Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10299 Nelumbo nucifera HOM05D007752 ORTHO05D009994 9.7e-209 730.7 645 100.0
PSO170G5102 Papaver somniferum HOM05D007752 ORTHO05D009994 2.9e-27 127.9 174 40.2
PSO017G1004 Papaver somniferum HOM05D007752 ORTHO05D009994 8.3e-27 126.3 174 39.7
CSS0006720 Camellia sinensis var. sinensis HOM05D007752 ORTHO05D009994 2.3e-24 118.2 510 54.9
Dinv16979 Davidia involucrata HOM05D007752 ORTHO05D009994 7.3e-23 113.2 245 35.9
CSS0000350 Camellia sinensis var. sinensis HOM05D007752 ORTHO05D009994 3.6e-22 110.9 510 57.8
CiPaw.10G164800 Carya illinoinensis HOM05D007752 ORTHO05D009994 1.7e-19 102.1 504 50.4
COL.COLO4_06481 Corchorus olitorius HOM05D007752 ORTHO05D000248 2.4e-18 98.2 432 66.4
MBI03_g22789_MAGBIO Magnolia biondii HOM05D007752 ORTHO05D009994 7.1e-18 96.7 86 57.0
TAR633G0335 Trochodendron aralioides HOM05D007752 ORTHO05D009994 3.9e-16 90.9 152 34.2
Ciclev10013314m.g Citrus clementina HOM05D007752 ORTHO05D009994 6.6e-16 90.1 84 54.8
CDE04G1037 Ceratophyllum demersum HOM05D007752 ORTHO05D009994 1.1e-15 89.4 89 44.9
ATR1127G173 Amborella trichopoda HOM05D007752 ORTHO05D009994 4.3e-15 87.4 90 50.0
MD04G1174700 Malus domestica HOM05D007752 ORTHO05D009994 7.3e-15 86.7 86 54.7
FAN02G1651 Fragaria x ananassa HOM05D007752 ORTHO05D009994 9.6e-15 86.3 85 48.2
Prupe.6G293600 Prunus persica HOM05D007752 ORTHO05D009994 1.2e-14 85.9 141 39.0
Thecc.04G151600 Theobroma cacao HOM05D007752 ORTHO05D009994 2.8e-14 84.7 83 47.0
ClCG10G022730 Citrullus lanatus HOM05D007752 ORTHO05D009994 3.6e-14 84.3 93 41.9
FvH4_6g09870 Fragaria vesca HOM05D007752 ORTHO05D009994 4.7e-14 84.0 85 47.1
Sc20g0006950 Simmondsia chinensis HOM05D007752 ORTHO05D009994 4.7e-14 84.0 93 41.9
FAN14G1029 Fragaria x ananassa HOM05D007752 ORTHO05D009994 1.1e-13 82.8 85 47.1
RcHm_v2.0_Chr3g0460471 Rosa chinensis HOM05D007752 ORTHO05D009994 1.8e-13 82.0 85 50.6
Cpa.g.sc86.57 Carica papaya HOM05D007752 ORTHO05D009994 3.1e-13 81.3 94 44.7
Eucgr.A00738 Eucalyptus grandis HOM05D007752 ORTHO05D009994 4.0e-13 80.9 91 40.7
Haze_21175 Corylus avellana HOM05D007752 ORTHO05D009994 5.3e-13 80.5 106 41.5
Oeu057981.1 Olea europaea HOM05D007752 ORTHO05D009994 6.9e-13 80.1 79 49.4
HPP92_024978 Vanilla planifolia HOM05D007752 ORTHO05D009994 6.9e-13 80.1 124 38.7
Hma1.2p1_0174F.1_g076820 Hydrangea macrophylla HOM05D007752 ORTHO05D009994 9.0e-13 79.7 107 43.0
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 1.2e-12 79.3 85 44.7
Glyma.09G274800 Glycine max HOM05D007752 ORTHO05D009994 1.2e-12 79.3 95 41.1
QL07p032115 Quercus lobata HOM05D007752 ORTHO05D009994 1.5e-12 79.0 101 42.6
Cfa017034 Carpinus fangiana HOM05D007752 ORTHO05D009994 2.0e-12 78.6 78 48.7
CANSAT35G0798 Cannabis sativa HOM05D007752 ORTHO05D009994 2.6e-12 78.2 107 40.2
Lj1g0026088 Lotus japonicus HOM05D007752 ORTHO05D009994 7.6e-12 76.6 93 38.7
Lj3P941T40 Lonicera japonica HOM05D007752 ORTHO05D009994 9.9e-12 76.3 163 29.4
MELO3C009103.2 Cucumis melo HOM05D007752 ORTHO05D009994 1.3e-11 75.9 93 38.7
Potri.016G136700 Populus trichocarpa HOM05D007752 ORTHO05D009994 2.9e-11 74.7 162 46.3
Zm00001eb016080 Zea mays HOM05D007752 ORTHO05D009994 2.9e-11 74.7 91 42.9
Rhsim04G0121800 Rhododendron simsii HOM05D007752 ORTHO05D009994 4.9e-11 73.9 90 45.6
Duzib151G0981 Durio zibethinus HOM05D007752 ORTHO05D009994 6.4e-11 73.6 102 39.2
Aqoxy4G02425 Aquilegia oxysepala HOM05D007752 ORTHO05D009994 8.4e-11 73.2 130 37.7
AUR62006417 Chenopodium quinoa HOM05D007752 ORTHO05D000248 1.4e-10 72.4 87 42.5
Gohir.A02G003300 Gossypium hirsutum HOM05D007752 ORTHO05D009994 1.4e-10 72.4 90 40.0
AUR62029765 Chenopodium quinoa HOM05D007752 ORTHO05D009994 2.4e-10 71.6 110 36.4
Gorai.005G004200 Gossypium raimondii HOM05D007752 ORTHO05D009994 2.4e-10 71.6 90 41.1
PGR031G1793 Punica granatum HOM05D007752 ORTHO05D009994 2.4e-10 71.6 92 46.7
VMungo1383G3403 Vigna mungo HOM05D007752 ORTHO05D009994 3.2e-10 71.2 90 36.7
Gohir.D02G003700 Gossypium hirsutum HOM05D007752 ORTHO05D009994 4.2e-10 70.9 90 41.1
Ah.08g209310 Amaranthus hybridus HOM05D007752 ORTHO05D009994 7.1e-10 70.1 90 37.8
SalBow8G2716 Salvia bowleyana HOM05D007752 ORTHO05D009994 1.2e-09 69.3 89 39.3
EL10Ac7g17101 Beta vulgaris HOM05D007752 ORTHO05D000248 3.5e-09 67.8 146 56.8
Ca_07763_v3 Cicer arietinum L. HOM05D007752 ORTHO05D009994 3.5e-09 67.8 83 41.0
Medtr7g073260 Medicago truncatula HOM05D007752 ORTHO05D009994 3.5e-09 67.8 65 47.7
Sed0005875 Sechium edule HOM05D007752 ORTHO05D009994 3.5e-09 67.8 80 40.0
TPR.G14113 Trifolium pratense HOM05D007752 ORTHO05D009994 3.5e-09 67.8 104 35.6
TWI77G0759 Tripterygium wilfordii HOM05D007752 ORTHO05D009994 6.0e-09 67.0 77 42.9
Sabra04G0153400 Salix brachista HOM05D007752 ORTHO05D009994 1.0e-08 66.2 181 28.2
Os03g0336000 Oryza sativa ssp. japonica HOM05D007752 ORTHO05D009994 1.3e-08 65.9 87 33.3
Phvul.008G082800 Phaseolus vulgaris HOM05D007752 ORTHO05D009994 1.3e-08 65.9 88 37.5
Migut.J00038 Erythranthe guttata HOM05D007752 ORTHO05D009994 2.5e-07 61.6 107 34.6
Nitab4.5_0004433g0030 Nicotiana tabacum HOM05D007752 ORTHO05D009994 1.3e-06 59.3 84 40.5
CDE06G1380 Ceratophyllum demersum HOM05D007752 ORTHO05D009994 2.1e-06 58.5 146 30.8
Lsat_1_v5_gn_5_152320 Lactuca sativa HOM05D007752 ORTHO05D009994 2.1e-06 58.5 57 45.6
Psat3g118880 Pisum sativum HOM05D007752 ORTHO05D009994 2.1e-06 58.5 135 30.4
SalBow5G4979 Salvia bowleyana HOM05D007752 ORTHO05D009994 2.1e-06 58.5 99 32.3
SalBow1G2062 Salvia bowleyana HOM05D007752 ORTHO05D009994 4.8e-06 57.4 99 32.3
SalBow1G4712 Salvia bowleyana HOM05D007752 ORTHO05D009994 8.1e-06 56.6 99 32.3


User provided reference genes

Program Settings