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 2.4e-61 240.0 270 48.1
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 4.2e-61 239.2 233 51.9
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 4.2e-61 239.2 238 51.7
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 5.4e-61 238.8 232 50.4
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 7.1e-61 238.4 233 51.9
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 7.1e-61 238.4 201 59.7
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 9.3e-61 238.0 233 51.9
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.2e-60 237.7 233 52.4
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 1.2e-60 237.7 228 52.6
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.2e-60 237.7 234 52.6
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.6e-60 237.3 233 51.9
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.1e-60 236.9 201 58.2
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 2.7e-60 236.5 233 51.5
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 2.7e-60 236.5 226 50.0
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 3.5e-60 236.1 233 51.9
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 3.5e-60 236.1 231 52.8
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 4.6e-60 235.7 222 52.3
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 6.0e-60 235.3 233 52.8
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 7.9e-60 235.0 240 50.8
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.0e-59 234.6 201 58.2
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 1.0e-59 234.6 237 51.5
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.3e-59 234.2 237 52.3
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 3.9e-59 232.6 296 44.9
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.9e-59 232.6 240 50.4
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 5.1e-59 232.3 254 48.0
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 1.9e-58 230.3 232 50.0
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.0e-56 222.6 253 46.6
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 9.0e-56 221.5 224 50.0
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 2.0e-55 220.3 253 45.1
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 2.0e-55 220.3 253 45.1
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 5.1e-51 205.7 233 48.1
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 1.3e-46 191.0 173 52.0
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.3e-43 180.3 170 52.9
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 2.5e-42 176.8 209 42.1
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 2.8e-41 173.3 181 47.5
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 1.5e-39 167.5 206 43.2
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.8e-35 154.1 138 53.6
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 2.3e-35 153.7 224 37.1
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.1e-32 144.8 201 40.8
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 5.3e-32 142.5 210 43.8
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 2.0e-31 140.6 117 59.0
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 3.4e-31 139.8 253 31.2
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 2.1e-28 130.6 228 32.5
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.7e-28 130.2 129 52.7
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 2.3e-27 127.1 129 51.2
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 1.1e-26 124.8 148 45.3
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 3.3e-26 123.2 120 50.0
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 9.4e-21 105.1 202 30.7
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 7.9e-20 102.1 88 55.7
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.1e-18 98.2 92 47.8
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 8.2e-17 92.0 214 28.0
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.6e-15 87.8 103 43.7
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 5.5e-13 79.3 104 43.3
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.2e-13 79.0 76 52.6
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-11 74.7 129 38.8
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 1.1e-10 71.6 186 24.7
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 2.9e-06 57.0 56 50.0
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 2.9e-06 57.0 40 72.5


User provided reference genes

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