Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 4.4e-118 427.9 211 100.0
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 1.9e-76 289.7 269 61.3
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 2.6e-70 269.2 269 57.2
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 4.4e-70 268.5 265 58.1
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 1.1e-68 263.8 264 57.2
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 2.1e-67 259.6 269 54.6
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.7e-67 259.2 271 55.0
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.7e-67 259.2 271 55.0
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.3e-66 256.9 271 54.6
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 1.1e-65 253.8 268 53.7
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 3.3e-65 252.3 268 54.9
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.3e-65 252.3 271 53.9
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 3.3e-65 252.3 272 53.7
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.6e-64 248.8 265 54.3
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.6e-64 248.8 265 54.3
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 4.8e-64 248.4 267 53.6
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 6.2e-64 248.1 269 53.2
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 6.2e-64 248.1 267 53.9
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 1.2e-62 243.8 267 52.4
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 2.6e-62 242.7 271 53.1
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 2.6e-62 242.7 271 53.1
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 4.5e-62 241.9 271 53.1
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 7.6e-62 241.1 272 52.6
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 7.6e-62 241.1 268 53.0
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 9.9e-62 240.7 258 53.5
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 9.9e-62 240.7 258 53.5
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.9e-61 238.4 257 54.9
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.9e-61 238.4 257 54.9
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 1.1e-60 237.3 242 55.4
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.1e-60 234.6 251 53.8
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 1.2e-59 233.8 269 51.7
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.6e-59 233.4 238 55.5
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 2.7e-59 232.6 242 55.4
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 1.0e-58 230.7 267 50.9
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 1.0e-58 230.7 267 50.9
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 1.0e-58 230.7 267 50.9
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 1.0e-58 230.7 267 50.9
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 1.8e-58 229.9 264 51.5
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 3.0e-58 229.2 264 50.8
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 5.6e-57 224.9 240 54.6
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.4e-57 224.6 248 52.4
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 6.2e-56 221.5 274 51.1
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-55 220.3 258 51.6
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.8e-55 219.9 258 51.6
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 2.4e-55 219.5 236 54.7
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 4.0e-55 218.8 269 48.7
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 4.0e-55 218.8 269 48.7
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 5.3e-55 218.4 178 65.7
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 7.1e-52 208.0 222 55.0
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 7.1e-52 208.0 234 53.4
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 3.5e-51 205.7 241 51.9
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 1.8e-50 203.4 218 55.0
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 2.8e-48 196.1 219 53.4
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 2.8e-48 196.1 219 53.4
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 2.8e-48 196.1 219 53.4
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 2.8e-48 196.1 219 53.4
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 2.8e-48 196.1 219 53.4
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 1.4e-47 193.7 253 47.0
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 2.4e-47 193.0 269 45.7
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 9.0e-47 191.0 251 48.2
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 5.8e-46 188.3 255 49.8
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 1.9e-44 183.3 256 45.3
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 7.1e-44 181.4 220 48.6
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.9e-42 175.6 225 48.4
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 3.9e-42 175.6 254 46.5
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 5.5e-36 155.2 219 45.2
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.2e-35 154.1 158 55.1
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 3.9e-34 149.1 173 51.4
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 8.8e-34 147.9 226 42.0
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.5e-33 147.1 218 45.9
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 1.7e-32 143.7 113 68.1
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 9.1e-31 137.9 162 52.5
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 1.1e-28 131.0 160 49.4
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 4.8e-24 115.5 65 92.3
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 6.3e-24 115.2 159 45.9
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.8e-23 113.6 104 58.7
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.2e-22 110.9 101 56.4
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 2.5e-20 103.2 103 54.4
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 4.2e-20 102.4 110 49.1
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 9.4e-20 101.3 149 45.6
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 3.6e-19 99.4 93 57.0
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.7e-19 99.0 135 46.7
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 6.1e-19 98.6 134 46.3
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 6.1e-19 98.6 67 73.1
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.4e-18 97.4 67 70.1
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.0e-17 93.6 69 68.1
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 3.3e-17 92.8 116 46.6
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 3.3e-17 92.8 116 46.6
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.3e-17 92.8 63 71.4
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.7e-17 92.0 104 53.8
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 7.5e-17 91.7 97 50.5
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.1e-15 87.8 73 60.3
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 2.4e-15 86.7 93 51.6
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 2.4e-15 86.7 93 51.6
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 2.4e-15 86.7 93 51.6
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 2.4e-15 86.7 93 51.6
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 2.4e-15 86.7 93 51.6
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 2.2e-13 80.1 81 55.6
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 2.2e-13 80.1 74 59.5
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 5.0e-13 79.0 70 64.3
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 8.5e-13 78.2 70 61.4
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 3.2e-12 76.3 93 50.5
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.2e-11 74.3 50 74.0
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 1.8e-10 70.5 59 61.0
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.1e-07 61.2 49 63.3
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 3.1e-07 59.7 78 48.7
Gorai.006G008300 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.1e-07 59.7 79 43.0
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 4.1e-07 59.3 65 52.3
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 5.4e-07 58.9 54 51.9
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 7.0e-07 58.5 38 68.4
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 9.1e-07 58.2 39 71.8
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 1.2e-06 57.8 39 71.8
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 1.2e-06 57.8 39 71.8
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 1.2e-06 57.8 39 71.8
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.6e-06 57.4 39 69.2
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 3.5e-06 56.2 39 69.2


User provided reference genes

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