Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 3.5e-185 651.4 307 100.0
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.9e-69 266.9 246 59.8
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 6.7e-43 178.7 253 42.3
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.2e-42 177.9 259 42.5
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.3e-41 174.5 162 53.1
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 3.5e-39 166.4 233 39.5
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 6.5e-38 162.2 183 47.0
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 1.9e-37 160.6 206 45.6
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 4.2e-37 159.5 186 46.8
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.6e-36 157.5 176 47.7
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 5.2e-35 152.5 170 47.1
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 8.8e-35 151.8 174 47.7
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 3.4e-34 149.8 190 42.6
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 3.4e-34 149.8 190 42.6
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 1.3e-33 147.9 222 38.7
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 1.7e-33 147.5 174 43.1
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 8.3e-33 145.2 181 46.4
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 8.3e-33 145.2 181 46.4
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 1.8e-32 144.1 177 41.2
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 3.1e-32 143.3 174 44.8
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 4.1e-32 142.9 174 43.7
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 5.4e-32 142.5 166 47.0
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 1.2e-31 141.4 194 37.6
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 1.2e-31 141.4 170 42.4
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.5e-31 139.8 183 42.6
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 4.5e-31 139.4 173 42.8
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 5.9e-31 139.0 191 40.8
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 7.7e-31 138.7 229 38.0
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 7.7e-31 138.7 226 37.6
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 7.7e-31 138.7 175 42.3
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 1.0e-30 138.3 162 42.6
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 1.3e-30 137.9 214 36.4
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 1.3e-30 137.9 214 36.4
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.7e-30 137.5 160 43.8
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.9e-30 136.7 178 43.3
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 2.9e-30 136.7 163 43.6
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 3.8e-30 136.3 174 41.4
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 5.0e-30 136.0 169 45.0
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 6.5e-30 135.6 170 42.4
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 8.5e-30 135.2 179 42.5
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 8.5e-30 135.2 219 36.5
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.1e-29 134.8 160 41.9
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.5e-29 134.4 163 46.6
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 1.5e-29 134.4 206 36.9
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 1.9e-29 134.0 168 39.9
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 1.9e-29 134.0 163 41.1
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.5e-29 133.7 179 40.8
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.5e-29 133.7 178 41.0
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.5e-29 133.7 177 38.4
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.2e-29 133.3 215 38.1
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 4.2e-29 132.9 185 37.8
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 4.2e-29 132.9 185 37.8
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 4.2e-29 132.9 178 39.9
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 4.2e-29 132.9 158 41.8
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 5.5e-29 132.5 186 38.7
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 7.2e-29 132.1 167 44.3
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 9.5e-29 131.7 215 37.2
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 9.5e-29 131.7 190 36.8
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 9.5e-29 131.7 171 41.5
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 9.5e-29 131.7 162 41.4
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 9.5e-29 131.7 169 42.6
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.2e-28 131.3 172 40.1
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 1.2e-28 131.3 172 39.5
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.6e-28 131.0 203 36.9
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.6e-28 131.0 174 42.0
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 2.1e-28 130.6 172 39.5
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 2.8e-28 130.2 171 40.4
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.8e-28 130.2 171 40.4
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 2.8e-28 130.2 172 40.1
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 3.6e-28 129.8 224 35.3
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 3.6e-28 129.8 176 44.3
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 3.6e-28 129.8 172 41.3
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 4.7e-28 129.4 177 37.9
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 4.7e-28 129.4 177 37.9
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 6.1e-28 129.0 189 37.6
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 6.1e-28 129.0 205 38.5
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 6.1e-28 129.0 164 39.6
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 8.0e-28 128.6 176 39.2
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 8.0e-28 128.6 195 38.5
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 8.0e-28 128.6 173 40.5
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.4e-27 127.9 198 40.9
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.3e-27 127.1 162 42.0
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 2.3e-27 127.1 182 41.8
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.3e-27 127.1 205 38.0
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 2.3e-27 127.1 165 37.6
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 3.0e-27 126.7 182 39.6
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 3.0e-27 126.7 177 36.7
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 4.0e-27 126.3 203 37.9
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 4.0e-27 126.3 174 42.0
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 5.2e-27 125.9 169 40.8
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 5.2e-27 125.9 164 39.6
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 5.2e-27 125.9 165 40.0
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 6.8e-27 125.6 175 40.0
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 6.8e-27 125.6 175 40.0
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 8.8e-27 125.2 164 40.2
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 8.8e-27 125.2 176 40.9
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 8.8e-27 125.2 183 36.1
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.2e-26 124.8 175 42.3
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 1.2e-26 124.8 175 39.4
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 1.2e-26 124.8 181 40.3
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 1.5e-26 124.4 166 38.6
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 2.0e-26 124.0 168 38.7
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 2.0e-26 124.0 169 42.0
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 2.6e-26 123.6 166 38.6
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 5.7e-26 122.5 175 40.0
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 5.7e-26 122.5 175 40.0
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 7.5e-26 122.1 175 38.9
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 7.5e-26 122.1 175 38.9
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 9.8e-26 121.7 165 38.8
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 9.8e-26 121.7 202 39.6
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.3e-25 121.3 157 40.8
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.3e-25 121.3 161 40.4
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 1.7e-25 120.9 172 39.5
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.7e-25 120.9 180 37.8
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 2.8e-25 120.2 175 39.4
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 3.7e-25 119.8 163 38.7
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 6.3e-25 119.0 175 39.4
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 6.3e-25 119.0 175 38.9
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 6.3e-25 119.0 175 38.9
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 6.3e-25 119.0 189 37.0
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 6.3e-25 119.0 170 36.5
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.1e-24 118.2 156 42.3
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 1.8e-24 117.5 182 39.6
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.4e-24 117.1 173 36.4
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 3.1e-24 116.7 179 36.9
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 3.1e-24 116.7 184 38.6
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 9.2e-24 115.2 219 35.6
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.6e-23 114.4 161 39.8
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 2.7e-23 113.6 169 39.1
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 4.5e-23 112.8 184 37.0
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.3e-22 111.3 177 37.9
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 2.3e-22 110.5 182 37.4
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 5.0e-22 109.4 171 37.4
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 6.6e-22 109.0 185 36.2
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 1.1e-21 108.2 173 35.8
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.1e-21 108.2 185 36.2
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 1.9e-21 107.5 170 39.4
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.5e-21 107.1 185 35.7
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 5.6e-21 105.9 131 39.7
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 5.6e-21 105.9 128 43.0
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 7.3e-21 105.5 142 39.4
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 3.6e-20 103.2 177 34.5
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 8.0e-20 102.1 166 36.7
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 1.8e-19 100.9 184 35.9
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.3e-19 100.5 147 37.4
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 2.3e-19 100.5 166 36.7
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 6.8e-19 99.0 222 32.0
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 6.8e-19 99.0 166 36.1
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 6.8e-19 99.0 169 37.3
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 8.9e-19 98.6 164 35.4
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.0e-18 97.4 167 36.5
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 3.4e-18 96.7 166 30.7
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.7e-18 95.9 127 37.8
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.2e-17 94.0 127 37.8
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 1.6e-15 87.8 166 30.7
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 8.6e-14 82.0 92 44.6
CBR_g24287 Chara braunii HOM05D004173 ORTHO05D004885 1.5e-13 81.3 230 30.0
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 5.6e-13 79.3 80 50.0
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.8e-12 77.0 114 41.2
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.3e-11 73.9 131 34.4
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.5e-10 71.2 149 32.2
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.2e-08 63.5 85 40.0
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 9.2e-08 62.0 66 47.0
SEGI_40362 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 9.2e-08 62.0 109 33.9
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 1.2e-07 61.6 126 27.0
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.7e-06 57.8 146 30.8


User provided reference genes

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